Query= MSMg01no532_m22.b1 MSMg01no532_m22.b1 CHROMAT_FILE:
MSMg01no532_m22.b1 PHD_FILE: MSMg01no532_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:50 2005
(628 letters)
>mm_chr9_98223483_98224510
Length = 1028
Score = 1176 bits (608), Expect = 0.0
Identities = 620/624 (99%)
Strand = Plus / Plus
Query: 5 gaattctataagaaatccggttgaaagccacaaggagcaagctagtaagcagtagtactc 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataagaaagcaggttgaaagccacaaggagcaagctagtaagcagtagtactc 264
Query: 65 catggtctctgcaccagttcctgcctccagattcctgccctgtttgagttcctgttctga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catggtctctgcaccagttcctgcctccagattcctgccctgtttgagttcctgttctga 324
Query: 125 cttccattgatggactatggtgtggaagtgtaagccacgtaaaccccttcctccccaact 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 cttccattgatggactatggtgtggaagtgtaagccacgtaaaccctttcctccccaact 384
Query: 185 tgctttttggttatggtgtttcgtctcagcagtagtaatcctaagacaagtaatgtctga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctttttggttatggtgtttcgtctcagcagtagtaatcctaagacaagtaatgtctga 444
Query: 245 ggtgactgagtaggtaatgatgctgtcattcatgggcaaattggagtcagtgtaactaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtgactgagtaggtaatgatgctgtcattcatgggcaaattggagtcagtgtaactaca 504
Query: 305 actgaagaacacagggccttccaggtgagagaagagcctcagggaagggaaggaagcaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actgaagaacacagggccttccaggtgagagaagagcctcagggaagggaaggaagcaag 564
Query: 365 tggctccaggcaagatacatcatgaaaaagggtccgagatgatagtgtcatttcttcaac 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 tggctccaggcaagatacatcatgaaaaagagtccgagatgatagtgtcatttcttcaac 624
Query: 425 aagcatttattaaacaccttcagtatgcaaccttgaagaccatggatataaaaaccgtgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagcatttattaaacaccttcagtatgcaaccttgaagaccatggatataaaaaccgtgt 684
Query: 485 gttggtctcagagtcgcatggggacagcacgagacagggtgtccacttagtgtgccgtga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttggtctcagagtcgcatggggacagcacgagacagggtgtccacttagtgtgccgtga 744
Query: 545 gtagagtcaaggaagaaggacaaagttatcatgttgagctttggcaggtcatgagtgagg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtagagtcaaggaagaaggacaaagttatcatgttgagctttggcaggtcatgagtgagg 804
Query: 605 gacagccagcatcaggggctgggg 628
||||||||||||||||||||||||
Sbjct: 805 gacagccagcatcaggggctgggg 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_m22.g1 MSMg01no532_m22.g1 CHROMAT_FILE:
MSMg01no532_m22.g1 PHD_FILE: MSMg01no532_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:50 2005
(488 letters)
>mm_chr9_98380350_98381237
Length = 888
Score = 837 bits (433), Expect = 0.0
Identities = 462/473 (97%), Gaps = 5/473 (1%)
Strand = Plus / Minus
Query: 1 actggagttatttatatgagagtaggggaggggctagacgggtgatgcaaagatcactgc 60
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 actggaattacttatatgagagtaggggaggggctagacgggtgatgcaaagatcactgc 458
Query: 61 attactggaaagctctacctcagtgtgggtgatgactcaagaaaattgcatcatggtact 120
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 457 attactggaaagctctacctcagtgtgggtgatgacccaagaaaattgcatcatggtacc 398
Query: 121 cctgcattaccagtgtttcctgtgaaacctgcaggcagctcaatcccagggtcacgtctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cctgcattaccagtgtttcctgtgaaacctgcaggcagctcaatcccagggtcacgtctc 338
Query: 181 accctgcaactgtctattgctcatggaggccctgatgaactgtgcaactttctaatgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 accctgcaactgtctattgctcatggaggccctgatgaactgtgcaactttctaatgaac 278
Query: 241 ccaaccaattcttgctaattttgtcagctttctgcatagtatgagcctccctctgtcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ccaaccaattcttgctaattttgtcagctttctgcatagtatgagcctccctctgtcctc 218
Query: 301 taggagggggatacttcattttggaggaagcagcttcttgacactttatcttttaccttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 taggagggggatacttcattttggaggaagcagcttcttgacactttatcttttaccttg 158
Query: 361 gtttttgtattttt-gccccattttcat---gttttttgagccttggataggatgatatg 416
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 157 gtttttgtattttttgccccattttcataatgttttttgagccttggataggatgatatg 98
Query: 417 atgtctgatttttaaattttatatttatttgtgtgtgtgtgt-gtgtgtgtgt 468
||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct: 97 atgtctgatttttaaatattatatttgtttgtgtgtgtgtgttgtgtgtgtgt 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
