Query= MSMg01no545_j24.b1 MSMg01no545_j24.b1 CHROMAT_FILE:
MSMg01no545_j24.b1 PHD_FILE: MSMg01no545_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:39 2005
(686 letters)
>mm_chr9_10850121_10851206
Length = 1086
Score = 319 bits (165), Expect = 4e-91
Identities = 205/223 (91%), Gaps = 8/223 (3%)
Strand = Plus / Plus
Query: 7 gaattcccaaactttacaatggaaaggaagcaaggaacttgaatctaaatacaacaataa 66
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 207 gaattcccaaactttacaatggaaaggaagcaaggaacttgagtctaaatacaacaataa 266
Query: 67 gtcacattttctatttaataacaactgtacatggagtatggcttcctcattcatcatcga 126
|||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 267 gtcacattttttatttaataacaactgtacacggagcatggcttcctcattcatcatcga 326
Query: 127 acatcattagcaactacgtttttcacatggtgtgaaatggtttgaactctgtcataatat 186
||||| |||||| ||||||||||||| || ||||||| |||||||||||| |||||||||
Sbjct: 327 acatccttagcagctacgtttttcacgtgttgtgaaacggtttgaactctctcataatat 386
Query: 187 gatcctatttgacattttgccatccttctgtgtatttttttta 229
|||||||||||||||||||||||||||||||||||
Sbjct: 387 --------ttgacattttgccatccttctgtgtatttttttta 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_j24.g1 MSMg01no545_j24.g1 CHROMAT_FILE:
MSMg01no545_j24.g1 PHD_FILE: MSMg01no545_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:39 2005
(666 letters)
>mm_chr9_11009085_11010153
Length = 1069
Score = 1151 bits (595), Expect = 0.0
Identities = 650/671 (96%), Gaps = 7/671 (1%)
Strand = Plus / Minus
Query: 1 tggtaatatgcttggacttcgatctgacctgtgggcctttgggctgcttctgcctggctt 60
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 869 tggtaatatgcttggccttcgacctgacctgtgggcctttgggctgcttctgcctggctt 810
Query: 61 ccaaaactctggctttgtctcttggcttcaagacactggcctgacctctgatgcagtagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ccaaaactctggctttgtctcttggcttcaagacactggcctgacctctgatgcagtagg 750
Query: 121 aagctatgagctggaataaaatgagaatggttgggtggggttatgataggcagatgaggg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 749 aagctatgagctggaataaaatgagaatggttgggtggggttatggtaggcagatgaggg 690
Query: 181 taaaggctcacttggttttcagggacctggccaggcctctggtgcagtagaaggcttcta 240
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 689 tagaggctcacttggttttcagggacctggccaggcctctggtgcggtagaaggcttcta 630
Query: 241 ccagaagtgagggctaagacatggtgactggcagatatttatcttatggaagattcattt 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 629 ccagaagtgagggctaagacatggtgactggcagatatttattttatggaagattcattt 570
Query: 301 aagcatatagaaggtgttcatggcccagatttcatcaatctattaatactttctttttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagcatatagaaggtgttcatggcccagatttcatcaatctattaatactttctttttct 510
Query: 361 tagcccagtagatggaactggtttctttgtttcatttattatagttattaatcctcaaat 420
||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||
Sbjct: 509 tagcccagtagatggaactggttgctttgtttcatttattgtagttattaaccctcaaat 450
Query: 421 attttttcaggtctatgctatttagttatttctagcaatagatt-----catactctaac 475
|||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct: 449 attttttcaggtctatgctatttagttatttctagcaatagattattaacata-t-taac 392
Query: 476 attatggttttattgcagaaagaaataagcaagctgatgcattaacttgccatatttttc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attatggttttattgcagaaagaaataagcaagctgatgcattaacttgccatatttttc 332
Query: 536 cttctctagatgaaaattgggaaagtgtatgtatctctcactgaagatgtacttactgga 595
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 331 cttctccagatgaaaattgggaaagtgtatgcatctctcactgaagatgtacttactaga 272
Query: 596 acattgcagatccatttattcatttctgtttcttctggctatttcctacagattccaagg 655
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 271 acattgcagatccatttattcatttttgtttcttctggctatttcctacggattccaagg 212
Query: 656 aaaatgactga 666
|||||||||||
Sbjct: 211 aaaatgactga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1069
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1059
Effective search space: 694704
Effective search space used: 694704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
