CTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACTGATGAAATGTTTGGATGACTAGACTTTCCTTAGAATTAATT
ATACCCCAGATTTTTCTCTTTTCTGCTAATACTGTTTTCCTATGTTGTCT
GTTTTTTCCTTTATATCTTTACCACGTTGATTATAGTGAAAGCTGAAGTT
AACATTTAAAAGGCCTCAGCCAAGTTAAACATGCTACAATATTCATTGAC
TGGTTAGAACTAAAGATTTTGTGCAGAGTTGGAGCATTCAGGTTGAGAGC
CAAATCATTTTAAGGTATCTTTAATTTTCTTTATTGCCTTTCACCCTCCA
CCTCTATGTTTATAGTAGTCTATGAAAATCCTTTTGGAATGTACTGCCAG
GTTACTGGCTCCTACCAAGCCCAGGGCTAAGAATGTCATCCAACAAAAAT
CATGGAGAGTCGCCAGTTTTGCTGTTACTCACTTTTGATGTTGTCAACAA
TGTGTTTACAAAGTGTAATGATTATGACTTTATTTTGATATGTTACTATA
AAAAGTTCATGAACCTTGTGCTGCATTGAAACTTGTTATTCTGGGGGTGG
GGATCTGAATCCATGATTGCAAGCCACGGTTCTATTTGGCTGGAGAATAA
GCTATTTCTTACTACCCTTGAGATAAAACAGTGTTTTTCTGGCAACCGAT
TCTGACAAGCAACATATGGCTTCAGCTATGATCTAN

TATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGGAAATTGGACATAGTACTACCGGAGGACCCAG
CAATACCTCTCCTGGGCATATATTCAGAAGATGCCCCAACTGGTAAGAAG
AACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA
AACACATGATACTCAAGAAGAATATTTCAGTGATCTTGCN

Query= MSMg01no548_g18.b1 MSMg01no548_g18.b1 CHROMAT_FILE:
MSMg01no548_g18.b1 PHD_FILE: MSMg01no548_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:20 2005
         (537 letters)



>mm_chr9_33450424_33451360
          Length = 937

 Score =  977 bits (505), Expect = 0.0
 Identities = 526/533 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttactgatgaaatgtttggatgactagactttccttagaattaattatacccca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttactgatgcaatgtttggatgactagactttccttagaattaattatacccca 264

                                                                       
Query: 65  gatttttctcttttctgctaatactgttttcctatgttgtctgttttttcctttatatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatttttctcttttctgctaatactgttttcctatgttgtctgttttttcctttatatct 324

                                                                       
Query: 125 ttaccacgttgattatagtgaaagctgaagttaacatttaaaaggcctcagccaagttaa 184
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaccacattgattatagtgaaagttgaagttaacatttaaaaggcctcagccaagttaa 384

                                                                       
Query: 185 acatgctacaatattcattgactggttagaactaaagattttgtgcagagttggagcatt 244
           | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 385 atatgctacaatattcattgactggttagaattaaagattttgtggagagttggagcatt 444

                                                                       
Query: 245 caggttgagagccaaatcattttaaggtatctttaattttctttattgcctttcaccctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggttgagagccaaatcattttaaggtatctttaattttctttattgcctttcaccctc 504

                                                                       
Query: 305 cacctctatgtttatagtagtctatgaaaatccttttggaatgtactgccaggttactgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 cacctctatgtttatagtagtctatgaaaatccttttggaatgtactgctaggttactgg 564

                                                                       
Query: 365 ctcctaccaagcccagggctaagaatgtcatccaacaaaaatcatggagagtcgccagtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcctaccaagcccagggctaagaatgtcatccaacaaaaatcatggagagtcgccagtt 624

                                                                       
Query: 425 ttgctgttactcacttttgatgttgtcaacaatgtgtttacaaagtgtaatgattatgac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgctgttactcacttttgatgttgtcaacaatgtgtttacaaagtgtaatgattatgac 684

                                                                
Query: 485 tttattttgatatgttactataaaaagttcatgaaccttgtgctgcattgaaa 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttattttgatatgttactataaaaagttcatgaaccttgtgctgcattgaaa 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)