CACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTATAATGAAGTTTACAGCTCAAGGACATCACTTTCTGCTTT
ATTTTTAATCAAATTAAAACTTCAAAGGAAGTCAATATAAAAATCTTTTA
ACTCCCTATCCTTTATTCTGTTAGATTCTGAAGAAGGACTAGATAATTCC
TTTCCAAGTTTCTTAGATTAGGTTAGATTAAATGTGACCTACACAGACAC
AAATTAAAAGCCCTATAATTAAACAACTTCTATAGAACCTTAAGCAGCTG
ATGAGTGTTTTTGAGGCTGGGGCACTCTGAAAACATTTGTGAGAGTGTTG
TCTGATAACTGTCCCTTGTTCATTTTCAAACAGAATTAAGACATTGGAAC
AAACAGAATGGAAGCCACAAAACAGGTTGGGCAGTTCAAAGTTAAGTATA
GATTCTACATAGTTGGGAACAATACAAATCTAGGCAGCTAACACTCCCCT
CAACATTTTCTGGAATGCTTTCTGAATAGAACTCTTGGGCCTTCCTTGTC
TTGTTAGTATTTGTATATGCACACCCCCTATCCTGTACAAGTCTTCCCAA
GAAGCCTCTTTTCCGGAGGGGTTAGACATTTGAGAAAGAACATTCCAGTC
CCTTCCACTTTGAGAGATCTCAAAAGCCTGGGATGAAACTGCTTTTCTCT
TCATTTATAAAGGAAAATCTGGTAGCCCCTGGAGAACAAGGCGGATAAAT
AATATAAATACCCCAATTN

CACGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTGTCTCTCTTTGTCTCTCTC
TTACACACACACACACACACACACACACACACACACACACACACACACAC
ACACAACATCTTTATAATTTGTAAGCCCCATGTGGTTTTCCCCNATTGGG
AGTAAAAACTTTTTGTTTTTTATATTTTTTTTAGTCTGACAAAGTTTTTT
CGCGTAACGATGTTCATTTTTTATTAATTTTTTTTTTTTTTTCTCAACAC
ATTTTATATTGTTAATGATTAATTATTTTTTTATCGAATTATTGCGGTTT
TATTTTATTTTTTTTTCTTTACTATGTATTACTTTTTTATATACAATTAT
ACCTTTATTTTTTTTTTCGTTGCTAATATTCTCTTTTTTTTTGATATTTT
TGTTTCTTTCGTGTTTCATTTTTTTTTCTTTAATTATTTTTAATCTCTTC
ACTATTATTACAGTTTTTTTTTTTTTATTTTAGCATTTTCTACTTTAATA
TTAATTTTTTACTAATTTTATATTATACATTTTTTTATATTATTTTGCTC
ATTATGTTTTTATTAATAATTATAATTGTTTTTATATACAATTTTCTACT
TGTTTTTATGGATTGTTATTATTTTTATAGCATTTTTATTTGATTTAGTT
CAATCGCTTGATTTTTATTACTTTTCTATTACCCTTAGATTACCTTTCTT
ATTCACCCTTCTTTTTTGTTCTTT

Query= MSMg01no548_c05.b1 MSMg01no548_c05.b1 CHROMAT_FILE:
MSMg01no548_c05.b1 PHD_FILE: MSMg01no548_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:58 2005
         (481 letters)



>mm_chr9_32728670_32729549
          Length = 880

 Score =  785 bits (406), Expect = 0.0
 Identities = 456/478 (95%), Gaps = 10/478 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctataatgaagtttacagctcaaggacatcactttctgctttatttttaatc 63
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 622 ggaattctctataatgaagtttacaactcaaggacatcgctttctgctttatttttaatc 563

                                                                       
Query: 64  aaattaaaacttcaaaggaagtcaatataaaaatcttttaactccctatcctttattctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaattaaaacttcaaaggaagtcaatataaaaatcttttaactccctatcctttattctg 503

                                                                       
Query: 124 ttagattctgaagaaggactagataattcctttccaagtttcttagattaggttagatta 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttagattctaaagaaggactagataattcctttccaagtttcttagattaggttagatta 443

                                                                       
Query: 184 aatgtgacctacacagacacaaattaaaagccctataattaaacaacttctatagaacct 243
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 442 aatgtgacctacacagacacaaattaaaagccctgtaattaaacaacttctatagaacct 383

                                                                       
Query: 244 taagcagctgatgagtgtttttgaggctggggcactctgaaaacatttgtgagagtgttg 303
           ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 382 taagcagctaatgagtgtttttgaggctggagcactctgaaaa-atttgtgagagtgttg 324

                                                                       
Query: 304 tctgataactgtcccttgttcattttcaaacagaattaagacattggaacaaacagaatg 363
           |||||||||| |||| |||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 323 tctgataactatcccatgttcattttcaaacacaattacgacattggtacaaacagaatg 264

                                                                       
Query: 364 gaagccacaaaacaggttgggcagttcaaagttaagtatagattctacatagttgggaac 423
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaaccacaaaacaggttgggcagttcaaagttaagtatagattctacatagttgggaac 204

                                                                     
Query: 424 aatacaaatctaggcagctaacactcccctcaacattttctggaatgctttctgaata 481
                    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ---------ctaggcagctaacactcccctcaacattttctggaatgctttctgaata 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space:   409770
Effective search space used:   409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)