Index of /pub/Wild10_2020/tsv_files

	Name	Last modified	Size	Description
	Parent Directory		-
	README.txt	2021-06-25 11:09	3.0K
	bfmv1.del.tsv	2021-05-28 15:09	34M
	bfmv1.ins.tsv	2021-05-28 15:09	52M
	bfmv1.snp.tsv	2021-05-28 15:09	164M
	bfmv1.snp2.tsv	2021-05-28 15:09	3.8M
	blg2v1.del.tsv	2021-05-28 15:09	64M
	blg2v1.ins.tsv	2021-05-28 15:09	98M
	blg2v1.snp.tsv	2021-05-28 15:10	393M
	blg2v1.snp2.tsv	2021-05-28 15:09	11M
	chdv1.del.tsv	2021-05-28 15:09	63M
	chdv1.ins.tsv	2021-05-28 15:09	99M
	chdv1.snp.tsv	2021-05-28 15:10	399M
	chdv1.snp2.tsv	2021-05-28 15:10	11M
	hmiv1.del.tsv	2021-05-28 15:10	60M
	hmiv1.ins.tsv	2021-05-28 15:10	100M
	hmiv1.snp.tsv	2021-05-28 15:11	395M
	hmiv1.snp2.tsv	2021-05-28 15:10	10M
	jf1v3.del.tsv	2021-05-28 15:10	59M
	jf1v3.ins.tsv	2021-05-28 15:10	88M
	jf1v3.snp.tsv	2021-05-28 15:11	384M
	jf1v3.snp2.tsv	2021-05-28 15:11	9.9M
	kjrv1.del.tsv	2021-05-28 15:11	63M
	kjrv1.ins.tsv	2021-05-28 15:11	100M
	kjrv1.snp.tsv	2021-05-28 15:12	394M
	kjrv1.snp2.tsv	2021-05-28 15:11	10M
	msmv4.del.tsv	2021-06-25 12:04	64M
	msmv4.ins.tsv	2021-06-25 11:07	135M
	msmv4.snp.tsv	2021-06-25 11:10	388M
	msmv4.snp2.tsv	2021-06-25 11:11	11M
	njlv1.del.tsv	2021-05-28 15:11	60M
	njlv1.ins.tsv	2021-05-28 15:11	91M
	njlv1.snp.tsv	2021-05-28 15:12	382M
	njlv1.snp2.tsv	2021-05-28 15:12	9.9M
	pgn2v1.del.tsv	2021-05-28 15:12	30M
	pgn2v1.ins.tsv	2021-05-28 15:12	47M
	pgn2v1.snp.tsv	2021-05-28 15:12	145M
	pgn2v1.snp2.tsv	2021-05-28 15:12	3.3M
	swnv1.del.tsv	2021-05-28 15:12	62M
	swnv1.ins.tsv	2021-05-28 15:12	94M
	swnv1.snp.tsv	2021-05-28 15:12	395M
	swnv1.snp2.tsv	2021-05-28 15:12	10M

README		

- About SNP list - 

There are two types of SNP list, [*.snp.tsv] and [*.snp2.tsv] (the asterisk [*] is an arbitrary strain name). SNPs located within 10 bp from the Indels were excluded in the [*.snp.tsv] files. SNPs located within 10 bp from the Indels were listed in the [*.snp2.tsv] files. It is recommended to use them as appropriate for the purpose under the user's discretion.


- Description of each column -

For SNP
strain	chromosome	coordinates	ref(mm10)	variation 

For Insertion (ins)
strain chromosome	coordinates (start position)	insert nucleotides	size	single read cover (-) or pair read cover (=)

For Deletion(del)
strain chromosome	coordinates (start position)	coordinates (start position) 	size	single read cover (-) or pair read cover (=)


MD5 (bfmv1.del.tsv) = ff83d7600cd2624d71d13e9912a81993
MD5 (bfmv1.ins.tsv) = 59574f0a205c9a65d0a43628c45330f3
MD5 (bfmv1.snp.tsv) = fd86395574ab494b8c3307221bf31d91
MD5 (bfmv1.snp2.tsv) = 631c1d0fe145941ecc8f15b479370218
MD5 (blg2v1.del.tsv) = 979c3ca82f0e779c79870c92e60b78c4
MD5 (blg2v1.ins.tsv) = 6e4fff4abee3ef851552ae97b28d0236
MD5 (blg2v1.snp.tsv) = 4ce8202eb2ee650f2b47640632be3f38
MD5 (blg2v1.snp2.tsv) = 23db6e294dfdee9764bf75f146a77359
MD5 (chdv1.del.tsv) = 45718510036be1f6efa06db97b8ad8af
MD5 (chdv1.ins.tsv) = 2d0341b3141020445c4badbfd7c2205d
MD5 (chdv1.snp.tsv) = 16701b743a131c1c3b5c58e634d7172c
MD5 (chdv1.snp2.tsv) = fe55cf36474b89aeb45a302e1313cffe
MD5 (hmiv1.del.tsv) = ac0d75285928ba1cfa8b333d4a5c5344
MD5 (hmiv1.ins.tsv) = d316417978cce123a7b8b7f7cc9ee63a
MD5 (hmiv1.snp.tsv) = 935cf2414912e36812bd645a23bb32d5
MD5 (hmiv1.snp2.tsv) = e607908f90a9fa8789fe1bcdf801ca5e
MD5 (jf1v3.del.tsv) = a9864c25dff719182b75239b76d7dd4a
MD5 (jf1v3.ins.tsv) = faf92e651d77feb6298da9ee84c0a4e3
MD5 (jf1v3.snp.tsv) = a5865ca8b1554548f4c0ad24c219e516
MD5 (jf1v3.snp2.tsv) = 503a56a9a7e3352ed84bb239ae034e17
MD5 (kjrv1.del.tsv) = e394df9f8d4525712a23068b23453f65
MD5 (kjrv1.ins.tsv) = b5ad70e560b60c1c5366bce0d5dc1f5d
MD5 (kjrv1.snp.tsv) = f98687c458302d2218ee9f119c46428c
MD5 (kjrv1.snp2.tsv) = 542233902152a5857bbc8cb21540ec62
MD5 (msmv4.del.tsv) = 4930efb1e1954fe0a90bde8937bc7b8d
MD5 (msmv4.ins.tsv) = b9a1ac9f9b38c2038fa909387349928f
MD5 (msmv4.snp.tsv) = 8ca8d974d490a0e313ea75ed7acd2646
MD5 (msmv4.snp2.tsv) = 06257831ed99de61f413e27eb461a11a
MD5 (njlv1.del.tsv) = 808a0db2bda8f4d6c2ed692a8061eca8
MD5 (njlv1.ins.tsv) = aad9dec65e650d68a2fae3ad53231d20
MD5 (njlv1.snp.tsv) = cc36e901f0f0846dfb778113fe9f4d9b
MD5 (njlv1.snp2.tsv) = 45727909b8bba17cdf35ed2689ffdc28
MD5 (pgnv1.del.tsv) = 1aaca4865ec9a704805810158b1d9250
MD5 (pgnv1.ins.tsv) = f79a72c607dec8e9e578cd303533f0ca
MD5 (pgnv1.snp.tsv) = 617fab9b25caf8e11adb62c7ee890bec
MD5 (pgnv1.snp2.tsv) = 5f88da30056b064424796f0cde98d805
MD5 (swnv1.del.tsv) = ec46353fd9917d677adfab2296901e46
MD5 (swnv1.ins.tsv) = e581443be6e29edf58855bc47b45a5f4
MD5 (swnv1.snp.tsv) = ee7486a364d16e64c7a409b45ed7bcaa
MD5 (swnv1.snp2.tsv) = 11e7be0eee818453d4bbfe1995e39890