CCCCTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTAGACTTTTGCTTCTTTGATTCACTATAAAGCTTCAAG
AAACAGGTTGTCCTTTTTAAAACTTCCTTATATAAAAAAATCACACACTA
AAATTAGCAAGATTCAAAGTATATACAATTCATTGAACTTCTGTGCAGCT
AGTATACTCATTCATAATGGAAACTGTGGATCTTCACATTACATTTTACA
TTTTCAGTATTATATATATCCTATGCACTTATCAAACCCCCAAAACAAAA
ATCAACAGTAGAAATAGAATTTAAAAAACAACTAGCTTTATATCTTCTTT
TATAGCTCACGTCTCTTACCTCTTATATTTAGCTTTCTTTAATTTATTAG
TGCTTTAATATATATATATATATATATATATACACATATATACATATATA
ACATATTATATACGCATACATATACTATATCATATATACATTTATAATGT
ATGTACATGCATATATCATATATACTATTTGCAGTATATATATTTCTTAA
TTGTAAAGTAAAATGAACTTAAAATGGCAGGAAATTGATAGAGTGTATTA
TTTAAGCAAGTCATACAATCTCAGAAACACAAAAATTACATTTTCTTACT
TATTTATATAATATGGCCAAAATATATGTATATGTGCAAACAATTGTACA
AGAAGTATTGTAAACAGAGAAAGCAAGCTGCACAGAAGTATCC

NCCACGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACAAATGGAGATTCTCCA
CAGATACTTAAAAGTTACACTCGTACAAGAATTTATCAGGGCCCAGGAAA
TAGGGGACTTGTGGTATTGCATTATTCATGAGAAGGTCTGCTAGAGCAGA
ACCCTTGGTGGTGGGCTTAACAATAGACTAGCTCAACACCTGGCTCCCTT
CTTTGTGGCAGCAGACTGGTCCTGCCTTCTTTTGATTTATACATTCCTTT
TGTATTGTGCCACTGTAACTCCATGTAACTCCTGGTTTCTTGTTATTCTT
CTGTATAAAAAGTTTGATGCTTGACTTGACAAATTACATTCAGATTCTAC
ACAATCTCCTGTGTGCATCTGTCTGTCATTTCCACCGACTCCTTGCTCAT
CTGCACCCAGAGACCTGTCCTACACAGACAAGGTACCCTAGAGAGTCTGC
TGCATGTCTCTGTTTAGTTTCTGTTTCCAAGATTTGTCCATTGGTGAGAG
TGGGGTGTTGAAATCTCCCACTATTATTGTGTGAGGGGCAATGTGTGCTT
TGAGCTTTACTGAAGTTACTTTAATGAATATGACAGCCCTTGCATTTGGA
GCATAGATATTTAGAATTGAGAGTTCATCTTGGTAGATTTTTATCTTTGA
TGAATATGAAGTGGCCCTCCTTGTCTTTTTTGATAACTTTG

Query= MSMg01no541_d09.b1 MSMg01no541_d09.b1 CHROMAT_FILE:
MSMg01no541_d09.b1 PHD_FILE: MSMg01no541_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:46 2005
         (685 letters)



>mm_chr9_25786808_25787891
          Length = 1084

 Score =  851 bits (440), Expect = 0.0
 Identities = 536/584 (91%), Gaps = 32/584 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttagacttttgcttctttgattcactataaagcttcaagaaacaggttgtcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggaattccttagacttttgcttctttgattcactataaagcttcaagaaacaggttgtcc 497

                                                                       
Query: 64  tttttaaaacttccttatataaaaaaatcacacactaaaattagcaagattcaaagtata 123
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 496 ttttaaaaacttccttatataaaaaattcacacactaaaattagcaagattcaaagtata 437

                                                                       
Query: 124 tacaattcattgaacttctgtgcagctagtatactcattcataatggaaactgtggatct 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tacaattcattgaacttctgtacagctagtatactcattcataatggaaactgtggatct 377

                                                                       
Query: 184 tcacattacattttacattttcagtattatatatatcctatgcacttatcaaacccccaa 243
           ||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| || ||
Sbjct: 376 tcacattacattttacagtttcagtatcatatataccctatgcacttatcaaactccaaa 317

                                                                       
Query: 244 aacaaaaatcaacagt-agaaatagaatttaaaaaacaactagctttatatcttctttta 302
           ||||||| ||||  || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 316 aacaaaattcaat-gttagaaatagaatttaaaaaacaactag-tttatatcttctttta 259

                                                                       
Query: 303 tagctcacgtctcttacctcttatatttagctttctttaatttattagtgctttaatata 362
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tagctcatgtctcttacctcttatatttagctttctttaatttattagtgctttaatata 199

                                                                       
Query: 363 tatatatatatatatatatacacatatatacatatataacatattatatacgcatacata 422
           |||| |||||||         ||||||   |||||||              |||||||||
Sbjct: 198 tatacatatata---------acatat---catatat--------------gcatacata 165

                                                                       
Query: 423 tactatatcatatatacatttataatgtatgtacatgcatatatcatatatactatttgc 482
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 164 tactatatcatatatatatttataatgtatgcacatgcatatatcatatatactatttgc 105

                                                                       
Query: 483 agtatatatat--ttcttaattgtaaagtaaaatgaacttaaaa-tggcaggaaattgat 539
           |||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 104 agtatatatatatttcttaattgtaaagtaaaatgaacttaaaaatggcaagaaattgat 45

                                                       
Query: 540 agagtgtattatttaagcaagtcatacaatctcagaaacacaaa 583
           |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 44  agagtgtattatttaagcaagtcatacaatctcagaaagacaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space:   724950
Effective search space used:   724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)