BAC Information

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BAC

Clone NameMSMg01-536H10
Chromosome9 (Build37)
Map Location 69,873,037 - 69,873,504
singlet/doubletsinglet
Overlap genenone
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2
Downstream geneGcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536H10.T7 (MSMg01no536_h10.b1)MSMg01-536H10.TJ (MSMg01no536_h10.g1)
ACCAG603670AG603671
length799780
length of high quality
(start - end)		468 (79 - 546)461 (58 - 518)
definitionCHROMAT_FILE: MSMg01no536_h10.b1 PHD_FILE: MSMg01no536_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:34 2005CHROMAT_FILE: MSMg01no536_h10.g1 PHD_FILE: MSMg01no536_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCTCTAAAATTGCGGCCGCTAATAGAATANTATATTCAGAGAGACGG
CGGAATTCTTTTGTTTTCCAAGAACTGTGAGGAAGTCTTCCTAGCAGAAG
GGTCATTATTTTTCCTCTACTAAGAGATACTAAGTTGGCAGAACTACTCA
GCAAAATTGATTTTCATAAATGTATTAAAATATCCTTCCCTAAGGATCTG
AGTTTCATCCACAATGCCCACATTTGAAAAAAATAAAAATAAACAAGGCT
CACCCTGGGACCTGAGACTTGCCATGTAGTGGTAATGTAGTGCCATGTAG
ATTGGGTAGCCAGCAAGTCCTGAAATTACTCTTATCACTACTCTTCTAGT
GCTAAGATTACAGGTGTACTCTACCACAGCTGCCTTGTTAAGTAGATTTG
GGGGTCAAGTGGGTCCTCATGTTTATTAGGCAATAAGCACTTTACCTCCT
GAGGTCTCTTCAGGCCCTTCCTAATTGCTTAGTAGCTTCTTGTAAGGCAG
CACACAGGCTAAGAAAAGAGTAAGAGAGTAAGTGTGTAGTGTGCCTCAGT
CCAGATTTCTCTTCTACATACAACTGTGTGTGATAGTACTTAAGGTTTTG
CTCACAAGCTGGGTGAGTGGCCTCTGAGAGGACATATTTTCATTGCAGGT
CACTAGAGTAAATGAACAGCTTACTGGGATGGAATGCCCAACACGATTTC
TGCATTTCATCAGTTGGGAGATTCCTTGTGTAGGGCTTACCCCCATACAT
AACCTGCTTTTGCCTTGCCGATGTACACTACTTTAAAATTGTTTCATGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTCTACAGGAGATAGGCCAGACACAAGACGCACAACCGTGAT
ACACCTTGCTGGCTTTATGATCTGGCAGGAAGACAACAAGAAATGGTTGG
GGGTGGCTCACCTGGAGCTGGTGAGCCTATTTGCTTTGCCAGTGTGAGGA
TTAGAGTTAGGTCCCTAAAACCAATGTGAAAAAAATTAAGGTGTTGTGGG
ATGTTGGGGAGGCAGAGACAGGCAGGAAAGCTTAGGATTCCCTGTCCAAG
CAGCCTAGCCTACTCCATGATTTCCACGCCAATAAGAAACTCTAATCTCA
AAAAAACAAAACAAAAAAGGCGGAGGCCTGAAGGGGTGGCCCAGTGGTTA
AGACCACTGGCGGTTCTTGCAGGGGCTTGGGGTTCGATTTCTTATACCTA
CGTGCTGTTCACCATCCTTTGTCCATTTGTAATTCTGGAAGCTGAGGCAG
GAGGATTGATTGCTTCAGCCCAGAAGGTCTAGCCAGCCTGGGTAAGAGTG
AGACCCCATTAAGACAAATACAAACCAAATATACCCGGAAGTAAAAAAAA
GAAAAATGACAGCCAAGTCTTTGACACAGCAAGTGTGACCTCCATGTGCC
CAGATGTGGCTCCTTATGTCACTGAAGCACCCCCCCTTCAAAGTGGATTA
AGCCATTTTAGATCTTTGGAACATAGATCCCCACAAAAGAAAGCTGTAAC
TTCCCTCCCACCCCGGAACAATTTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_h10.b1 MSMg01no536_h10.b1 CHROMAT_FILE:
MSMg01no536_h10.b1 PHD_FILE: MSMg01no536_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:34 2005
         (468 letters)



>mm_chr9_69872837_69873704
          Length = 868

 Score =  866 bits (448), Expect = 0.0
 Identities = 463/468 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggaagtcttcctagcagaagggtcattatttttcctctactaagagatactaagttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggaagtcttcctagcagaagggtcattatttttcctctactaagagatactaagttgg 260

                                                                       
Query: 61  cagaactactcagcaaaattgattttcataaatgtattaaaatatccttccctaaggatc 120
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 cagaactactaagcaaaattgattttcataaatgtgttaaaatatccttccctaaggatc 320

                                                                       
Query: 121 tgagtttcatccacaatgcccacatttgaaaaaaataaaaataaacaaggctcaccctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagtttcatccacaatgcccacatttgaaaaaaataaaaataaacaaggctcaccctgg 380

                                                                       
Query: 181 gacctgagacttgccatgtagtggtaatgtagtgccatgtagattgggtagccagcaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacctgagacttgccatgtagtggtaatgtagtgccatgtagattgggtagccagcaagt 440

                                                                       
Query: 241 cctgaaattactcttatcactactcttctagtgctaagattacaggtgtactctaccaca 300
           |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 cctgaaattactcttatcgctactcttctagtgctgagattacaggtgtactctaccaca 500

                                                                       
Query: 301 gctgccttgttaagtagatttgggggtcaagtgggtcctcatgtttattaggcaataagc 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctggcttgttaagtagatttgggggtcaagtgggtcctcatgtttattaggcaataagc 560

                                                                       
Query: 361 actttacctcctgaggtctcttcaggcccttcctaattgcttagtagcttcttgtaaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actttacctcctgaggtctcttcaggcccttcctaattgcttagtagcttcttgtaaggc 620

                                                           
Query: 421 agcacacaggctaagaaaagagtaagagagtaagtgtgtagtgtgcct 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcacacaggctaagaaaagagtaagagagtaagtgtgtagtgtgcct 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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