NNNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTATAATTCACGTTAAAAAATCGAATTATATGCAATAT
TCATGATGTCAGATTTTTTAAGAGTCTCTTATATAGTAACTGACTCAATA
TACAGAAAGGGTTGTTTTACACATAGAGACTGCTGGACTTATTCAGGATA
ATTTTGAATTGACTTCACTATTTATTCAGCTACAAAAAATTACCAGAGAT
GGAATTTTCTATTATATATAACACACATAAGATCCCCTACACATCTTCCA
GGCACTCTGGTGCAATGTAATCAAGAAATTGACCAGTTATTATTAAGAAA
TTTATTAGAAGCTTCAGAATTCTAAAAAGAAAAAATGTTAACAGCAAAGA
TTTAATGAAAGAATCCTCTATCACTTGACAAGAAGGGAAGAAAATTTTGA
GGAAATTCCTACTTGCTCATTATATAAGCAAACTCCATTGCCTATAGGAA
CTAACCCTAAAGGTACCCAAAATGACATTTGGCAAATGAATGTATTCCAC
TTTACAGAGTTTGATAAGCAGAAATATGTGTACCATACTATAGACACATA
TTCAGGATTTCAATGGGCAACTGCATTGGCATCAGAAAAGGCTGATTCTG
TAATTACACATTTGTTAGAAGTTATGTCCATGATGGAAATACCCATACAA
ATTAGAACAGACAATTGTCTGGTGTATATCTCTAATAAGATGAAGCAG

NNNCCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTATTTATGTATTTATGA
ATATACATATACATAAATATCCATATATGTATGTAACAACAGTGAAAAAG
AGGCCATGAATTTGAAAAGAAGCAAGGGAGATATAAGGGAAAGTTTGGAG
GGAGTAAAGAAAGAGGAATTTATAGTTATAAGAAAAGGAGTATAATTATG
CTATAATCTCAAAAAATGAAAAATGATTTAAAAATTTTCTTGTTCAGAAG
CTGGATAGTCTATTCATTTTCTTTCTTTTCAGCGTCCTAAATGAACTGAG
GCAACGACTTGTCTAAGATATCAAAATTATTTGCTAATGTCAAAATTCTT
AGAGAATACAAATACTCCTTTATTTCTGTAATTTTAAACTTTGGAGTTTT
ATATTTGTTTTGTCATGCATTTTACTTAATGTGTATACTATTTATGGTGG
ATCAAAGATATTTTGTTTCTTTATTTTTTGCCCATGAATGTCCAATTATC
TTTTGATAATTTGTTTGAAACTCCTTTCTTCTCATAATTATAAAGGCCAA
GTGTCCACATCCATGTAAGTTTATAGCAAAATTCTATATTTTTCTTTCTT
TCATTATATCCCACTATTTTCCTTGATAACTGTAGAGTTTTTGGACCTTT
AAAATCAGACAATGTGTCTTCTAATTTTGCTCCTTTTTTAAAGTTAA

Query= MSMg01no537_h11.g1 MSMg01no537_h11.g1 CHROMAT_FILE:
MSMg01no537_h11.g1 PHD_FILE: MSMg01no537_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:50 2005
         (632 letters)



>mm_chr9_36339706_36340741
          Length = 1036

 Score = 1170 bits (605), Expect = 0.0
 Identities = 627/637 (98%), Gaps = 6/637 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctagtatttatgtatttatgaatatacatatacataaatatccatatatgtatgtaacaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1029 ctagtatttatgtatttatgaatatacatatacataaatatccatatatttatgtaacaa 970

                                                                        
Query: 61   cagtgaaaaagaggccatgaatttgaaaagaagcaagggagatataagggaaagtttgga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  cagtgaaaaagaggccatgaatttgaaaagaagcaagggagatataagggaaagtttgga 910

                                                                        
Query: 121  gggagtaaagaaagaggaatttatagttataagaaaaggagtataattatgctataatct 180
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  gggagaaaagaaagaggaatttatagttataagaaaaggagtataattatgctataatct 850

                                                                        
Query: 181  caaaaaatgaaaaatgatttaaaaattttcttgttcagaagctggatagtctattcattt 240
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 849  caaaaaatgaaaaatgattt-aaaattttcttgttcagaagctggatagtctattcattt 791

                                                                        
Query: 241  tctttctt-----ttcagcgtcctaaatgaactgaggcaacgacttgtctaagatatcaa 295
            ||||||||     ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 790  tctttcttttctcttcagcgtcctaaatgaactgaggcaacgacttatctaagatatcaa 731

                                                                        
Query: 296  aattatttgctaatgtcaaaattcttagagaatacaaatactcctttatttctgtaattt 355
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  aattatttgctaacgtcaaaattcttagagaatacaaatactcctttatttctgtaattt 671

                                                                        
Query: 356  taaactttggagttttatatttgttttgtcatgcattttacttaatgtgtatactattta 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  taaactttggagttttatatttgttttgtcatgcattttacttaatgtgtatactattta 611

                                                                        
Query: 416  tggtggatcaaagatattttgtttctttattttttgcccatgaatgtccaattatctttt 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  tggtggatcaaagatattttgtttctttattttttgcccatgaatgtccaattatctttt 551

                                                                        
Query: 476  gataatttgtttgaaactcctttcttctcataattataaaggccaagtgtccacatccat 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  gataatttgtttgaaactcctttcttctcataattataaaggccaagtgtccacatccat 491

                                                                        
Query: 536  gtaagtttatagcaaaattctatatttttctttctttcattatatcccactattttcctt 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490  gtaagtttatagcaaaattctatatttttctttctttcattatatcccactattttcctt 431

                                                 
Query: 596  gataactgtagagtttttggacctttaaaatcagaca 632
            |||||||||||||||||||||||||||||||||||||
Sbjct: 430  gataactgtagagtttttggacctttaaaatcagaca 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1036
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1026
Effective search space:   638172
Effective search space used:   638172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)