Query= MSMg01no534_b11.b1 MSMg01no534_b11.b1 CHROMAT_FILE:
MSMg01no534_b11.b1 PHD_FILE: MSMg01no534_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:28 2005
(664 letters)
>mm_chr9_27383877_27384940
Length = 1064
Score = 1245 bits (644), Expect = 0.0
Identities = 656/660 (99%)
Strand = Plus / Minus
Query: 5 gaattctcctacatgtacacagtatgggcaggagtggctttctggcttcagcagagaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gaattctcctacatgtacacagtatgggcaggagtggctttctggcttcagcagagaaaa 805
Query: 65 ctcttgtctaaccatccttacacagcatgttggaattgtagtggttcccagtgcttaggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctcttgtctaaccatccttacacagcatgttggaattgtagtggttcccagtgcttaggg 745
Query: 125 ctgacaaagatgaaatggggatgttccataaagggaaagatgctgtgaatagcaacagca 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 744 ctgacaaagatgaaatggggatgttccataaagggaaagacgctgtgaatagcaacagca 685
Query: 185 attttaaaatggaaagcccaaagcatgtgcaaatgggaagaaacggggacgcctgtcaca 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 684 attttaaaatggaaagcccaaagcatgtgcaaatgggaagaaatggggacgcctgtcaca 625
Query: 245 catcacactgtgcagccacacctcccccaaaggcagcacctgtgctgtgaggtatcattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 catcacactgtgcagccacacctcccccaaaggcagcacctgtgctgtgaggtatcattt 565
Query: 305 aaatagatggggattggcatgctcacgaatgactatagaactctcacctgtgctcatcct 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caatagatggggattggcatgctcacgaatgactatagaactctcacctgtgctcatcct 505
Query: 365 acatctatggtttataaactacttctcctattcattaatgtattgattttcaaaagcttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acatctatggtttataaactacttctcctattcattaatgtattgattttcaaaagcttc 445
Query: 425 ctaatgtttctgctccaaatgtggagaatcctaggttttggaaatttttagacacatgtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaatgtttctgctccaaatgtggagaatcctaggttttggaaatttttagacacatgtc 385
Query: 485 actacagtgtctaaaggcagtgagatgaagctccacacaagcagtggaaagagcaggcac 544
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 actacagtgtctaaaggcagtgagatgaagctccacacaagcagtggaaaaagcaggcac 325
Query: 545 ggagtgccagcatggagtcctgctgctggaaactgtggacgccacaatgtagtaaattaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagtgccagcatggagtcctgctgctggaaactgtggacgccacaatgtagtaaattaa 265
Query: 605 gtctcttttcttcctgacttactatgaaaagatttgggccattttccaaccctttattcc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtctcttttcttcctgacttactatgaaaagatttgggccattttccaaccctttattcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_b11.g1 MSMg01no534_b11.g1 CHROMAT_FILE:
MSMg01no534_b11.g1 PHD_FILE: MSMg01no534_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:28 2005
(602 letters)
>mm_chr9_27221803_27222808
Length = 1006
Score = 1046 bits (541), Expect = 0.0
Identities = 575/595 (96%), Gaps = 16/595 (2%)
Strand = Plus / Plus
Query: 1 actggctgttgtgcgcagactcaggttacagctgcgcgctactctggactcgccattggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 actggctgttgtgcgcagactcaggttacagctgcgcgctactctggactcgccattggc 248
Query: 61 atacccagccaggtgggattcccagagaggaggttgtggggaggcatattctagggttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atacccagccaggtgggattcccagagaggaggttgtggggaggcatattctagggttca 308
Query: 121 ggaactttgggaacctgtgtctgtgtctagg------------aatctggggtgaagtac 168
||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 309 ggaactttgggaacctgtgtctgtgtctaggtggccttattagaatctggggtgaagtac 368
Query: 169 tttgagactttggcctcca-ccctgtgaggagggggtttggtgaaaatgcagggcacaac 227
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttgagactttggcctccaaccctgtgaggagggggtttggtgaaaatgcagggcacaac 428
Query: 228 cctgattcattgtgctgtcaggtttgggagggagccaggggcatttttttttttt---ct 284
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 429 cttgattcattgtgctgtcaggtttgggagggagccaggggcatttttttttttttttct 488
Query: 285 tcattctcctctgttagggttaaagcacatgatagtgttaaaacagaaaggtctggagca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcattctcctctgttagggttaaagcacatgatagtgttaaaacagaaaggtctggagca 548
Query: 345 ctggggaagataattgtaagagaactagtggggggattaatctggttttagtaggcttct 404
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctgggaaagataattgtaagagaactagtggggggattaatctggttttagtaggcttct 608
Query: 405 actcccacagagcccctcctctagtatctggctctatttctcttccataaacttcttgac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 actcccacagagcccctcctctagtatctggctctatttctcttccataaacttcttgac 668
Query: 465 tttatggatagctacactttaatatacattccaatatttaattcagttcagtgttaacag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tttatggatagctacactttaatatacattccaatatttaattcagttcagtgttaacag 728
Query: 525 actgacacaatttctagaccttggatatgtatatatatatatatatatatatata 579
||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 729 actgacacaatttctagaccttggagatatatatatatatatatatatatatata 783
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 572 tatatatatatatatatatatatatatat 600
|||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatatat 755
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 570 tatatatatatatatatatatatatatat 598
|||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatatat 755
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 568 tatatatatatatatatatatatatatat 596
|||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatatat 755
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 566 tatatatatatatatatatatatatatat 594
|||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatatat 755
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 564 tatatatatatatatatatatatatatat 592
|||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatatat 755
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 562 tatatatatatatatatatatatatatat 590
|||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatatat 755
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 560 tatatatatatatatatatatatatatat 588
|||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatatat 755
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 558 tatatatatatatatatatatatatatat 586
|||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatatat 755
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 556 tatatatatatatatatatatatatatat 584
|||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatatat 755
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 554 tatatatatatatatatatatatatatat 582
|||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatatat 755
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 574 tatatatatatatatatatatatatata 601
||||||||||||||||||||||||||||
Sbjct: 783 tatatatatatatatatatatatatata 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 12
Length of query: 602
Length of database: 1006
Length adjustment: 10
Effective length of query: 592
Effective length of database: 996
Effective search space: 589632
Effective search space used: 589632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
