BAC Information

Click to search

BAC

Clone NameMSMg01-534L11
Chromosome9 (Build37)
Map Location 48,455,715 - 48,605,107
singlet/doubletdoublet
Overlap geneZbtb16
Upstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt
Downstream geneHtr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534L11.T7 (MSMg01no534_l11.b1)MSMg01-534L11.TJ (MSMg01no534_l11.g1)
ACCAG602336AG602337
length722738
length of high quality
(start - end)
497 (46 - 542)552 (68 - 619)
definitionCHROMAT_FILE: MSMg01no534_l11.b1 PHD_FILE: MSMg01no534_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:19 2005CHROMAT_FILE: MSMg01no534_l11.g1 PHD_FILE: MSMg01no534_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,455,715 - 48,456,209)(48,604,557 - 48,605,107)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTATGGTGGTAAGTTCGGGGGGCTCTATGTCAGGCTGAGAGAA
GCTGGGCAACAGAGAACAGCCAGAGGTGTGCAGCGAGGAGCAGCTGAAAG
CCACTGGGCTTTGCTATTAATGTAGTCAGTAAATAAATAAAGGAGGGCTT
AAGCTGAGTGTACAGCAATCAGTTTGGAACTACAGGGTAATTAGCTCTGC
AGGGGGCCGCAGGGCTGCAGAGTCAGGTTTAAATGAGAGAGTTCACTTTC
ACTGAGGCACCCCTGGGGTGCAAAGAAAGCAGCCTAGGGGAGTCAGTCCG
CCAGCACTCCGGTAAGGAGTGGCCAAAGAGCTGTAGCTCTGGGTCTGGGA
GCACAGAGAGAGCTAGGGCCTCCCGGTGGGGCAAAGCCTTCCGGTCTGTG
TGGAAACAGCTCACCCTAGACTGGACCAAGCCAGGTAGTCCCCAGCTATA
AAATGCCACTGTCCTGAGCCTGTCACGCCTTCTTCCTTTAAGGTGACCTT
AGGAACAAATACAGGCGCAAGAGCCCACACTGAGCTACTCTACCTGCAGC
ATGGATACCAGTTCTTGATGTCATGGGGAGATGCCTAGGTGGGCATGTGA
GGGGCGTCTTCCTATTTAGCTCCATTTCCTCACCCTTGGCGACTGCATCC
TCAGTTTCAGTGAGCGAATTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAGCAAAGGCTAGGACAGAACCATTCACAGAC
CCCTGAGACAAGACCCCAGCTGCCCTGTCCGGAGGACTCTCCCTGGCTTT
TCTTTTCAAAGGGAAAAACAAATCCTTAAAACGTACTCAGAGGAAGCATT
TTCTCCGTTGGCTAGACGGGACTGGGGAGTTGCTGGCAGCATTGGGCTGT
GGTCTCCGGAGCCCGGAGAGCTGCTATTCCTCATGTGCACTTGGCTTTTT
ATGCATGGACTGTCCTCCAGCTCCTGGGCAAATTTCTCACTCCCGGGTTT
TCAGGAGAAAGGTTTGTCATCCGTCATCACCCTCCTCATCCATCACAGCA
GACGGGGAGGCACTGCCTACGCCGGTGGGTAGGTGAGGGAAAAGGTTATA
CGTAGTTTTCCTTTCTTCCAGNTATAGCTCTGTCCCGCCAACCCCCCCCC
CCCTTCCCCCTGCCTCCCACTTTGCTGAGTGCATAGGCCTGGGCTTAGGG
GATCATTCTGGTGTGTGTAGGCAGAGGGATGTGTTTTGCTGTTAGCCCTA
GTTGGTCTTGTCATCCCGTGGTGTGGTTGAGTAAGAGGTAAACAGCCATT
TAATTATTTATTGGGTGGCTGGAGGATTTTATAGGCGGAATAGCTTATGG
CAGTGGAAGAAAAGGGGGGCAAGCCTTAAACTTCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_l11.b1 MSMg01no534_l11.b1 CHROMAT_FILE:
MSMg01no534_l11.b1 PHD_FILE: MSMg01no534_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:19 2005
         (497 letters)



>mm_chr9_48455512_48456409
          Length = 898

 Score =  919 bits (475), Expect = 0.0
 Identities = 490/495 (98%), Gaps = 1/495 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagttatggtggtaagttcggggggctctatgtcaggctgagagaagctgggca 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttagggtggtaagttcggggggctctatgtcaggctgagagaagctgggca 263

                                                                       
Query: 64  acagagaacagccagaggtgtgcagcgaggagcagctgaaagccactgggctttgctatt 123
           |||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 264 acagagaacagccagaggtgtgtaacaaggagcagctgaaagccactgggctttgctatt 323

                                                                       
Query: 124 aatgtagtcagtaaataaataaaggagggcttaagctgagtgtacagcaatcagtttgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgtagtcagtaaataaataaaggagggcttaagctgagtgtacagcaatcagtttgga 383

                                                                       
Query: 184 actacagggtaattagctctgcagggggccgcagggctgcagagtcaggtttaaatgaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actacagggtaattagctctgcagggggccgcagggctgcagagtcaggtttaaatgaga 443

                                                                       
Query: 244 gagttcactttcactgaggcacccctggggtgcaaagaaagcagcctaggggagtcagtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagttcactttcactgaggcacccctggggtgcaaagaaagcagcctaggggagtcagtc 503

                                                                       
Query: 304 cgccagcactccgg-taaggagtggccaaagagctgtagctctgggtctgggagcacaga 362
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgccagcactccgggtaaggagtggccaaagagctgtagctctgggtctgggagcacaga 563

                                                                       
Query: 363 gagagctagggcctcccggtggggcaaagccttccggtctgtgtggaaacagctcaccct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagagctagggcctcccggtggggcaaagccttccggtctgtgtggaaacagctcaccct 623

                                                                       
Query: 423 agactggaccaagccaggtagtccccagctataaaatgccactgtcctgagcctgtcacg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agactggaccaagccaggtagtccccagctataaaatgccactgtcctgagcctgtcacg 683

                          
Query: 483 ccttcttcctttaag 497
           |||||||||||||||
Sbjct: 684 ccttcttcctttaag 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space:   432456
Effective search space used:   432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no534_l11.g1 MSMg01no534_l11.g1 CHROMAT_FILE:
MSMg01no534_l11.g1 PHD_FILE: MSMg01no534_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:20 2005
         (552 letters)



>mm_chr9_48604357_48605307
          Length = 951

 Score = 1054 bits (545), Expect = 0.0
 Identities = 550/552 (99%), Gaps = 1/552 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagcaaaggctaggacagaaccattcacagacccctgagacaagaccccagctgccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aaagcaaaggctaggacagaaccattcacagacccctgagacaagaccccagctgccctg 692

                                                                       
Query: 61  tccggaggactctccctggcttttcttttcaaagggaaaaacaaatccttaaaacgtact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tccggaggactctccctggcttttcttttcaaagggaaaaacaaatccttaaaacgtact 632

                                                                       
Query: 121 cagaggaagcattttctccgttggctagacgggactggggagttgctggcagcattgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cagaggaagcattttctccgttggctagacgggactggggagttgctggcagcattgggc 572

                                                                       
Query: 181 tgtggtctccggagcccggagagctgctattcctcatgtgcacttggctttttatgcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgtggtctccggagcccggagagctgctattcctcatgtgcacttggctttttatgcatg 512

                                                                       
Query: 241 gactgtcctccagctcctgggcaaatttctcactcccgggttttcaggagaaaggtttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gactgtcctccagctcctgggcaaatttctcactcccgggttttcaggagaaaggtttgt 452

                                                                       
Query: 301 catccgtcatcaccctcctcatccatcacagcagacggggaggcactgcctacgccggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 catccgtcatcaccctcctcatccatcacagcagacggggaggcactgcctacgccggtg 392

                                                                       
Query: 361 ggtaggtgagggaaaaggttatacgtagttttcctttcttccagntatagctctgtcccg 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 391 ggtaggtgagggaaaaggttatacgtagttttcctttcttccaggtatagctctgtcccg 332

                                                                       
Query: 421 ccaaccccccccccccttccccctgcctcccactttgctgagtgcataggcctgggctta 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ccaaccccccccccc-ttccccctgcctcccactttgctgagtgcataggcctgggctta 273

                                                                       
Query: 481 ggggatcattctggtgtgtgtaggcagagggatgtgttttgctgttagccctagttggtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggggatcattctggtgtgtgtaggcagagggatgtgttttgctgttagccctagttggtc 213

                       
Query: 541 ttgtcatcccgt 552
           ||||||||||||
Sbjct: 212 ttgtcatcccgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space:   510022
Effective search space used:   510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)