BAC Information

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BAC

Clone NameMSMg01-536O21
Chromosome9 (Build37)
Map Location 80,586,187 - 80,586,547
singlet/doubletsinglet
Overlap genenone
Upstream geneCox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536O21.T7 (MSMg01no536_o21.b1)MSMg01-536O21.TJ (MSMg01no536_o21.g1)
ACCAG604022AG604023
length812816
length of high quality
(start - end)
500 (48 - 547)545 (78 - 622)
definitionCHROMAT_FILE: MSMg01no536_o21.b1 PHD_FILE: MSMg01no536_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:10 2005CHROMAT_FILE: MSMg01no536_o21.g1 PHD_FILE: MSMg01no536_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAACTCTTCTTCTGGGGAACAGGGTACCCGTAAGTATAGCTT
TACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTA
TCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACT
TTCTCCAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAGCGG
TTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGAA
GTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACACAAAA
TAAGTATACAGGCCTTTCCACGGGTCTTGAACCCGAGGAAAAGTTTAGGT
CAGGTAAGAATACCTAGGGAGAGATTAGAAGGAAGGAAAAGAAAAAAGAA
AAGAAAAAAGATCAATTAGCGGAGGTCTCTAGGAGAAGGAGCCTATACTC
ATCACTAGATGAGCTCAAGGAGCCAGCTCTTAGTAGCTCTGAATCAGATG
AAGAATTCTCCTCTGAAGAAACAGACTTGGAGGAGGAAGCAGCTCATTAT
GAGAGAAAAGGGTACCAGCCAGATAAAATGCTAGCTAATCAGTTAAGGAA
AAAAGCAAAAGCGGCTGGCGAAGGCCAGCATGCTGTTCAGCCTCCGGGCA
GTCGGCTTCAAGGTCATAGTGCACTTTCCGCCTATGCGGAGACCCCCCCC
CTGCGTAGTGCATCAACCCTGCGCAAAGAGGCAATGGACAGAGAAGCCAT
GCCCAGACTCCN
NCCCATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATATGGA
GAAACCCTGTCTCCAAAACAAAACAAAACCAAACAAAAAATGGATATTTA
AGAGACCCATGGTACAAAAAACATACGCGATGGAAATCAGAAAATAACAA
CTAATAAACTCTTGGTGAGACTAGTCACCCAAGGGATCACCCAAAATAAG
ATCTAAGTGCTTAAATATCCAATGTAAGAACATTAAAAACACATCTAAGC
AGAGCCTACAGATCTTTAAATAATATGATAATGTTGGGAACAGTTTAATT
AATTAATTAATTAAGGTAAATTTAATTAAGTTTAACATTTATGTTAAATT
AGAAAATGTAGAAAAGGCATTTCAACAAAACTATTTCTTTTTTTGTGTTG
TAAAAGAGTAATTTATTAAATATCTCAACTCTTGGTTTATACCTATTTAT
TAATCTGTGATAAAACAAAAGGCTCACACACAGCATCCTTTTCTAACTTT
GCTCCAAAGTGTTCTAGAGACTTTCTAAAACATTGAGCTCCTGAACAACC
TAAAACCAATTAGACATAATTGTGTTGTTTTCAAGTGGTTCTTCCAACAA
CCTACAGGAACTTTGAGAAAGTAGCGTTTTCCCGTGGACAGANGTCAGTT
AGTCACAGGATGTGACCACCAGTGGGGTCATGAACTGATTCTCAAACCTT
GGAGTCAGACTGTGTGTCACTGTCATTTCCTGCAGCACTTTGACTCTGGC
GCGCATCTTGGCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_o21.g1 MSMg01no536_o21.g1 CHROMAT_FILE:
MSMg01no536_o21.g1 PHD_FILE: MSMg01no536_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:10 2005
         (545 letters)



>mm_chr9_80585987_80586931
          Length = 945

 Score =  644 bits (333), Expect = 0.0
 Identities = 354/361 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctatatggagaaaccctgtctccaaaacaaaacaaaaccaaacaaa 60
           |||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 caggacagccagggctatacagagaaaccctgtctccaaaacaaaacaaaacaaaacaaa 260

                                                                       
Query: 61  aaatggatatttaagagacccatggtacaaaaaacatacgcgatggaaatcagaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatggatatttaagagacccatggtacaaaaaacatacgcgatggaaatcagaaaataa 320

                                                                       
Query: 121 caactaataaactcttggtgagactagtcacccaagggatcacccaaaataagatctaag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 caactaataaactcttggtgagactagtcacccaagggatcacccaaaataagatccaag 380

                                                                       
Query: 181 tgcttaaatatccaatgtaagaacattaaaaacacatctaagcagagcctacagatcttt 240
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tgctcaaatatccaatgtaagaacattaaaaacacatctaagcagagcctacagattttt 440

                                                                       
Query: 241 aaataatatgataatgttgggaacagtttaattaattaattaattaaggtaaatttaatt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aaataatatgataatgttgggaacagtttaattaattaattaattaaggtcaatttaatt 500

                                                                       
Query: 301 aagtttaacatttatgttaaattagaaaatgtagaaaaggcatttcaacaaaactatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtttaacatttatgttaaattagaaaatgtagaaaaggcatttcaacaaaactatttc 560

            
Query: 361 t 361
           |
Sbjct: 561 t 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)