BAC Information

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BAC

Clone NameMSMg01-543B06
Chromosome9 (Build37)
Map Location 75,355,412 - 75,503,466
singlet/doubletdoublet
Overlap geneTmod3, Tmod2, Lysmd2, Scg3
Upstream geneLOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070
Downstream geneLOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543B06.T7 (MSMg01no543_b06.b1)MSMg01-543B06.TJ (MSMg01no543_b06.g1)
ACCAG608700AG608701
length745750
length of high quality
(start - end)		698 (48 - 745)668 (83 - 750)
definitionCHROMAT_FILE: MSMg01no543_b06.b1 PHD_FILE: MSMg01no543_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:19 2005CHROMAT_FILE: MSMg01no543_b06.g1 PHD_FILE: MSMg01no543_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,355,412 - 75,356,102)(75,502,942 - 75,503,466)
sequence
NGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCAACTTTCTCAAGTTTCTCTTGACAGTGTTGCAGTTTTAGA
TATCACTGCTCAGGCCTCTCGTGTACTTACCTATCCCATGTACATTACCA
TATATAACCCTTACATTATTCGGTCACATGTAAGATCCTGGTGCTGACAT
TTCTAACTCTTAAGAGGTGGCTCAATGAGAAGCAATTGCAACCATCGAGG
AAAGAGTATGCTGCTTGGACCAGGGCAGGAGTAATAAAAATGTGAGAAAC
GGTTAGAGACTGAAAATATTTTTTCTTTCCTCCTTTTTCCCCTTTGAGTA
TTTCTCTGTGTAGCCATGGCTGGCCTGGAACTCACTCTGTACACCAGGCT
GGCCTAGCACTAGGAGATCCACCTGCCTCTGCCTCCCATATGTTGGGATT
AAAGGCGTGCACCAGCATCGTGGCTAAGCACAGGGTGTCACGTATCCTAA
GCTGGCCCTATGAGTTCCAGGCTGGGATGGCCTTGAATTTCTGATCATTT
TTGGCTCTACTTCCTGAATTATAGGCATTATAAGTATATGTTGGGATTAT
AAGTATGTGTTACCACATTTAGTTTATGTGGTTCTGGGGAGAAGTCCAGG
GCTTCACACATGTGAAGTACTCTACTAATTGAGCTACAGCTCTAGCCTTT
CCCATGGCCCTTTAAGAAAGGTTCTGCAGTGTTGCCCCTTGCTGG

NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCTTGACAAGCCAGA
AGAAACATACAAGAAATAAATTGACTAACATAAAAGCTCATGATCAGAGA
GGAGTAAAGCTGGGCCTTGAACCCATGACCCCTGACTCCTAATCCAGGGC
CTATCGGTGTTTGTAACTGCATTTTGTGGCCATGTAAAATACTGTAGAGA
AATAATATTCTTTCTCCTTTTCCTGTTCCTCCTTCTTCTTTCTTCCTCTT
TATTCCTCCTCCTCCTCCTCCTTTTCTTAAGGCTACGTCTCATGTATCTC
TAGGTGGCTTCAAACTCCCTGTGTAACCGAGGATGACCTTGAACTCCTGA
GTGCTGGCATTAGAATCATACATCACCATTTCAGTGTGTGTGGTGCTAGG
GATCAAACCCAGGTTTCACACGTGGCATGAACTCTACCAACTGAGTTTCA
TTCTCAATGAGTGGTTTTATGCCCCCTTTGTGGTGTTCACACCAGAGGCT
ATGCGTGTAACTCACACTGTAGTCATATAATATTGACATGATTTTAAGCA
TTACACACAAAAAAAAGTCTTATAAACACCTGGGGTTTTTATCATTTACT
TATTTATTTGATGGCAGGAGCACACACCACAGCAGGCCCATAGAGGTCAA
AGAATAGCTTTCATAGTCAGTTCTCTCTTTCCACCATGTGTGTCTGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_b06.b1 MSMg01no543_b06.b1 CHROMAT_FILE:
MSMg01no543_b06.b1 PHD_FILE: MSMg01no543_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:19 2005
         (698 letters)



>mm_chr9_75355205_75356302
          Length = 1098

 Score = 1282 bits (663), Expect = 0.0
 Identities = 684/691 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcaactttctcaagtttctcttgacagtgttgcagttttagatatcactgctcagg 67
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 208 gaattcaactttctcaagtttctcttgacagtgttgcagttttagacatcactgctcagg 267

                                                                       
Query: 68  cctctcgtgtacttacctatcccatgtacattaccatatataacccttacattattcggt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cctctcgtgtacttacctatcccatgtacattaccatatataacccttacattattcggt 327

                                                                       
Query: 128 cacatgtaagatcctggtgctgacatttctaactcttaagaggtggctcaatgagaagca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cacatgtaagatcctggtgctgacatttctaactcttaagaggtggctcaatgagaagca 387

                                                                       
Query: 188 attgcaaccatcgaggaaagagtatgctgcttggaccagggcaggagtaataaaaatgtg 247
           ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 388 attgcaaccattgaggaaagagtacgctgcttggaccagggcaggagtaataaaaatgtg 447

                                                                       
Query: 248 agaaacggttagagactgaaaatattttttctttcctcctttttcccctttgagtatttc 307
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agaaacgcttagagactgaaaatattttttctttcctcctttttcccctttgagtatttc 507

                                                                       
Query: 308 tctgtgtagccatggctggcctggaactcactctgtacaccaggctggcctagcactagg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tctgtgtagccatggctggcctggaactcactctgtacaccaggctggcctagcactagg 567

                                                                       
Query: 368 agatccacctgcctctgcctcccatatgttgggattaaaggcgtgcaccagcatcgtggc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 568 agatccacctgcctctgcctcccatatgttgggattaaaggcgtgcaccagcatcgtggg 627

                                                                       
Query: 428 taagcacagggtgtcacgtatcctaagctggccctatgagttccaggctgggatggcctt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taagcacagggtgtcacgtatcctaagctggccctatgagttccaggctgggatggcctt 687

                                                                       
Query: 488 gaatttctgatcatttttggctctacttcctgaattataggcattataagtatatgttgg 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaatttctgatcatttttggctctacttcctgaattataggcattataagtatatgttgg 747

                                                                       
Query: 548 gattataagtatgtgttaccacatttagtttatgtggttctggggagaagtccagggctt 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gattataagtatgtgttaccacatttagtttatgtggttctggggagaagtccagggctt 807

                                                                       
Query: 608 cacacatgtgaagtactctactaattgagctacagctctagcctttcccatggcccttta 667
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 808 cacacatgtgaagtactctactaattgagctacagctccagcctttcccatggcccttta 867

                                          
Query: 668 agaaaggttctgcagtgttgccccttgctgg 698
           ||||||||||||||||||||||||| |||||
Sbjct: 868 agaaaggttctgcagtgttgcccctcgctgg 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_b06.g1 MSMg01no543_b06.g1 CHROMAT_FILE:
MSMg01no543_b06.g1 PHD_FILE: MSMg01no543_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:19 2005
         (668 letters)



>mm_chr9_75502399_75503466
          Length = 1068

 Score = 1000 bits (517), Expect = 0.0
 Identities = 523/525 (99%)
 Strand = Plus / Minus

                                                                        
Query: 144  gtggccatgtaaaatactgtagagaaataatattctttctccttttcctgttcctccttc 203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 gtggccatgtaaaatactgtagagaaataatattctttctccttttcctgttcctccttc 1009

                                                                        
Query: 204  ttctttcttcctctttattcctcctcctcctcctccttttcttaaggctacgtctcatgt 263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 ttctttcttcctctttattcctcctcctcctcctccttttcttaaggctacgtctcatgt 949

                                                                        
Query: 264  atctctaggtggcttcaaactccctgtgtaaccgaggatgaccttgaactcctgagtgct 323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  atctctaggtggcttcaaactccctgtgtaaccgaggatgaccttgaactcctgagtgct 889

                                                                        
Query: 324  ggcattagaatcatacatcaccatttcagtgtgtgtggtgctagggatcaaacccaggtt 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888  ggcattagaatcatacatcaccatttcagtgtgtgtggtgctagggatcaaacccaggtt 829

                                                                        
Query: 384  tcacacgtggcatgaactctaccaactgagtttcattctcaatgagtggttttatgcccc 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828  tcacacgtggcatgaactctaccaactgagtttcattctcaatgagtggttttatgcccc 769

                                                                        
Query: 444  ctttgtggtgttcacaccagaggctatgcgtgtaactcacactgtagtcatataatattg 503
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 768  ctttgtggtgttcacaccagaggctatgcgtgtaactcacactgtagtcatgtaatattg 709

                                                                        
Query: 504  acatgattttaagcattacacacaaaaaaaagtcttataaacacctggggtttttatcat 563
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708  acatggttttaagcattacacacaaaaaaaagtcttataaacacctggggtttttatcat 649

                                                                        
Query: 564  ttacttatttatttgatggcaggagcacacaccacagcaggcccatagaggtcaaagaat 623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648  ttacttatttatttgatggcaggagcacacaccacagcaggcccatagaggtcaaagaat 589

                                                         
Query: 624  agctttcatagtcagttctctctttccaccatgtgtgtctgggga 668
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588  agctttcatagtcagttctctctttccaccatgtgtgtctgggga 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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