Name Type Link Xref Definition Chrm. Start (b.p.) End (b.p.) Orient to Chrm. Map View
Sequence Manipulation
1
source
taxon:10090
chromosome : 10
mol_type : genomic DNA
organism : Mus musculus
strain : C57BL/6J
10
1
129,993,255
plus
2
gap
estimated_length : 3000000
10
1
3,000,000
plus
3
gap
estimated_length : 50000
10
7,246,543
7,296,542
plus
4
gap
estimated_length : 86000
10
57,582,614
57,668,613
plus
5
Cnksr3
gene
vega ensembl MGI
GeneID:215748
MGI:2674130
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
10
3,134,304
3,227,479
plus
6
Cnksr3
mRNA
vega ensembl MGI NCBI
GI:141802317
GeneID:215748
MGI:2674130
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product : Cnksr family member 3
transcript_id : NM_172546.2
10
3,134,304
3,227,479
plus
7
Cnksr3
CDS
vega ensembl MGI NCBI
GI:27369772
CCDS:CCDS23670.1
GeneID:215748
MGI:2674130
GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process : GO:0009966 - regulation of signal transduction [Evidence IEA]
codon_start : 1
note : membrane associated guanylate kinase interacting protein-like 1; maguin-like protein
product : Cnksr family member 3
protein_id : NP_766134.1
10
3,134,858
3,226,253
plus
8
Oprm1
gene
vega ensembl MGI
GeneID:18390
MGI:97441
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
10
3,308,332
3,557,942
minus
9
Oprm1
mRNA
vega ensembl MGI NCBI
GI:89001113
GeneID:18390
MGI:97441
exception : mismatches in transcription
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product : opioid receptor, mu 1
transcript_id : NM_001039652.1
10
3,308,332
3,557,942
minus
10
Oprm1
CDS
vega ensembl MGI NCBI
GI:89001114
GeneID:18390
MGI:97441
GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA]
GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004988 - mu-opioid receptor activity [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process : GO:0007610 - behavior [Evidence IMP]; GO:0007191 - dopamine receptor, adenylate cyclase activating pathway [Evidence IDA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007193 - G-protein signaling, adenylate cyclase inhibiting pathway [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start : 1
note : mu opioid receptor mMOR-1R1; mu opiod receptor 1 splice variant Eiii; mu opiod receptor 1 splice variant Eiv
product : opioid receptor, mu 1
protein_id : NP_001034741.1
10
3,309,380
3,557,666
minus
11
A130090K04Rik
gene
vega ensembl MGI
GeneID:320495
MGI:2444159
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
10
3,323,356
3,434,998
plus
12
A130090K04Rik
mRNA
vega ensembl MGI NCBI
GI:85701886
GeneID:320495
MGI:2444159
exception : unclassified transcription discrepancy
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product : RIKEN cDNA A130090K04 gene
transcript_id : NM_001033391.1
10
3,323,356
3,434,998
plus
13
A130090K04Rik
CDS
vega ensembl MGI NCBI
GI:85701887
CCDS:CCDS23671.1
GeneID:320495
MGI:2444159
codon_start : 1
product : hypothetical protein LOC320495
protein_id : NP_001028563.1
10
3,349,994
3,434,626
plus
14
LOC237252
gene
vega ensembl
GeneID:237252
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins
pseudo : _no_value
10
3,819,426
3,827,615
plus
15
LOC237252
misc_RNA
vega ensembl NCBI
GI:149260613
GeneID:237252
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins
product : similar to Tripartite motif-containing 59
pseudo : _no_value
transcript_id : XR_032502.1
10
3,819,426
3,827,615
plus
16
LOC100041224
gene
vega ensembl
GeneID:100041224
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
10
3,964,471
3,983,445
minus
17
LOC100041224
mRNA
vega ensembl NCBI
GI:149260614
GeneID:100041224
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
product : similar to ubiquitin-conjugating enzyme E2 UbcH-ben
transcript_id : XM_001476000.1
10
3,964,471
3,983,445
minus
18
LOC100041224
CDS
vega ensembl NCBI
GI:149260615
GeneID:100041224
codon_start : 1
product : similar to ubiquitin-conjugating enzyme E2 UbcH-ben
protein_id : XP_001476050.1
10
3,964,471
3,983,445
minus
19
Rgs17
gene
vega ensembl MGI
GeneID:56533
MGI:1927469
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
10
4,424,183
4,514,266
plus
20
Rgs17
mRNA
vega ensembl MGI NCBI
GI:142388938
GeneID:56533
MGI:1927469
exception : unclassified transcription discrepancy
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product : regulator of G-protein signaling 17
transcript_id : NM_019958.3
10
4,424,183
4,514,266
plus