Query= MSMg01no542_i10.b1 MSMg01no542_i10.b1 CHROMAT_FILE:
MSMg01no542_i10.b1 PHD_FILE: MSMg01no542_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:35 2005
(650 letters)
>mm_chr9_47810681_47811730
Length = 1050
Score = 1230 bits (636), Expect = 0.0
Identities = 642/644 (99%)
Strand = Plus / Plus
Query: 7 gaattcattcgcattcttgcggcaaatcttaggatgaaatcctcgagtagtgttcggtag 66
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcattcgcattctggaggcaaatcttaggatgaaatcctcgagtagtgttcggtag 266
Query: 67 catcaggagcactatgtgttatttcattccgtgttactgagcccctctcttgtgctgtat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 catcaggagcactatgtgttatttcattccgtgttactgagcccctctcttgtgctgtat 326
Query: 127 tactttgcactcttacacccaacatgtgagaatcctgctctagcagagcgctgtcaagct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tactttgcactcttacacccaacatgtgagaatcctgctctagcagagcgctgtcaagct 386
Query: 187 tttgaattcctggcagtctgatggtgagaatgggtatcttaatttagctttattttgcaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttgaattcctggcagtctgatggtgagaatgggtatcttaatttagctttattttgcaa 446
Query: 247 atgcaaaataattcccttattatgagtaaaaattaggcattttttctcatttaaaagaca 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atgcaaaataattcccttattatgagtaaaaattaggcattttttctcatttaaaagaca 506
Query: 307 tttgtataaattttcctgttgactttgtttatactttttaagcccagttttccaccttta 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttgtataaattttcctgttgactttgtttatactttttaagcccagttttccaccttta 566
Query: 367 aaacaggatttccctgcttttcttcacaactgaagatcccttttatatacacggctgtcc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaacaggatttccctgcttttcttcacaactgaagatcccttttatatacacggctgtcc 626
Query: 427 cttgatgtgtgagatgctctgcggttttgttttgtttttttttttttttatagtttgtca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cttgatgtgtgagatgctctgcggttttgttttgtttttttttttttttatagtttgtca 686
Query: 487 tcggtttactaattttcctttttgttatggctatgcaaacatttcttgtgcaaaaaaatt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tcggtttactaattttcctttttgttatggctatgcaaacatttcttgtgcaaaaaaatt 746
Query: 547 cctttagcttagctggattctgagtcataactagatagatttttttgttacttgcaaatt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cctttagcttagctggattctgagtcataactagatagatttttttgttacttgcaaatt 806
Query: 607 ttaaagggattttgctttctcttctctcagtgctcggggagctt 650
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ttaaagggattttgctttctcttctctcagtgctcggggagctt 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_i10.g1 MSMg01no542_i10.g1 CHROMAT_FILE:
MSMg01no542_i10.g1 PHD_FILE: MSMg01no542_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:35 2005
(486 letters)
>mm_chr9_47990837_47991722
Length = 886
Score = 750 bits (388), Expect = 0.0
Identities = 439/486 (90%), Gaps = 46/486 (9%)
Strand = Plus / Minus
Query: 1 caggaaatgtttgttgtctcttcacctgagaaaggttagtgtttggaaacaacttttatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 caggaaatgtttgttgtctcttcacctgagaaaggttagtgtttggaaacaacttttatc 748
Query: 61 tggccagagaagagagagagagagaaagagagagagagagagagagagagagagagagag 120
||||||||||||||||||||||||||
Sbjct: 747 tggccagagaagagagagagagagaa---------------------------------- 722
Query: 121 agagagagagagagagagagagagagagagagagagagagagagagacttggctgaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ------------agagagagagagagagagagagagagagagagagacttggctgaggga 674
Query: 181 agcgatagagaaagaggggaattgttaatttcaattgattttctgataaggtttcatatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agcgatagagaaagaggggaattgttaatttcaattgattttctgataaggtttcatatc 614
Query: 241 ctgaagtgtgcttcaaatctgagaagtgacatctgcagagatgcccgtcagtgtctgaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctgaagtgtgcttcaaatctgagaagtgacatctgcagagatgcccgtcagtgtctgaat 554
Query: 301 cctcctgaatgtaattagatctgagacaagatagaagactcgctacggtggcccttaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cctcctgaatgtaattagatctgagacaagatagaagactcgctacggtggcccttaggg 494
Query: 361 aggaaatggtctttgaaaagaattatgttaatcaggctagccttcttcttgcatctgctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aggaaatggtctttgaaaagaattatgttaatcaggctagccttcttcttgcatctgctc 434
Query: 421 cgctgttattctgggtaaaattaataggtctaaggaagggagccgatcataatgactatc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 433 cgctgttattctgggtaaaattaataggtctaaggaagggagccgatcataatgacaatc 374
Query: 481 tggtct 486
||||||
Sbjct: 373 tggtct 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
