BAC Information

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BAC

Clone NameMSMg01-533O24
Chromosome9 (Build37)
Map Location 115,328,087 - 115,461,229
singlet/doubletdoublet
Overlap geneEG546164
Upstream geneGlb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467
Downstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533O24.T7 (MSMg01no533_o24.b1)MSMg01-533O24.TJ (MSMg01no533_o24.g1)
ACCAG601742AG601743
length736784
length of high quality
(start - end)		379 (77 - 455)548 (77 - 624)
definitionCHROMAT_FILE: MSMg01no533_o24.b1 PHD_FILE: MSMg01no533_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:16 2005CHROMAT_FILE: MSMg01no533_o24.g1 PHD_FILE: MSMg01no533_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,328,087 - 115,328,465)(115,460,682 - 115,461,229)
sequence
CCTTTTTTTTCCCTGTTTTTGGCCGGGTTACGATTTTTATATGTCGAGGA
TCCGCGGAATTCTAGACCAGTTCTTAGAGCAGAGTGAGAGAGGATAGGGT
AAGTATTCTAGGGTTCACAGTGAGCCTTGAAGATGAAATTAGAGGAAGAG
AACAGAGCAAACAACCAGACAAGAACACATAGCTGGATTAGTCCCATTAT
CAACATGGCAGGAAGCATGGCACTATGCAGGCAGATGTGGTGCTGGAGAA
GCAACTGGGAGTTCTATATCTGAATCCACAGGTAGTAGGATGAGAGACAT
ATTGGGACTGGCTTGGGCTTCTGAAACTTCAAAGCCCCTCCCAGTGACAC
ACTTCCTCTAACAAGGCCACACCTCCTAATCCTTCTCAAGTGGTGTTACT
CCCGGATGACTAAGCATTCAAATATCTGAGCCTGTGGAGACCCATTCTTA
CTCAAAACCACACATCCCCATTCCCCGGGCCCTTCCCGGGGTTTTTTGTT
TTCCCCCTAAGCCCAAAAAACCTTTTTTAAAACACACCTTCTTTAAAAAG
CCCCCCCCCCGGCGCCTTAAAAATAGCCCCCTCCAATTTTTTTTTTTTAT
ATATATTCCCCCCCCCTCCTTTTTTTTTTTTCTTCTCTTTTTTGCCCTCT
CCCCNACGAACACTTACTTCCCCTCTTGCGTTGTGGCGGGGCGGGCCCCC
CCCCCTTTTTAATAATATCTCCCCCCCCCCCCCCCC

NCCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTCTCACAAGGCTAGTAACCA
TCTTGGGTGCCGTCATCTCCATTGGACTGGAAGGGTTCTAAGAGACTGTG
CCTTCTCAGTAATTTAAAAAGCTGCCCTACATTCTGGATGAGGACAATAA
GGGCCACGTTATGCTATGGCTTTTCAGAACACTGCCCTGCCTGTCCTAAA
GAAAAGCAGGTGACTTGTCCCCTCCAGCCTCCTATATGCAAGCTCCAGAA
AGCTTTGGTCCTCGCATAGACCAATGTTCTGTCTAAGAGTTTCCAAACTC
TAAGTGTCTCCTAGAAACCTGTGTAACCAAGATCCCCACTTCCTTCCCTG
TGGGAGACAGGTCGTGCTTGTTTAGCTGACATAACGAGCCAAGAGCTTTC
TGTAAAAGGAGAAGCCCCAAAGTGGTGTCCAAGGCTGGGCTATCTGCCCA
TGCCTTGCCGCAATACACCCCTAAAATGTCACTGCAGGCTTTCTGGGATC
TGGCCTTATGTGGAAAGTGACAGTGCCATGTAGCAATAAGGTAAGTCCAG
TCAACACAACCTTTATTTTTTAATTCTGAAGAGCTATGGGCCATTTGTTA
TTTTTCTTGGAGAGGNTTTGGTCCTTGGAGTCTTTCTTTGCCGCACTTCC
GGTCTCCCTGTCCGACTTGATATATGGTTTGAACAGAAAATATCCCCCCA
GCGCATGCTTTTGAGCACTTGGTCACTGGCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_o24.b1 MSMg01no533_o24.b1 CHROMAT_FILE:
MSMg01no533_o24.b1 PHD_FILE: MSMg01no533_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:16 2005
         (379 letters)



>mm_chr9_115327887_115328665
          Length = 779

 Score =  733 bits (379), Expect = 0.0
 Identities = 379/379 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcagagtgagagaggatagggtaagtattctagggttcacagtgagccttgaagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcagagtgagagaggatagggtaagtattctagggttcacagtgagccttgaagatga 260

                                                                       
Query: 61  aattagaggaagagaacagagcaaacaaccagacaagaacacatagctggattagtccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattagaggaagagaacagagcaaacaaccagacaagaacacatagctggattagtccca 320

                                                                       
Query: 121 ttatcaacatggcaggaagcatggcactatgcaggcagatgtggtgctggagaagcaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatcaacatggcaggaagcatggcactatgcaggcagatgtggtgctggagaagcaact 380

                                                                       
Query: 181 gggagttctatatctgaatccacaggtagtaggatgagagacatattgggactggcttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagttctatatctgaatccacaggtagtaggatgagagacatattgggactggcttgg 440

                                                                       
Query: 241 gcttctgaaacttcaaagcccctcccagtgacacacttcctctaacaaggccacacctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttctgaaacttcaaagcccctcccagtgacacacttcctctaacaaggccacacctcc 500

                                                                       
Query: 301 taatccttctcaagtggtgttactcccggatgactaagcattcaaatatctgagcctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatccttctcaagtggtgttactcccggatgactaagcattcaaatatctgagcctgtg 560

                              
Query: 361 gagacccattcttactcaa 379
           |||||||||||||||||||
Sbjct: 561 gagacccattcttactcaa 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_o24.g1 MSMg01no533_o24.g1 CHROMAT_FILE:
MSMg01no533_o24.g1 PHD_FILE: MSMg01no533_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:16 2005
         (548 letters)



>mm_chr9_115460482_115461429
          Length = 948

 Score = 1060 bits (548), Expect = 0.0
 Identities = 548/548 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttctcacaaggctagtaaccatcttgggtgccgtcatctccattggactggaagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgtttctcacaaggctagtaaccatcttgggtgccgtcatctccattggactggaagggt 689

                                                                       
Query: 61  tctaagagactgtgccttctcagtaatttaaaaagctgccctacattctggatgaggaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tctaagagactgtgccttctcagtaatttaaaaagctgccctacattctggatgaggaca 629

                                                                       
Query: 121 ataagggccacgttatgctatggcttttcagaacactgccctgcctgtcctaaagaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ataagggccacgttatgctatggcttttcagaacactgccctgcctgtcctaaagaaaag 569

                                                                       
Query: 181 caggtgacttgtcccctccagcctcctatatgcaagctccagaaagctttggtcctcgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 caggtgacttgtcccctccagcctcctatatgcaagctccagaaagctttggtcctcgca 509

                                                                       
Query: 241 tagaccaatgttctgtctaagagtttccaaactctaagtgtctcctagaaacctgtgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tagaccaatgttctgtctaagagtttccaaactctaagtgtctcctagaaacctgtgtaa 449

                                                                       
Query: 301 ccaagatccccacttccttccctgtgggagacaggtcgtgcttgtttagctgacataacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccaagatccccacttccttccctgtgggagacaggtcgtgcttgtttagctgacataacg 389

                                                                       
Query: 361 agccaagagctttctgtaaaaggagaagccccaaagtggtgtccaaggctgggctatctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agccaagagctttctgtaaaaggagaagccccaaagtggtgtccaaggctgggctatctg 329

                                                                       
Query: 421 cccatgccttgccgcaatacacccctaaaatgtcactgcaggctttctgggatctggcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cccatgccttgccgcaatacacccctaaaatgtcactgcaggctttctgggatctggcct 269

                                                                       
Query: 481 tatgtggaaagtgacagtgccatgtagcaataaggtaagtccagtcaacacaacctttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tatgtggaaagtgacagtgccatgtagcaataaggtaagtccagtcaacacaacctttat 209

                   
Query: 541 tttttaat 548
           ||||||||
Sbjct: 208 tttttaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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