Query= MSMg01no534_l11.b1 MSMg01no534_l11.b1 CHROMAT_FILE:
MSMg01no534_l11.b1 PHD_FILE: MSMg01no534_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:19 2005
(497 letters)
>mm_chr9_48455512_48456409
Length = 898
Score = 919 bits (475), Expect = 0.0
Identities = 490/495 (98%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagttatggtggtaagttcggggggctctatgtcaggctgagagaagctgggca 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttagggtggtaagttcggggggctctatgtcaggctgagagaagctgggca 263
Query: 64 acagagaacagccagaggtgtgcagcgaggagcagctgaaagccactgggctttgctatt 123
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 264 acagagaacagccagaggtgtgtaacaaggagcagctgaaagccactgggctttgctatt 323
Query: 124 aatgtagtcagtaaataaataaaggagggcttaagctgagtgtacagcaatcagtttgga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgtagtcagtaaataaataaaggagggcttaagctgagtgtacagcaatcagtttgga 383
Query: 184 actacagggtaattagctctgcagggggccgcagggctgcagagtcaggtttaaatgaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actacagggtaattagctctgcagggggccgcagggctgcagagtcaggtttaaatgaga 443
Query: 244 gagttcactttcactgaggcacccctggggtgcaaagaaagcagcctaggggagtcagtc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagttcactttcactgaggcacccctggggtgcaaagaaagcagcctaggggagtcagtc 503
Query: 304 cgccagcactccgg-taaggagtggccaaagagctgtagctctgggtctgggagcacaga 362
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgccagcactccgggtaaggagtggccaaagagctgtagctctgggtctgggagcacaga 563
Query: 363 gagagctagggcctcccggtggggcaaagccttccggtctgtgtggaaacagctcaccct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagagctagggcctcccggtggggcaaagccttccggtctgtgtggaaacagctcaccct 623
Query: 423 agactggaccaagccaggtagtccccagctataaaatgccactgtcctgagcctgtcacg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agactggaccaagccaggtagtccccagctataaaatgccactgtcctgagcctgtcacg 683
Query: 483 ccttcttcctttaag 497
|||||||||||||||
Sbjct: 684 ccttcttcctttaag 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space: 432456
Effective search space used: 432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_l11.g1 MSMg01no534_l11.g1 CHROMAT_FILE:
MSMg01no534_l11.g1 PHD_FILE: MSMg01no534_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:20 2005
(552 letters)
>mm_chr9_48604357_48605307
Length = 951
Score = 1054 bits (545), Expect = 0.0
Identities = 550/552 (99%), Gaps = 1/552 (0%)
Strand = Plus / Minus
Query: 1 aaagcaaaggctaggacagaaccattcacagacccctgagacaagaccccagctgccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aaagcaaaggctaggacagaaccattcacagacccctgagacaagaccccagctgccctg 692
Query: 61 tccggaggactctccctggcttttcttttcaaagggaaaaacaaatccttaaaacgtact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tccggaggactctccctggcttttcttttcaaagggaaaaacaaatccttaaaacgtact 632
Query: 121 cagaggaagcattttctccgttggctagacgggactggggagttgctggcagcattgggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cagaggaagcattttctccgttggctagacgggactggggagttgctggcagcattgggc 572
Query: 181 tgtggtctccggagcccggagagctgctattcctcatgtgcacttggctttttatgcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgtggtctccggagcccggagagctgctattcctcatgtgcacttggctttttatgcatg 512
Query: 241 gactgtcctccagctcctgggcaaatttctcactcccgggttttcaggagaaaggtttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gactgtcctccagctcctgggcaaatttctcactcccgggttttcaggagaaaggtttgt 452
Query: 301 catccgtcatcaccctcctcatccatcacagcagacggggaggcactgcctacgccggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 catccgtcatcaccctcctcatccatcacagcagacggggaggcactgcctacgccggtg 392
Query: 361 ggtaggtgagggaaaaggttatacgtagttttcctttcttccagntatagctctgtcccg 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 391 ggtaggtgagggaaaaggttatacgtagttttcctttcttccaggtatagctctgtcccg 332
Query: 421 ccaaccccccccccccttccccctgcctcccactttgctgagtgcataggcctgggctta 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ccaaccccccccccc-ttccccctgcctcccactttgctgagtgcataggcctgggctta 273
Query: 481 ggggatcattctggtgtgtgtaggcagagggatgtgttttgctgttagccctagttggtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggggatcattctggtgtgtgtaggcagagggatgtgttttgctgttagccctagttggtc 213
Query: 541 ttgtcatcccgt 552
||||||||||||
Sbjct: 212 ttgtcatcccgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space: 510022
Effective search space used: 510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|