XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAT
CTAAAAATCCACCATATATTCAAGCTAGAAATCTGCAAATCATCCTATTT
CCATAAATCCCCTCCCATTTCCTCTAAATAGGAAATCTGCTGCAGAAGGC
CCCCCTCTGTTCTATTTCCAATGTCTTGGTTCTACTTTTACATCTCTATT
CTCACTGTCATCTCTCATCTGGATTTTGTGACCATATTAACAGCCCTCAC
TTCCCCTTCTCTACTATCCCTGTCTCATGCTCTTCCAAAGCAACAGAATA
CATAAAATAATCTGACTCCTATTTTATGAATCTTCCGAAATACCCCTCTT
TCTAAAATAAATAAAAGATCTTCTCATGTTCCACAAGCTGGCAGTGGTCA
AACACTGGCTTTGATCCTGATCTATAACTCTCTCATATTTTTTCAAGCCT
CTTTCAGTTGCATTGAACTTTGAAGTTCTCAGATAAAGTATGTCTTTTTT
GTACCATGCCCTCTACACAAACCCCTTCTTCTGCTAGAAACACTTCCCTT
CCAAATTTATCTTTGGTTCTCATTTCTCAGTATTCTCAGAAATAATCTTT
ATGCCATCCACCACATACCATTTAAATACTAAATATTCCCCTAGTCCCCA
TGTCTTAAAAGCTTGGTCTCCAACCTTTGATACAGGTAGAAAATGGTATA
ACCTTTAAGAAGTGAGGTTCAGTAGAAAGGAATTAAAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTTTATTTTTTATCATG
AATGGGTGTTGGATTTTGTCAAATGCTTTCTCCGCATCTAATGAGATGAT
CATGTGGTTTCTGTTTTTTATTTTGTTTATATAATGGATTACATTGATGG
ATTTCTGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATTGATGATTGTTTTAATGTGTTCTTGGATTCAGTTAGTGAGAAT
TTTATTGAGGATTTTTACATCGATATTAATAAGGGAAATTGGTCTGAAGT
TCTCTATCTTTGTTGGATCTTTCTGTGGTCTAGGTAATTGTGGCTTCATA
GAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGGAATAGTTTGT
GCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTA
AACCTATCTGGTCCTGGGCTTTTTTTGGTTAGGAGACCATTAATGACTTC
TTCTATTTCTCTAGAGGATATGGGACAGTTTAGATCGTTAACTTGATCCT
GGTTTAACTTTGGTACCTGAGATCTGTCTAGAAATTTGTCCATTTCGTCC
AGTTTTTCCAGTTTTGTTGAGTATAGCATTTTGTAGAAAGATCTGATGGT
GTTTTGGATTTTTTTCANGGNTTGTTGGTAAGTCTC

Query= MSMg01no538_n24.b1 MSMg01no538_n24.b1 CHROMAT_FILE:
MSMg01no538_n24.b1 PHD_FILE: MSMg01no538_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:38 2005
         (621 letters)



>mm_chr9_23494494_23495509
          Length = 1016

 Score = 1170 bits (605), Expect = 0.0
 Identities = 615/621 (99%), Gaps = 5/621 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatatattcaagctagaaatctgcaaatcatcctatttccataaatcccctcccatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ccatatattcaagctagaaatctgcaaatcatcctatttccataaatcccctcccatttc 757

                                                                       
Query: 61  ctctaaataggaaatctgctgcagaaggcccccctctgttctatttccaatgtcttggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ctctaaataggaaatctgctgcagaaggcccccctctgttctatttccaatgtcttggtt 697

                                                                       
Query: 121 ctacttttacatctctattctcactgtcatctctcatctggattttgtgaccatattaac 180
           |||||||||     ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctactttta-----ctattctcactgtcatctctcatctggattttgtgaccatattaac 642

                                                                       
Query: 181 agccctcacttccccttctctactatccctgtctcatgctcttccaaagcaacagaatac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 641 agccctcacttccccttctctactatccctgtctcatgctcttccaaagcaagagaatac 582

                                                                       
Query: 241 ataaaataatctgactcctattttatgaatcttccgaaatacccctctttctaaaataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ataaaataatctgactcctattttatgaatcttccgaaatacccctctttctaaaataaa 522

                                                                       
Query: 301 taaaagatcttctcatgttccacaagctggcagtggtcaaacactggctttgatcctgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 taaaagatcttctcatgttccacaagctggcagtggtcaaacactggctttgatcctgat 462

                                                                       
Query: 361 ctataactctctcatattttttcaagcctctttcagttgcattgaactttgaagttctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ctataactctctcatattttttcaagcctctttcagttgcattgaactttgaagttctca 402

                                                                       
Query: 421 gataaagtatgtcttttttgtaccatgccctctacacaaaccccttcttctgctagaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gataaagtatgtcttttttgtaccatgccctctacacaaaccccttcttctgctagaaac 342

                                                                       
Query: 481 acttcccttccaaatttatctttggttctcatttctcagtattctcagaaataatcttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acttcccttccaaatttatctttggttctcatttctcagtattctcagaaataatcttta 282

                                                                       
Query: 541 tgccatccaccacataccatttaaatactaaatattcccctagtccccatgtcttaaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgccatccaccacataccatttaaatactaaatattcccctagtccccatgtcttaaaag 222

                                
Query: 601 cttggtctccaacctttgata 621
           |||||||||||||||||||||
Sbjct: 221 cttggtctccaacctttgata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1016
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1006
Effective search space:   614666
Effective search space used:   614666
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)