BAC Information

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BAC

Clone NameMSMg01-548M14
Chromosome9 (Build37)
Map Location 22,174,983 - 22,175,487
singlet/doubletsinglet
Overlap geneAnln
Upstream geneIlf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603
Downstream gene9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805, Bmper
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548M14.T7 (MSMg01no548_m14.b1)MSMg01-548M14.TJ (MSMg01no548_m14.g1)
ACCAG613051AG613052
length775731
length of high quality
(start - end)		332 (70 - 401)584 (73 - 656)
definitionCHROMAT_FILE: MSMg01no548_m14.b1 PHD_FILE: MSMg01no548_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:48 2005CHROMAT_FILE: MSMg01no548_m14.g1 PHD_FILE: MSMg01no548_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCCGCGG
AATTCCAAGAAATTTCACAAACCACCCTGACCTTGTTGCTAGAATTCTCC
TAACGTTGATAGCCATGATTTAATAGCTGTGATGTTAATAGCTGACCCAT
AAGTTCAAAACATACTGCTGCTTTGCTGACCAACCACAAGGGCAGGCAGA
GTGAGGGACTAGGCCAAAGGGTTACTTAGTCACCCTATACAAACCAACCA
ATGCCTGAAAGGGTTACTTGCTACACCAATTAGAATAAGCCAGCTAGCCG
GGCGTGGTGGCACACACCTTTAGTTCCAGCACTCGGGAGGCAGAGGCAGG
CGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC
AGCCAGTGTTATACAGAGAAACCCTGTCTCGAAAAAAACAAAAAACAAAC
AAACAAAATAGAATAAGCCAGCTAACCCCTGTTGCCTAAATCTGCCCCTA
ACAGGGTATAAAAAGTGTGCTCTTTTCTTTGTTCTGGGTCTCTCCTCTTG
CCTGCGTGCTGAGGGATTTCCCCCCAACAGGTTGGGTAAAAGTAAAAACC
TTCTTATCCAATCTTATCTTCCTCAGCCTATCTAACTTAAACACTCCTTG
TGGGATATTCCAGCAAATGGAGAATTTTCTTGTTGGGCCTTTTGGTGAAA
TGAAAGGGAACTCTTTTGGGATGGAACGTCCCTGACCCCTTACAATAGGG
TCTTTGTTCTTACTTTATCTATTTG

CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTAAATTCAGGTAAATGCCAGTATT
GGTGGGAAGGAGTTAGGAAGTAAGGAGTCAAGACAAAGGAAAGGCTGGTA
ACTGATTGGTAGGCGAAAGGGAGGAGAATCCTTTGTGAGAAAGCAAGGTG
GGAACTGCAGGTCCTGACAGCTCTGGGGGCGGAGCCTGTCTGTCAACACT
GTGTCCACTGCTGGGCACGAGAGGTGCTCACCTCTGCATGGAACATAGTG
GATGAAATACTTGGAAAGAGAGATGGCTAGCCTAGAAACAAGGGATCTAG
ATGATAGAATAGAGATCAGTCGGGCTCTGTATTAGTTACTTTTCTGTTGC
TGTGATAAAACACCATGACAGAAAGCATCTTAAGGAAGAAAGGGTTGTTT
TGAAACAGTTCAATAGGACAAGTGAAATGAACAAACTGAAGTCATTGGGA
AGTGGTTGCAATGACGAGTTACGAAATCCACCTTGGATGGAGGGGTAAGA
AAATAGGTTAGAAACAAGGAAGAAAAGCATCAAAGAGGTAAGAGCAACCA
CTGGTGGGTGTGGGGGCAGGGAGAGGCTGGAGGCAGGGTGGGGTGTATGG
AGAACACAAAGTGTTTCAGGGGAGGCTAAGTTGGAGTGATGGTGAAGGAA
TTGGAGNAGCCAAGGTGTTGCTTGACTAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_m14.g1 MSMg01no548_m14.g1 CHROMAT_FILE:
MSMg01no548_m14.g1 PHD_FILE: MSMg01no548_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:48 2005
         (584 letters)



>mm_chr9_22174983_22175966
          Length = 984

 Score =  969 bits (501), Expect = 0.0
 Identities = 504/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtaaattcaggtaaatgccagtattggtgggaaggagttaggaagtaaggagtcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttgtaaattcaggtaaatgccagtattggtgggaaggagttaggaagtaaggagtcaag 446

                                                                       
Query: 61  acaaaggaaaggctggtaactgattggtaggcgaaagggaggagaatcctttgtgagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaaaggaaaggctggtaactgattggtaggcgaaagggaggagaatcctttgtgagaaa 386

                                                                       
Query: 121 gcaaggtgggaactgcaggtcctgacagctctgggggcggagcctgtctgtcaacactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaaggtgggaactgcaggtcctgacagctctgggggcggagcctgtctgtcaacactgt 326

                                                                       
Query: 181 gtccactgctgggcacgagaggtgctcacctctgcatggaacatagtggatgaaatactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtccactgctgggcacgagaggtgctcacctctgcatggaacatagtggatgaaatactt 266

                                                                       
Query: 241 ggaaagagagatggctagcctagaaacaagggatctagatgatagaatagagatcagtcg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaaggagagatggctagcctagaaacaagggatctagatgatagaatagagatcagtcg 206

                                                                       
Query: 301 ggctctgtattagttacttttctgttgctgtgataaaacaccatgacagaaagcatctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggctctgtattagttacttttctgttgctgtgataaaacaccatgacagaaagcatctta 146

                                                                       
Query: 361 aggaagaaagggttgttttgaaacagttcaataggacaagtgaaatgaacaaactgaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aggaagaaagggttgttttgaaacagttcaataggacaagtgaaatgaacaaactgaagt 86

                                                                       
Query: 421 cattgggaagtggttgcaatgacgagttacgaaatccaccttggatggaggggtaagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  cattgggaagtggttgcaatgacgagttacgaaatccaccttggatggaggggtaagaaa 26

                                    
Query: 481 ataggttagaaacaaggaagaaaag 505
           |||||||||||||||||||||||||
Sbjct: 25  ataggttagaaacaaggaagaaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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