BAC Information

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BAC

Clone NameMSMg01-543F10
Chromosome9 (Build37)
Map Location 105,758,639 - 105,864,373
singlet/doubletdoublet
Overlap geneEG665033
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik
Downstream gene1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543F10.T7 (MSMg01no543_f10.b1)MSMg01-543F10.TJ (MSMg01no543_f10.g1)
ACCAG608897AG608898
length753748
length of high quality
(start - end)		619 (74 - 692)482 (189 - 670)
definitionCHROMAT_FILE: MSMg01no543_f10.b1 PHD_FILE: MSMg01no543_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:40 2005CHROMAT_FILE: MSMg01no543_f10.g1 PHD_FILE: MSMg01no543_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,758,639 - 105,759,257)(105,863,892 - 105,864,373)
sequence
CCTCTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCGTATGGCAGAAGAATATGAAGCCGGCTTATGTCAATCAAC
ACGAACGCCTACGGTTCTGTCCATCTTCCCACAAGTCACATGACTTTACT
CTTCTTTATGCCTAAACAGTACTCCACTGCCTGCATACTCCATGTTAAAC
TGACCGAGTGTATAACAAATTCACTACTGCTTTGTCTTGTCCTGTATGTG
TGTTTCCTAAGTAGGTTTAATGTGCTTTCCTGGGCTGAGTGAGACTACAG
TTAATAAGAATGCACAGAATAAGTTTCTGGGTCAGACTTGGGGTTGTTGT
TATTGTCTTGTTCTTTTTCTGTTTTAGAGTCTGTTTTGATACACTGTTTG
AGAATAGCTCTGTTTCCAGGTTCACATGTTGGCATGATTTCTTTGGCAGC
AAAACTCAAGTCCACACAATGCAAAGCACACTAAAATAGAAAACAAGTGT
TCCCAGCACGAGCGGGTAGCTCACAAGGCAGCTTCTCCTCCCCTTTCTTT
GTTATGAATTTGTTACTCTATAAATGTCCTGGTAAAGAAAACCCACTGAC
TATAGGTAACGGGTGCTAAATGTAATCTCAGGGTCCTATGGGAACCAGCG
ACACAGAGTTTAGGGTTGTATAAATGGGAAGAAAAAAAAAAGACAATTGG
GACATTCCAATTACAAACTGTTTTTACTCAAGGGTCTAATTTGAGATGTA
GAG

GGCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTAATGTATGTTTAGGAGAA
TGAATACAATCCTCAAGATAGGATGTGTTTACATTACAGTTTCTTCAGGG
GAACTTTGTTTCAGTTTTAGAAGAAGAAGAAGAAGAAGAAGAAAAAAGGA
AACAGGAAATGTTGATTTCTCCAGAAAAGGCAACAGATCCCCAAAGACAC
TTGATTTCATACGGTGATTGTAAAACTTAAATCATAATTGTATCGCTTGT
GTTGCAAATAAATCTCCCGTAATAATACTTCCTAGAGACTTTTCTGGCTC
AGGTGGGCGTCTTTTCTTGCTTAAGTAACTCTGCTTGAGAAGGGGATCCC
AGTGAGCAAATCTTTGCTCCCTGGGAACTCACAACAGCCCGAGCTTCCCT
TTGGACCCGTGAGGGTGAGTTAGAAGTTGATTTTCCCCTCCAGCTCTGGC
TTGCCAATATTCTTGCCCCCAGGTGTCACTCTGTGCTTGCTGTGTGGTCA
ACAACTGCTAAAGCCTGGACAGATCTGAGAGTCCTCTGGAGAGCAAGCTG
TGACACTCACATTCAGGAACCCGGGACACCCTGCGCAGATCACTTGGAAC
TCTGTAGTGAGTGGGTTCAGAGCATAAGGGATACATTCTTTGGGGACAAA
CCATTTTACTCGCACACAATAAATTTTTCTTATTAATGAAAAGCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_f10.b1 MSMg01no543_f10.b1 CHROMAT_FILE:
MSMg01no543_f10.b1 PHD_FILE: MSMg01no543_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:40 2005
         (619 letters)



>mm_chr9_105758439_105759457
          Length = 1019

 Score = 1197 bits (619), Expect = 0.0
 Identities = 619/619 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgaagccggcttatgtcaatcaacacgaacgcctacggttctgtccatcttcccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgaagccggcttatgtcaatcaacacgaacgcctacggttctgtccatcttcccaca 260

                                                                       
Query: 61  agtcacatgactttactcttctttatgcctaaacagtactccactgcctgcatactccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcacatgactttactcttctttatgcctaaacagtactccactgcctgcatactccat 320

                                                                       
Query: 121 gttaaactgaccgagtgtataacaaattcactactgctttgtcttgtcctgtatgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaaactgaccgagtgtataacaaattcactactgctttgtcttgtcctgtatgtgtgt 380

                                                                       
Query: 181 ttcctaagtaggtttaatgtgctttcctgggctgagtgagactacagttaataagaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctaagtaggtttaatgtgctttcctgggctgagtgagactacagttaataagaatgc 440

                                                                       
Query: 241 acagaataagtttctgggtcagacttggggttgttgttattgtcttgttctttttctgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaataagtttctgggtcagacttggggttgttgttattgtcttgttctttttctgtt 500

                                                                       
Query: 301 ttagagtctgttttgatacactgtttgagaatagctctgtttccaggttcacatgttggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagagtctgttttgatacactgtttgagaatagctctgtttccaggttcacatgttggc 560

                                                                       
Query: 361 atgatttctttggcagcaaaactcaagtccacacaatgcaaagcacactaaaatagaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatttctttggcagcaaaactcaagtccacacaatgcaaagcacactaaaatagaaaa 620

                                                                       
Query: 421 caagtgttcccagcacgagcgggtagctcacaaggcagcttctcctcccctttctttgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagtgttcccagcacgagcgggtagctcacaaggcagcttctcctcccctttctttgtt 680

                                                                       
Query: 481 atgaatttgttactctataaatgtcctggtaaagaaaacccactgactataggtaacggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgaatttgttactctataaatgtcctggtaaagaaaacccactgactataggtaacggg 740

                                                                       
Query: 541 tgctaaatgtaatctcagggtcctatgggaaccagcgacacagagtttagggttgtataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctaaatgtaatctcagggtcctatgggaaccagcgacacagagtttagggttgtataa 800

                              
Query: 601 atgggaagaaaaaaaaaag 619
           |||||||||||||||||||
Sbjct: 801 atgggaagaaaaaaaaaag 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_f10.g1 MSMg01no543_f10.g1 CHROMAT_FILE:
MSMg01no543_f10.g1 PHD_FILE: MSMg01no543_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:40 2005
         (482 letters)



>mm_chr9_105863692_105864573
          Length = 882

 Score =  932 bits (482), Expect = 0.0
 Identities = 482/482 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaaaaaggaaacaggaaatgttgatttctccagaaaaggcaacagatccccaaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagaaaaaaggaaacaggaaatgttgatttctccagaaaaggcaacagatccccaaagac 623

                                                                       
Query: 61  acttgatttcatacggtgattgtaaaacttaaatcataattgtatcgcttgtgttgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acttgatttcatacggtgattgtaaaacttaaatcataattgtatcgcttgtgttgcaaa 563

                                                                       
Query: 121 taaatctcccgtaataatacttcctagagacttttctggctcaggtgggcgtcttttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taaatctcccgtaataatacttcctagagacttttctggctcaggtgggcgtcttttctt 503

                                                                       
Query: 181 gcttaagtaactctgcttgagaaggggatcccagtgagcaaatctttgctccctgggaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcttaagtaactctgcttgagaaggggatcccagtgagcaaatctttgctccctgggaac 443

                                                                       
Query: 241 tcacaacagcccgagcttccctttggacccgtgagggtgagttagaagttgattttcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcacaacagcccgagcttccctttggacccgtgagggtgagttagaagttgattttcccc 383

                                                                       
Query: 301 tccagctctggcttgccaatattcttgcccccaggtgtcactctgtgcttgctgtgtggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tccagctctggcttgccaatattcttgcccccaggtgtcactctgtgcttgctgtgtggt 323

                                                                       
Query: 361 caacaactgctaaagcctggacagatctgagagtcctctggagagcaagctgtgacactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caacaactgctaaagcctggacagatctgagagtcctctggagagcaagctgtgacactc 263

                                                                       
Query: 421 acattcaggaacccgggacaccctgcgcagatcacttggaactctgtagtgagtgggttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acattcaggaacccgggacaccctgcgcagatcacttggaactctgtagtgagtgggttc 203

             
Query: 481 ag 482
           ||
Sbjct: 202 ag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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