CCCTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATCAATGTCTCCTTACCTGACATCAAGGCTGATTTACCTG
ATCTGTGTACACTTAGTATTCATAGTTTACCAAAGTAGCAGAGATTCTGT
TTTTAGTGAAGTATTATTAATTTCTTTTATAACAGGATAATAAGGGATAG
ATACTTTACTAATTGCTCTTATAGTGCAATGCTATTTCATATCTTAAAAA
TGCAAAATTAATTTTATGATAAAAATTTAAAAATTCTAATATATACAGTG
ATACGCAATCCAGAGCTTGTAGGAGTTATGGTAGAATCTCAGATATATTT
TGGATATTAAGATGAGTATTATAGCCGGGTGGTGGTGACACACGCCTTTA
ATTCCGGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGCTCAAGGCTA
GCCTGGTCTACAGAGTGAGTTCCAGAACAGCCAGGGCTACACAGATAAAC
CCTGTCTCGAAAAACAAAAAAACAAAAACAAAAAAAAAGATGAGTATTGT
AAATGAACTCCAAACTGATAGGTTTTCTATTCCAAATCCAATTGTGTAAT
TCTGCAGTTAAACTATACCTAACTGACTAACTCTGAATTATTGTGGGTAA
GTATGAACAAACTTCCTATGAACCACTAGATGGTTCCCAGGCTCTCCTAC
TTTGGTGGAAGCCTTTATCATTGTGTTTCAGGCAGATGATCAAA

NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTATATATCCAGTCT
TTTAGCCTGTGTCTTTTTTATTGGGAAATTGAGTCCATTAACATTGAGAA
ATATTAATGGCCAATGACTGTCAGTTCCTGTTATTTTGTTGTTCGAGGTG
GGATCATTGTGTGTCATTCTCTTCTTTTGGGTTTGTTCTGAGATGATGAA
TTTCCTGCATTTTCTCAGGTGTAGTTACCTTACTTGTATAGGAGTTTTCG
CTCTAGTATCCTCTGTAGGGCTAGATTGGTAGAAAGAGATTGTTTACATT
TAGTTTTGTCATGAAATGCCTTGGTTTTTCCATCTATAGTGATTGAGGGT
TTTACTTGGTATAGAAGTCTGGGCTGGCATCTGTGGTTTCTTAGGAGCTG
CATGATATCTGTCCAGAATATTCTGGTTTTGAAATTCTCTGTTGAAAAAT
CAGGTATAATTCTAAAAGGCCTGCCTCTATATTTTAATATTCTTTCTCCA
TTCTGTACATTTAGTGCTTTGATTATTATGTGATGGGATGATTTACTCTT
CTGCTCCAATCTATTTGGCGTTCTGTAGGTTTCTTTTGCATTTATAACCA
TCTCTTTCTTTAGGGTAACTTTATTCAATGATTTTCTTTTAAATATTTTC
TGAAACATTGAACTGGCGTACTGGCTAGTTCTGTATCAGCTTGGCN

Query= MSMg01no543_i04.b1 MSMg01no543_i04.b1 CHROMAT_FILE:
MSMg01no543_i04.b1 PHD_FILE: MSMg01no543_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:54 2005
         (577 letters)



>mm_chr9_4536113_4537088
          Length = 976

 Score = 1064 bits (550), Expect = 0.0
 Identities = 568/574 (98%), Gaps = 1/574 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatcaatgtctccttacctgacatcaaggctgatttacctgatctgtgtacac 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatcaagg-ctccttacctgacatcaaggctgatttacctgatctgtgtacac 262

                                                                       
Query: 64  ttagtattcatagtttaccaaagtagcagagattctgtttttagtgaagtattattaatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttagtattcatagtttaccaaagtagcagagattctgtttttagtgaagtattattaatt 322

                                                                       
Query: 124 tcttttataacaggataataagggatagatactttactaattgctcttatagtgcaatgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcttttataacaggataataagggatagatactttactaattgctcttatagtgcaatgc 382

                                                                       
Query: 184 tatttcatatcttaaaaatgcaaaattaattttatgataaaaatttaaaaattctaatat 243
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 383 tatttcatatcttaaaaatgcaaaattaattttatgataaaatttttaaaattctaatat 442

                                                                       
Query: 244 atacagtgatacgcaatccagagcttgtaggagttatggtagaatctcagatatattttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atacagtgatacgcaatccagagcttgtaggagttatggtagaatctcagatatattttg 502

                                                                       
Query: 304 gatattaagatgagtattatagccgggtggtggtgacacacgcctttaattccggcactt 363
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 503 gatattaagatgagtattatagccgggcggtggtgacacacgcctttaattccggcactt 562

                                                                       
Query: 364 gggaggcagaggcaggcagatttctgagctcaaggctagcctggtctacagagtgagttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gggaggcagaggcaggcagatttctgagctcaaggctagcctggtctacagagtgagttc 622

                                                                       
Query: 424 cagaacagccagggctacacagataaaccctgtctcgaaaaacaaaaaaacaaaaacaaa 483
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caggacagccagggctacacagataaaccctgtctcgaaaaacaaaaaaacaaaaacaaa 682

                                                                       
Query: 484 aaaaaagatgagtattgtaaatgaactccaaactgataggttttctattccaaatccaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaaaaagatgagtattgtaaatgaactccaaactgataggttttctattccaaatccaat 742

                                             
Query: 544 tgtgtaattctgcagttaaactatacctaactga 577
           ||||||||||||||||||||||||||||||||||
Sbjct: 743 tgtgtaattctgcagttaaactatacctaactga 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 976
Length adjustment: 10
Effective length of query: 567
Effective length of database: 966
Effective search space:   547722
Effective search space used:   547722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)