Name Type Link Xref Definition Chrm. Start (b.p.) End (b.p.) Orient to Chrm. Map View
Sequence Manipulation
1
source
taxon:10090
chromosome : 13
mol_type : genomic DNA
organism : Mus musculus
strain : C57BL/6J
13
1
120,284,312
plus
2
gap
estimated_length : 3000000
13
1
3,000,000
plus
3
gap
estimated_length : 131000
13
11,042,342
11,173,341
plus
4
gap
estimated_length : 36000
13
39,806,937
39,842,936
plus
5
gap
estimated_length : 13000
13
54,445,882
54,458,881
plus
6
gap
estimated_length : 654000
13
92,137,352
92,791,351
plus
7
LOC667375
gene
vega ensembl
GeneID:667375
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins
pseudo : _no_value
13
3,007,964
3,009,179
plus
8
LOC667375
misc_RNA
vega ensembl NCBI
GI:149263800
GeneID:667375
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins
product : similar to COX11 homolog, cytochrome c oxidase assembly protein (yeast)
pseudo : _no_value
transcript_id : XR_030658.1
13
3,007,964
3,009,179
plus
9
LOC544917
gene
vega ensembl
GeneID:544917
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs
13
3,085,681
3,122,566
plus
10
LOC544917
mRNA
vega ensembl NCBI
GI:149263801
GeneID:544917
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs
product : similar to spermatogenesis associated glutamate (E)-rich protein 4d
transcript_id : XM_001472351.1
13
3,085,681
3,122,566
plus
11
LOC544917
CDS
vega ensembl NCBI
GI:149263802
GeneID:544917
codon_start : 1
product : hypothetical protein
protein_id : XP_001472401.1
13
3,086,208
3,122,223
plus
12
LOC236294
gene
vega ensembl
GeneID:236294
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 259 ESTs, 19 Proteins
pseudo : _no_value
13
3,137,725
3,139,410
minus
13
LOC236294
misc_RNA
vega ensembl NCBI
GI:149263803
GeneID:236294
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 259 ESTs, 19 Proteins
product : similar to Polypyrimidine tract binding protein 1
pseudo : _no_value
transcript_id : XR_030680.1
13
3,137,725
3,139,410
minus
14
Speer6-ps1
gene
vega ensembl MGI
GeneID:73266
MGI:1920516
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
pseudo : _no_value
13
3,148,721
3,188,924
plus
15
Speer6-ps1
misc_RNA
vega ensembl MGI NCBI
GI:142364245
GeneID:73266
MGI:1920516
exception : mismatches in transcription
note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product : spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1
pseudo : _no_value
transcript_id : NR_001581.2
13
3,148,721
3,188,924
plus
16
LOC674228
gene
vega ensembl
GeneID:674228
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 1299 ESTs, 8 Proteins
pseudo : _no_value
13
3,298,102
3,299,076
plus
17
LOC674228
misc_RNA
vega ensembl NCBI
GI:149263805
GeneID:674228
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 1299 ESTs, 8 Proteins
product : similar to ribosomal protein S4, X-linked
pseudo : _no_value
transcript_id : XR_030696.1
13
3,298,102
3,299,076
plus
18
LOC667411
gene
vega ensembl
GeneID:667411
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 10 Proteins
pseudo : _no_value
13
3,352,175
3,354,607
plus
19
LOC667411
misc_RNA
vega ensembl NCBI
GI:149263804
GeneID:667411
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 10 Proteins
product : similar to ribonucleotide reductase M2 B (TP53 inducible)
pseudo : _no_value
transcript_id : XR_030665.1
13
3,352,175
3,354,607
plus
20
LOC100039182
gene
vega ensembl
GeneID:100039182
note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
13
3,359,035
3,360,637
plus