Query= MSMg01no540_p05.b1 MSMg01no540_p05.b1 CHROMAT_FILE:
MSMg01no540_p05.b1 PHD_FILE: MSMg01no540_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:24 2005
(388 letters)
>mm_chr9_106573329_106574116
Length = 788
Score = 735 bits (380), Expect = 0.0
Identities = 386/388 (99%)
Strand = Plus / Plus
Query: 1 cactggtactcaggcagcccttacctaggctgtcccagagtgctcagtctggaggtgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactggtactcaggcagcccttacctaggctgtcccagagtgctcagtctggaggtgtct 260
Query: 61 agtagtatttttgaagacgtaaattccagctcctatagctcagtctactaggttgtcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtagtatttttgaagacgtaaattccagctcctatagctcagtctactaggttgtcaat 320
Query: 121 ctgaggaaggctggccagagattcagaggctgtcacacagatcacaaagatgggttacag 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaggaaggctggccagagagccagaggctgtcacacagatcacaaagatgggttacag 380
Query: 181 ccatcccttccagaaaccaggggaccttctctttaggctccttgtagtgaccctcaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatcccttccagaaaccaggggaccttctctttaggctccttgtagtgaccctcaagtc 440
Query: 241 ctttgctgtcccatgagatctccaatgtcccaccacagcgtctgcagcagcagtgagact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgctgtcccatgagatctccaatgtcccaccacagcgtctgcagcagcagtgagact 500
Query: 301 gtcaagtcaatcctccccgatgttggcaacatgatcagataagccctcttcattcctcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaagtcaatcctccccgatgttggcaacatgatcagataagccctcttcattcctcag 560
Query: 361 gagagtgctgatggctgctgtcacttca 388
||||||||||||||||||||||||||||
Sbjct: 561 gagagtgctgatggctgctgtcacttca 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_p05.g1 MSMg01no540_p05.g1 CHROMAT_FILE:
MSMg01no540_p05.g1 PHD_FILE: MSMg01no540_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:24 2005
(587 letters)
>mm_chr9_106738930_106739916
Length = 987
Score = 1122 bits (580), Expect = 0.0
Identities = 586/588 (99%), Gaps = 2/588 (0%)
Strand = Plus / Minus
Query: 1 aaggccagcctggtctgcaaagcaagtttcaagacagcctggactacacagataaacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaggccagcctggtctgcaaagcaagtttcaagacagcctggactacacagataaacaga 653
Query: 61 gagaccctatctcaaataaacagaaggggtttgtatctaaaaattaacctgaattgcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gagaccctatctcaaataaacagaaggggtttgtatctaaaaattaacctgaattgcatt 593
Query: 121 tctttaaaatttatagtagtagctaaatggaaggtaattttagtgagtatagtctagcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tctttaaaatttatagtagtagctaaatggaaggtaattttagtgagtatagtctagcaa 533
Query: 181 aataatccattgttattaatggattaatatttcactaataacggaatagtaaaatcaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aataatccattgttattaatggattaatatttcactaataacggaatagtaaaatcaaca 473
Query: 241 atccattcaagtagtacggatccaaccactcattaaaagtcttttgacttttctacatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atccattcaagtagtacggatccaaccactcattaaaagtcttttgacttttctacatgt 413
Query: 301 ttcgaaatcttcaaaacacaaaggttaagggaagatatgagaaaaacaaacaaaaagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttcgaaatcttcaaaacacaaaggttaagggaagatatgagaaaaacaaacaaaaagaat 353
Query: 361 ggtttatatgtcatgatccttgacaagattttttttttaagtttaaatgtaaaaaaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggtttatatgtcatgatccttgacaagattttttttttaagtttaaatgtaaaaaaagaa 293
Query: 421 aagtgacgcccggcgtggtggctcacgcctttaatcccagcacttgggaggcagaggcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aagtgacgcccggcgtggtggctcacgcctttaatcccagcacttgggaggcagaggcag 233
Query: 481 gtggatttctgaattcaaggccagcctggtctacaaagtgagttccaggacagccagggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gtggatttctgaattcaaggccagcctggtctacaaagtgagttccaggacagccagggc 173
Query: 541 tacacagagaaaccctgtctcaaaaaaccaaaaaa-aaaaaaaaaaaa 587
|||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 172 tacacagagaaaccctgtctcaaaaaac-aaaaaacaaaaaaaaaaaa 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
