TTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCTCTGAGGAACAGACTGGGAGGAAGAAGCAGCCCATTTA
CCAGCCAGCTAATTGGTCAAGAAAAAAGCCAAAAGCGGCTGGCGAAAGCC
AGCGTACTGTTCAACCTCCCGGCAGTCGGTTTCAAGGTCCGCCCTATGCG
GAGCCCCCGCCCTGCGTAGTGCGTCAGCAATGCGCAGAGAGGCAATGCGC
AGATAGATGCGCAGAGAGGCAATGCGCAGAGAGATGCTCAGAGAGTCATT
GCTCATAGAGATGCGCACAGAGGCATTGCTCACAGAGATGTGCAGAGAGG
CAGTGCTCTTATAGGCATTGCGCACATAGGCAGTGCGCAGACTCATTCAC
TCCCTGAGAGGAACACTGGAAAACACAACAGGTATTTCCAGTCTTTGAAT
GAACCGAGGGTGGGCGTGTCCTCGCTCCGGTATAACACTTACAAATTATA
TAAATTGCCGAGTCTGTCCGTAAATACGGAACCAATGTTTAATTTACCTT
GGTGCATTTAGACAGGCTCGCTGGCATGGTACTAACTCCTTGCTGACTGG
CAAACGGTTGCATAAGCCGCTCTCCCTATTATGGGCAATTATTTGGAATG
GAGAGTGCTTTTGGCCATAATTTGCTCAAGCTCAGGTCACTAGCAAATGC
AGCTGCTTTTTTTTCCTGACCTCACATATTTGTACTTTTTGTCCTGCCTC

NGGGCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTATTTTTCTCTGTCA
TTGGTTTTTGGAACATTGATTTTTATGATTTTCGCCATTTTAAAATCTAT
CAGTTCCAAAACAATGGTTAACAGATCATGCAGCCATTCTGGGTTTGGAA
TTTGTATTTATTTTTATGTAAAAAAAAAACCACACCTGTTTATTTTACAC
AGAATAGTATACACATGGAGGTCAGAGGATAGCTTGCTAAAATTGAACCT
CAAGTTCTCATGTTGGTGGCAAGCATTTTTTTGCCCTTGAACAGATTTAT
GTTACTAGCCACCAGCTTACTTTTAAACAAACATACAAGACAAAGTTTTA
TTAATGATTTGCATTAAATACTACATACTTAAAAGGGTTTTTTTTTATCT
CTTATCAAAGAGTATAGTAAGTGTTGCCAAAGAAAATCATAGAAATGTAA
AAATGAAATTCCTTGTTTAAATATAGAAAATGTCAACTGGGCTAAAACAA
TCAGAGTTTAAAATTACTGTGGTATTACTTTCTTAAGATGCTATTTAATA
CTTTATTTCTTTACTTAGTGGTGGCAGTTAGCAACCTTTATATTTCCATT
CACGATGAGTTTTTTTTCTTTTCAATTTATATTGACAAGCACACATTTAA
ATAACAAGTCCCTGAGAGCTGAGACTTTCAATTAAAACTGCATACAAN

Query= MSMg01no543_o05.g1 MSMg01no543_o05.g1 CHROMAT_FILE:
MSMg01no543_o05.g1 PHD_FILE: MSMg01no543_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:23 2005
         (617 letters)



>mm_chr9_5790128_5791143
          Length = 1016

 Score = 1151 bits (595), Expect = 0.0
 Identities = 612/619 (98%), Gaps = 5/619 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtatttttctctgtcattggtttttggaacattgatttttatgattttcgccatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtatttttctctgtcattggtttttggaacattgatttttatgattttcgccatttta 260

                                                                       
Query: 61  aaatctatcagttccaaaacaatggttaacagatcatgcagccattctgggtttggaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatctatcagttccaaaacaatggttaacagatcatgcagccattctgggtttggaatt 320

                                                                       
Query: 121 tgtatttatttttatgtaaaaaaaaaa--ccacacctgtttattttacacagaatagtat 178
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 321 tgtatttatttttatgtaaaaaaaaaaacccacacctgtttattttacacagaatagtat 380

                                                                       
Query: 179 acacatggaggtcagaggatagcttgctaaaattgaacctcaagttctcatgttggtggc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacatggaggtcagaggatagcttgctaaaattgaacctcaagttctcatgttggtggc 440

                                                                       
Query: 239 aagcatttttttgcccttgaacagatttatgttactagccaccagcttacttttaaacaa 298
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 aagcatttttttgcccttgaacagattcatgttactagccaccagcttacttttaaacaa 500

                                                                       
Query: 299 acatacaagacaaagttttattaatgatttgcattaaatactacatacttaaaagggttt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 501 acatacaagacaaagttttattaatgatttgcattaaatactacatacttaaaagg--tt 558

                                                                       
Query: 359 ttttttatctcttatcaaagagtatagtaagtgttgccaaagaaaatcatagaaatgtaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttttttatctcttatcaaagagtatagtaagtgttgccaaagaaaatcatagaaatgtaa 618

                                                                       
Query: 419 aaatgaaattccttgtttaaatatagaaaatgtcaactgggctaaaacaatcagagttta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaatgaaattccttgtttaaatatagaaaatgtcaactgggctaaaacaatcagagttta 678

                                                                       
Query: 479 aaattactgtggtattactttcttaagatgctatttaatactttatttctttacttagtg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaattactgtggtattactttcttaagatgctatttaatactttatttctttacttagtg 738

                                                                       
Query: 539 gtggcagttagcaacctttatatttccattcacgatgagttttttttcttttcaatttat 598
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 739 gtggcagttagcaacctttatatttccattcaggatgagttttttt-cttttcaatttat 797

                              
Query: 599 attgacaagcacacattta 617
           |||||||||||||||||||
Sbjct: 798 attgacaagcacacattta 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1016
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1006
Effective search space:   610642
Effective search space used:   610642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)