NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACCTCCTGCTCAAGTCCATGCTGATCCTAGAGAGATGGATC
GGGCATTAGAAGGCAGATCTCACCTTCCACCCCTCACCCACCCTTACTCC
ACAGGTGCCACAGGGAAAGGCCTCGCAGGTCTGGCCCTGCCCCACCGTGT
AAGGTTGACAAGGCCACATCCAGCTGCTGCAAAGAGACCGGCAGCAGCTG
CAAGCCTTCCTGCCCTTTCACTAAAGCCTAGCCCCCTCCCCCCTGCCTGG
GAATCAAAGGCAACCTGAAGGCAGTCACACAGCGTAGGGAACCCCCTTCT
TTCCAGCCTCCGTTTCCCCTCCCCAGAAACCTTTAAATGTAGAGACCGTC
TTTGTCTGGTGGGCCTTGGAGCCTCTTGCTTCAGATCTCCACTGTGTCAT
GCTTCAACTTGACTTCATTCTCTCTTGACATTCACCTCTCTCCCCACCCC
CAAACCTAACTGTTCGGCAGAGTAGTGGGTACACAGACAAAAGAACACCC
TCTGCCCTCCCAACCCACTCTGCAGCCTTTCCCTCCTGACTCATGGTACA
CAGAAGAAAACACCCAGCTTTCCTCCCTTATTGAAAGGTGCCTCTAATTC
AGTTACAAGCCATTCCCACACCCACCAACCCCTCCCATATGCCCTTTCAG
CAATGTCTAGCATCCAGAAGCTACAGACTTCTCCTGTCCTGCCTGGTTCA
AGC

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCCACATGCTTGTAA
CCCCAGCACTGGTTGGAGGGAGAGCTACGTGGATCCTGAGGGCTGGCTGA
CTAGCTGCAAGATTTTGCTGAAAGGACTCAGATATGGCTGTCTCTTGTGA
GACTATGCCGGGGCTTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTA
TTGGATGGATCACAAGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAG
GAGCTGAAGGGATCTGCAATCCTATAGGTGGAACAACAATATGAACTAAC
CAATACCCCCCCCCCCCAGCTCGTGTCTCTAGCTGCATATGAATGAGAAG
ATGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCATTGGTTGTGCAAAC
TTTATATGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGTGGGTG
CCCCCCCTCTTTTTCCCTTCACTGCTCTTCCTTTATCCTCTGCTCTTCCC
TCCTCTCCTTATCCCGACCTGTCTTTCTTCTCTATCTCCTCATCTTCTTT
CTCTCCATTTTCCTTCCTATTGTCCTTTTATTACATTCCCTCCCTTCCCA
CTCATTCTTCTTTTTTGTTTTCTCCCCTCTCTTTCATACTCCCTCCTATA
TTTATTGTCTTTTCCTTTATCCCCCATCTTCTTTGTCTCACTTTCTCCAT
TTTG

Query= MSMg01no541_o11.b1 MSMg01no541_o11.b1 CHROMAT_FILE:
MSMg01no541_o11.b1 PHD_FILE: MSMg01no541_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:44 2005
         (681 letters)



>mm_chr9_111389140_111390223
          Length = 1084

 Score = 1166 bits (603), Expect = 0.0
 Identities = 664/685 (96%), Gaps = 5/685 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctcaagtccatgctgatcctagagagatggatcgggcattagaaggcagatctcacc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 884 ctgctcaagtccatgctgatcctcgagagatggatcgggcattagaaggcagatcccacc 825

                                                                       
Query: 61  ttccacccctcacccacccttactccacaggtgccacagggaaaggcctcgcaggtctgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 824 ttccacccctcacccacccttactccacaggtgccacagggaaaggcctc-caggtctgg 766

                                                                       
Query: 121 ccctgccccac--c-gtgtaaggttgacaaggccacatccagctgctgcaaagagaccgg 177
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ccctgccccactgcagtgtaaggttgacaaggccacatccagctgctgcaaagagaccgg 706

                                                                       
Query: 178 cagcagctgcaagccttcctgccctttcact-aaagcctagccccctcccccctgcctgg 236
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 705 cagcagctgcaagccttcctgccctttcactaaaagcctagccccctcccccctgcctgg 646

                                                                       
Query: 237 gaatcaaaggcaacctgaaggcagtcacacagcgtagggaacccccttctttccagcctc 296
           ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct: 645 gaatcaaaggcaacctgaaagcagtcacacagcttagggaacccccttctctccagcctc 586

                                                                       
Query: 297 cgtttcccctccccagaaacctttaaatgtagagaccgtctttgtctggtgggccttgga 356
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 585 tgtttcccctccccagaaacctttaaatgcagagaccgtctttgtctggtgggccttgga 526

                                                                       
Query: 357 gcctcttgcttcagatctccactgtgtcatgcttcaacttgacttcattctctcttgaca 416
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gccccttgcttcagatctccactgtgtcatgcttcaacttgacttcattctctcttgaca 466

                                                                       
Query: 417 ttcacctctctccccacccccaaacctaactgttcggcagagtagtgggtacacagacaa 476
           ||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 465 ttcacttctctcccctcccccaaacctaactgttcggcagagtagtgggtacgcagacaa 406

                                                                       
Query: 477 aagaacaccctctgccctcccaacccactctgcagcctttccctcctgactcatggtaca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aagaacaccctctgccctcccaacccactctgcagcctttccctcctgactcatggtaca 346

                                                                       
Query: 537 cagaagaaaacacccagctttcctcccttattgaaaggtgcctctaattcagttacaagc 596
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 345 cagacgaaaacacccagctttcctcccttattgaaaggcgcctctaattcagttacaagc 286

                                                                       
Query: 597 cattcccacacccaccaacccctcccatatgccctttcagcaatgtctagcatccagaag 656
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 285 cattcccacacccgccaacccctcccatatgcccttccagcaatgtctagcatccagaag 226

                                    
Query: 657 ctacagacttctcctgtcctgcctg 681
           ||| |||||||||||||||||||||
Sbjct: 225 ctatagacttctcctgtcctgcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1084
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1074
Effective search space:   720654
Effective search space used:   720654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)