Query= MSMg01no532_g11.b1 MSMg01no532_g11.b1 CHROMAT_FILE:
MSMg01no532_g11.b1 PHD_FILE: MSMg01no532_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:19 2005
(586 letters)
>mm_chr9_114568075_114569060
Length = 986
Score = 1093 bits (565), Expect = 0.0
Identities = 577/581 (99%)
Strand = Plus / Plus
Query: 5 gaattcatctcaatcaccgagagcagtgtgaactggaaaagcctgcacccaggggtgtat 64
||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctcaaccacagaaagcagtgtgaactggaaaagcctgcacccaggggtgtat 264
Query: 65 ttcctctcgtatggctttacgtccccatagccttggaagtagcaccatcaactggggacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcctctcgtatggctttacgtccccatagccttggaagtagcaccatcaactggggacc 324
Query: 125 aagtactctaatgcctatgcctagagggcacattttcatctaaaatgcagaaggagctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtactctaatgcctatgcctagagggcacattttcatctaaaatgcagaaggagctct 384
Query: 185 ggggatccctcccaggctctgtatgctgtcttatgtgtgggagaattactggagccttat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggggatccctcccaggctctgtatgctgtcttatgtgtgggagaattactggagccttat 444
Query: 245 tttctgatctagcaggaacatcctatgtagcttcagggatattatggtttaaataggttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctgatctagcaggaacatcctatgtagcttcagggatattatggtttaaataggttt 504
Query: 305 ggtcctcacatactcatgtgttcaaactcttggcccatgggaagtagcactattaggagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtcctcacatactcatgtgttcaaactcttggcccatgggaagtagcactattaggagg 564
Query: 365 tgtggccttataagaataggtgtggccttgttggaggaagtgtttcactgtgtaggtggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtggccttataagaataggtgtggccttgttggaggaagtgtttcactgtgtaggtggg 624
Query: 425 ctttgagatctcctaggtttaagtacagcccagtgtggaattttagtttcctggctgcct 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctttgagatctcctaggcttaagtacagcccagtgtggaattttagtttcctggctgcct 684
Query: 485 gcagaagacagactccttttggctgacttcagattaagatgttgaactctcagctccttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcagaagacagactccttttggctgacttcagattaagatgttgaactctcagctccttc 744
Query: 545 tccagccccatgcctatctgcacacagccacccttcctgcc 585
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tccagccccatgcctatctgcacacagccacccttcctgcc 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_g11.g1 MSMg01no532_g11.g1 CHROMAT_FILE:
MSMg01no532_g11.g1 PHD_FILE: MSMg01no532_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:19 2005
(575 letters)
>mm_chr9_114737631_114738606
Length = 976
Score = 1106 bits (572), Expect = 0.0
Identities = 575/576 (99%), Gaps = 1/576 (0%)
Strand = Plus / Minus
Query: 1 actctgtagtccaaactgacctcaaactctcagagatctccctgcctctgcctccccagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 actctgtagtccaaactgacctcaaactctcagagatctccctgcctctgcctccccagt 779
Query: 61 gcaccaccatacctggcagatgagtttatttcttattagcgttaaccaagtacaggagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gcaccaccatacctggcagatgagtttatttcttattagcgttaaccaagtacaggagga 719
Query: 121 cctggtttgctctcgtggctgtttcttctgctggaggtagaagactcccaaacctcagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 cctggtttgctctcgtggctgtttcttctgctggaggtagaagactcccaaacctcagtc 659
Query: 181 atctgttgttcttggatgtggaggaaactctccctatgttcactggagcggaggtgaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 atctgttgttcttggatgtggaggaaactctccctatgttcactggagcggaggtgaaac 599
Query: 241 atgcaaagactgtggcaactcctgctggagacaccctcctcgcgtctcacggagaccact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atgcaaagactgtggcaactcctgctggagacaccctcctcgcgtctcacggagaccact 539
Query: 301 gggaggcctaaaggaaagcccttgtgatgaacacagtgacaaccagaagaagtgggaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gggaggcctaaaggaaagcccttgtgatgaacacagtgacaaccagaagaagtgggaggg 479
Query: 361 gtctaaaccaggcctataattatgaccccaggtggagtcaagtcttgattcagtggcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtctaaaccaggcctataattatgaccccaggtggagtcaagtcttgattcagtggcctc 419
Query: 421 agctgtttctgtggggga-gggggctcatcttcctgctaccttcctgccaccccgacttt 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agctgtttctgtgggggaggggggctcatcttcctgctaccttcctgccaccccgacttt 359
Query: 480 gcaaggggaaaccccttgctcctgaatttaccagtcagactctagctatttcctgcaacc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcaaggggaaaccccttgctcctgaatttaccagtcagactctagctatttcctgcaacc 299
Query: 540 ttatcatggcaggatgctgggtccagtttgacttta 575
||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttatcatggcaggatgctgggtccagtttgacttta 263
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space: 545790
Effective search space used: 545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
