Query= MSMg01no532_j23.b1 MSMg01no532_j23.b1 CHROMAT_FILE:
MSMg01no532_j23.b1 PHD_FILE: MSMg01no532_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:35 2005
(659 letters)
>mm_chr9_65869646_65870705
Length = 1060
Score = 1151 bits (595), Expect = 0.0
Identities = 634/655 (96%), Gaps = 17/655 (2%)
Strand = Plus / Plus
Query: 7 gaattctccagaagttac--agatttctcgatgtagaaaaatggatgtacttccctcctc 64
|||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 207 gaattctccagaag-tacaaagatttctcgatgtagaaaagtggatgtacttccctcctc 265
Query: 65 agaacccagggaacgcccaccgtgttagctgcttacgtaccagtcggtgccccggaggaa 124
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agaacccagggaatgcccgccgtgttagctgcttacgtaccagtcggtgccccggaggaa 325
Query: 125 tcccaagggagttacatgagttcatttctggaagttcttgatattttacttactatattc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcccaagggagttacatgagttcatttctggaagttcttgatattttacttactatattc 385
Query: 185 aaaatgaaaccaggatttctgctataaaaataaattaaggaagaaggtgtttatttgttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaatgaaaccaggatttctgctataaaaataaattaaggaagaaggtgtttatttgttt 445
Query: 245 ttgtttaaagtgggtttctagactaatagatgtgaagtgcccttggaggcaaggtgtaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttgtttaaagtgggtttctagactaatagatgtgaagtgcccttggaggcaaggtgtaat 505
Query: 305 gcttaacaaggaagagtgggtgtgtggtctcctgactgactgactgactgactgactgac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gcttaacaaggaagagtgggtgtgtggtctcctgactgactgactgactgactgactg-- 563
Query: 365 tgactgactggtttttccatgtattgttgtagaaagcaaatagctaggcaggaggtaaat 424
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 t----------tttttccatgtattgttgtagaaagcaaatagctaggcaggaggtaaat 613
Query: 425 acacacacacacacacactctggaaaatacaaccatccagaaagaaaattgaaggggact 484
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 614 acacacacacacacac--tctagaaaatacaaccatccagaaagaaaattgaaggggact 671
Query: 485 aacaccattattctccctagtgcagtggcagccagatcatcttgaagtataatcccaaat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aacaccattattctccctagtgcagtggcagccagatcatcttgaagtataatcccaaat 731
Query: 545 tgtcaagacccacctagtctcacagtgtcaattgatatgcaccctcttgtttaaaagttt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tgtcaagacccacctagtctcacagtgtcaattgatatgcaccctcttgtttaaaagttt 791
Query: 605 ttaaggccttgaagagatggctcagcagttaaaactgtatactactcttgcacag 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ttaaggccttgaagagatggctcagcagttaaaactgtatactactcttgcacag 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_j23.g1 MSMg01no532_j23.g1 CHROMAT_FILE:
MSMg01no532_j23.g1 PHD_FILE: MSMg01no532_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:35 2005
(562 letters)
>mm_chr9_66047165_66048126
Length = 962
Score = 1040 bits (538), Expect = 0.0
Identities = 556/562 (98%)
Strand = Plus / Minus
Query: 1 aggcttccaaagattcctcccaccccaccccctccccatatttgcaacagttggaagtgg 60
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 762 aggcttccaaagattcctcccaccccaccccctccccatattttcaacaggtggaagtgg 703
Query: 61 ggttctttgctagtctccacagactctgatggctggctgagggaagggactctttcatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ggttctttgctagtctccacagactctgatggctggctgagggaagggactctttcatca 643
Query: 121 catctacgttctgggccctttgtattggagccgggcttttgcacagactctgaagaacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 catctacgttctgggccctttgtattggagccgggcttttgcacagactctgaagaacac 583
Query: 181 acacaagcacagcgggcacgtgcagacctgcatgcagcactcaggacacaggccaaggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acacaagcacagcgggcacgtgcagacctgcatgcagcactcaggacacaggccaaggat 523
Query: 241 ctagtaactctaagcctcgctctccctttcagcaaccagggtttgttctttgacctcaga 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 522 ctagtaactctaagcctcgctctccctttcagcagccagggtttgttctttgacctcaga 463
Query: 301 tcttggcttccgtgccaaaagcaatgtgtgcccgcctgtcttctctttaaaacattaact 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcttggcttcagtgccaaaagcaatgtgtgcccgcctgtcttctctttaaaacattaact 403
Query: 361 cttcctactgccaggtcgccttcgaggtgagacttttcagaagctttcagagctctctta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cttcctactgccaggtcgccttcgaggtgagacttttcagaagctttcagagctctctta 343
Query: 421 caccgagtaaggaaggtggctgggagagaagccctcattcccaaacagggaaatggatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caccgagtaaggaaggtggctgggagagaagccctcattcccaaacagggaaatggatcc 283
Query: 481 ccaggctgcagctgtgcttcgtgctgcgtccgtcactgcggcctaagacccgaccttagg 540
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 282 ccaggctgcagctgtgcttcgtgctgcatccgtcactgcggcctaagacctgaccttagg 223
Query: 541 aggacaagaccatgtttctgac 562
||||||||||||||||||||||
Sbjct: 222 aggacaagaccatgtttctgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
