BAC Information

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BAC

Clone NameMSMg01-533M13
Chromosome9 (Build37)
Map Location 94,191,656 - 94,192,197
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371, LOC384967
Downstream geneEG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533M13.T7 (MSMg01no533_m13.b1)MSMg01-533M13.TJ (MSMg01no533_m13.g1)
ACCAG601625AG601626
length719749
length of high quality
(start - end)
230 (63 - 292)544 (161 - 704)
definitionCHROMAT_FILE: MSMg01no533_m13.b1 PHD_FILE: MSMg01no533_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:05 2005CHROMAT_FILE: MSMg01no533_m13.g1 PHD_FILE: MSMg01no533_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCTTTGTTTTACTCTATTATTGCCGGGCGTTATTCGACTCACTATTT
CCAGAGGACCGCGGAATTCTTTGTTCTCCCCTGAGCCCCATTTTTTAATG
GGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTT
GGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAAT
CTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAA
CTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGTACA
AGCCATTGTTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAA
GGCTTTTCCCCACTTTCCCCTCTATAAGTTTCAGTGTCTCTGGTTTTATG
TGAAGTTCCTTGATCCACTTAGATTTGACCTTATTACAATGAGATTACTA
TGGTTCAATTCTCATTCTTCTACTTGATCACTACTACTTGTGCCCGCTCC
AATTGGTGAAATTGCTGTCTTTTCTTCCCCTGTTATGGTTTACCTCCCTT
GTCGAAGATCAATTGACTACTGTCGTTTGTGTTCTTTTCACGGCTCTTCC
CCTTCATTTTATTTGGTCCTACTTGCCTGTTCCCCATCCCTTTTTACCCC
GTATTATTTTTTCTTTTTTTTGCCTCTGTTTTTTCAAGCTTCTATGTGTT
TTTCTTTGCCGAATTCCTG
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTGTTGTTGGAGGTGAAAAAGAAG
GGAAGGTGGAGAAGGTTTAGCAGAGAAGTGGAGAGAAGAGAGGAGATATT
AAGCCATACACAGGGTTTTGTGTAATCTTTTATAATCTTCTTTGATTGTT
AAATATTCAATGTTTTCCTAGGAAAACATAACTATATCTAAGATCTGCAT
TTTATTTGGCAGAATTCACATTACAATATATTTAAAGATTAGTTAGTTTG
TTAGTTAGTTAGCTTTTCATTATTAGATACAGTAAGACAAAAGTATATCA
ATATTGAAAACGAAGAAACAAAAGTTAGCAGTGGTTGCCTTTCTATACTC
TATAAGAGATAGCTTTTTTTTTAACATCTGGAATTCTCTTTAGATATGAA
ATTACATGGAAAGAGAACGGTCAAAGGTAAGGTCAAAGAAACTGATTTCC
CTGGGCTGCCCTGCATGTAGTGGGAACATGGTAACCTTGGCATGAGTGTG
CCAGGCTCTATGAAGGATGTACCAGTGAGAAGTCCCGGGGTAAGGGAAAG
ACTGATTACATTCTAAAGTGCTGAAATTTGAAATTCATCACAGAGCCTTT
ATTATCAGCCCCAACCCAACTACCTTGTTACCATTCTTATACTTAACTGT
CTTCAAAGGATACATTTAAATCAATGACAGCTAAGATAATAGCAGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_m13.g1 MSMg01no533_m13.g1 CHROMAT_FILE:
MSMg01no533_m13.g1 PHD_FILE: MSMg01no533_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:05 2005
         (544 letters)



>mm_chr9_94191456_94192397
          Length = 942

 Score = 1002 bits (518), Expect = 0.0
 Identities = 537/544 (98%), Gaps = 2/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggttttgtgtaatcttttataatcttctttgattgttaaatattcaatgttttccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggttttgtgtaatcttttataatcttctttgattgttaaatattcaatgttttccta 260

                                                                       
Query: 61  ggaaaacataactatatctaagatctgcattttatttggcagaattcacattacaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaacataactatatctaagatctgcattttatttggcagaattcacattacaatata 320

                                                                       
Query: 121 tttaaagattagttagtttgttagttagttagcttttcattattagatacagtaagacaa 180
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 321 tttaaagattagttagtttgttagttagttagcttttcattagtagatacagtaagacga 380

                                                                       
Query: 181 aagtatatcaatattgaaaacgaagaaacaaaagttagcagtggttgcctttctatactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtatatcaatattgaaaacgaagaaacaaaagttagcagtggttgcctttctatactc 440

                                                                       
Query: 241 tataagagatagctttttttttaacatctggaattctctttagatatgaaattacatgga 300
           ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataagagacagcttttttt--aacatctggaattctctttagatatgaaattacatgga 498

                                                                       
Query: 301 aagagaacggtcaaaggtaaggtcaaagaaactgatttccctgggctgccctgcatgtag 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagagaacggccaaaggtaaggtcaaagaaactgatttccctgggctgccctgcatgtag 558

                                                                       
Query: 361 tgggaacatggtaaccttggcatgagtgtgccaggctctatgaaggatgtaccagtgaga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 559 tgggaacatggtaaccttggcatgagtgtgccaggctctatgaaggatgtgccagtgaga 618

                                                                       
Query: 421 agtcccggggtaagggaaagactgattacattctaaagtgctgaaatttgaaattcatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agtcccggggtaagggaaagactgattacattctaaagtgctgaaatttgaaattcatca 678

                                                                       
Query: 481 cagagcctttattatcagccccaacccaactaccttgttaccattcttatacttaactgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cagagcctttattatcagccccaacccaactaccttgttaccattcttatacttaactgt 738

               
Query: 541 cttc 544
           ||||
Sbjct: 739 cttc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 942
Length adjustment: 10
Effective length of query: 534
Effective length of database: 932
Effective search space:   497688
Effective search space used:   497688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)