Name Type Link Xref Definition Chrm. Start (b.p.) End (b.p.) Orient to Chrm. Map View
Sequence Manipulation
1
source
taxon:10090
chromosome : 11
mol_type : genomic DNA
organism : Mus musculus
strain : C57BL/6J
11
1
121,843,856
plus
2
gap
estimated_length : 3000000
11
1
3,000,000
plus
3
gap
estimated_length : 50000
11
34,445,123
34,495,122
plus
4
gap
estimated_length : 50000
11
88,408,926
88,458,925
plus
5
LOC236604
gene
vega ensembl
GeneID:236604
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
pseudo : _no_value
11
3,019,208
3,031,950
plus
6
LOC236604
misc_RNA
vega ensembl NCBI
GI:149261593
GeneID:236604
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product : phosphatidylserine decarboxylase pseudogene
pseudo : _no_value
transcript_id : XR_035646.1
11
3,019,208
3,031,950
plus
7
Sfi1
gene
vega ensembl MGI
GeneID:78887
MGI:1926137
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
11
3,031,853
3,093,466
minus
8
Sfi1
mRNA
vega ensembl MGI NCBI
GI:124358937
GeneID:78887
MGI:1926137
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product : Sfi1 homolog, spindle assembly associated (yeast)
transcript_id : NM_030207.2
11
3,031,853
3,093,466
minus
9
Sfi1
CDS
vega ensembl MGI NCBI
GI:124358938
GeneID:78887
MGI:1926137
codon_start : 1
product : Sfi1 homolog, spindle assembly associated
protein_id : NP_084483.2
11
3,032,030
3,088,966
minus
10
LOC623257
gene
vega ensembl
GeneID:623257
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 8 ESTs, 2 Proteins
pseudo : _no_value
11
3,048,808
3,051,588
minus
11
LOC623257
misc_RNA
vega ensembl NCBI
GI:149261611
GeneID:623257
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 8 ESTs, 2 Proteins
product : similar to eukaryotic translation elongation factor 2
pseudo : _no_value
transcript_id : XR_033045.1
11
3,048,808
3,051,588
minus
12
Eif4enif1
gene
vega ensembl MGI
GeneID:74203
MGI:1921453
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
11
3,102,765
3,144,584
plus
13
Eif4enif1
mRNA
vega ensembl MGI NCBI
GI:12963810
GeneID:74203
MGI:1921453
exception : mismatches in transcription
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product : eukaryotic translation initiation factor 4E nuclear import factor 1
transcript_id : NM_023743.1
11
3,102,765
3,144,584
plus
14
Eif4enif1
CDS
vega ensembl MGI NCBI
GI:12963811
CCDS:CCDS24354.1
GeneID:74203
MGI:1921453
GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]
GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003743 - translation initiation factor activity [Evidence IEA]
GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start : 1
exception : mismatches in translation
product : eukaryotic translation initiation factor 4E nuclear import factor 1
protein_id : NP_076232.1
11
3,103,661
3,144,092
plus
15
Drg1
gene
vega ensembl MGI
GeneID:13494
MGI:1343297
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
11
3,149,925
3,166,389
minus
16
Drg1
mRNA
vega ensembl MGI NCBI
GI:6681224
GeneID:13494
MGI:1343297
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product : developmentally regulated GTP binding protein 1
transcript_id : NM_007879.1
11
3,149,925
3,166,389
minus
17
Drg1
CDS
vega ensembl MGI NCBI
GI:6681225
CCDS:CCDS24355.1
GeneID:13494
MGI:1343297
GO_component : GO:0005622 - intracellular [Evidence IEA]
GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
codon_start : 1
product : developmentally regulated GTP binding protein 1
protein_id : NP_031905.1
11
3,150,269
3,166,313
minus
18
Patz1
gene
vega ensembl MGI
GeneID:56218
MGI:1891832
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
11
3,190,460
3,208,520
plus
19
Patz1
mRNA
vega ensembl MGI NCBI
GI:118130669
GeneID:56218
MGI:1891832
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product : POZ (BTB) and AT hook containing zinc finger 1
transcript_id : NM_019574.2
11
3,190,460
3,208,520
plus
20
Patz1
CDS
vega ensembl MGI NCBI
GI:33469133
CCDS:CCDS24356.1
GeneID:56218
MGI:1891832
GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]
GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0016564 - transcriptional repressor activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process : GO:0016481 - negative regulation of transcription [Evidence ISS]
codon_start : 1
note : transcription factor (MAZ-related) MAZR; POZ-AT hook-zinc finger protein; zinc finger protein 278
product : POZ (BTB) and AT hook containing zinc finger 1
protein_id : NP_062520.1
11
3,190,617
3,208,069
plus