Query= MSMg01no542_h07.b1 MSMg01no542_h07.b1 CHROMAT_FILE:
MSMg01no542_h07.b1 PHD_FILE: MSMg01no542_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:30 2005
(724 letters)
>mm_chr9_33549115_33550238
Length = 1124
Score = 1259 bits (651), Expect = 0.0
Identities = 703/727 (96%), Gaps = 14/727 (1%)
Strand = Plus / Minus
Query: 6 ggaattcacccatctttgggggacatgaataaaccacgcaaaacaggccttattctcagt 65
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1035 ggaattcacccatctttgggggacatgaataaaccacgcaaaacatgccttattctcagt 976
Query: 66 atgactcataaatattttaccagagtacttacagatgcaataaagggattccttcttaca 125
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 975 atgactcataaatattttaccagagtacttacagatgcaataaagggatttcttcttaaa 916
Query: 126 aacacttttggtatttttattaattttctaaaaatgtcacttagaatgaatgtgttcagt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 aacacttttggtatttttattaattttctaaaaatgtcacttagaatgaatgtgttcagt 856
Query: 186 ttcttttctcatctatagcattgtactttccttatactggattcccactacatatgtcta 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 855 ttcttttctcatctatagcattgtactttccttatactggattcccactacatatgccta 796
Query: 246 cctatcacccacgctgctctcctgataactcatactcttatgggatatattgtattgtac 305
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cctatcatccacgctgctctcctgataactcatactcttatgggatatattgtattgtac 736
Query: 306 aatattgtatcatattgtagcataaaacataacataacttcatatcagtttgaatctagg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aatattgtatcatattgtagcataaaacataacataacttcatatcagtttgaatctagg 676
Query: 366 ttgagagaaatatccatcaggtatttcctttcctattgcattaaccatttcttctctcaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttgagagaaatatccatcaggtatttcctttcctattgcattaaccatttcttctctcaa 616
Query: 426 acttttctctattaaactatttcaacatcaacattgtcttctttttatgtcatctatata 485
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acttttctctaataaactatttcaacatcaacattgtcttctttttatgtcatctatata 556
Query: 486 ttttacactgcatgcatttaagtataagctacacacatgacagaaggtgtcattaatatt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttttacactgcatgcatttaagtataagctacacacatgacagaaggtgtcattaatatt 496
Query: 546 tctgattctggtttgtttcacttaatattccattgattccagatc--catgcattgtccc 603
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 495 tctgattctggtttgtttcacttaatattccatagattccagatcctca--cattgtccc 438
Query: 604 aaaaatggtataatttcatcactgtatgaatgaaaagtttcatgtgtatgtgtgtgtgtg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaaaatggtataatttcatcactgtatgaatgaaaagtttcatgtgtatgtgtgtgtgtg 378
Query: 664 tgcgcgcatgtgcgca------caggtgcacatatgctaatgggcatctaaactggctcc 717
|| | |||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 377 tgtg----tgtgcgcacgcgcccaggtgcacatgtgctaatggtcatctaaactggctcc 322
Query: 718 ataattt 724
|||||||
Sbjct: 321 ataattt 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1124
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1114
Effective search space: 795396
Effective search space used: 795396
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_h07.g1 MSMg01no542_h07.g1 CHROMAT_FILE:
MSMg01no542_h07.g1 PHD_FILE: MSMg01no542_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:30 2005
(288 letters)
>mm_chr9_33389987_33390677
Length = 691
Score = 503 bits (260), Expect = e-147
Identities = 280/288 (97%), Gaps = 4/288 (1%)
Strand = Plus / Plus
Query: 1 aggtagccagttttgtgcagcaagtgattttatacactgaaccaacttaacagctcatac 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aggtagccagttttgtgcagcaagtgattttatacactgaaccaacttgacagctcatac 260
Query: 61 tgatctgaaagttatcctcttaaaatcatatgagaggtccttatttgtaatgtgcctgtg 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tgatctgaaagttatcctcttaaaatcatatgagaggtccttacttgtaatgtgcctgtg 320
Query: 121 tttggaagtatgacttagaaga---taaaagtgaaatggagttataaggaatggaacctt 177
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggaagtatgatttagaagaagataaaagtgaaatggagttataaggaatggaacctt 380
Query: 178 ataaataggactgactgtaaacggccagggtctctggcaatctgatgttctcttaagacg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaataggactgactgtaaacggccagggtctctggcaatctgatgttctcttaagacg 440
Query: 238 aaaaaggagggaaggaaggaagggagggagggaggngagggagggagg 285
||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aaaaaggagtgaaggaaggaagggagggagggagg-gagggagggagg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 691
Length adjustment: 9
Effective length of query: 279
Effective length of database: 682
Effective search space: 190278
Effective search space used: 190278
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
