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Target CDS Information

Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Cross Reference
CCDS CCDS14847.1
EMBL AK014076, AK149543, BC147272, ...show all
Fantom 3110023K06, C730035C17
GO GO:0001657, GO:0004364, GO:0005737, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Gsta3-001
OTTP OTTMUSP00000032414
OTTT OTTMUST00000065121
protein_id AAA37751.1, AAI47273.1, AAI47274.1, ...show all
Reactome R-MMU-1430728, R-MMU-156580, R-MMU-156590, ...show all
RefSeq_mRNA NM_010356.4
RefSeq_peptide NP_034486
UCSC uc007all.2
UniParc UPI00000018D2
Uniprot/SWISSPROT P30115
Vega_transcript Gsta3-001, OTTMUST00000065121
Vega_translation 178819, OTTMUSP00000032414
Definition protein_id:ENSMUSP00000027067
translation:
MAGKPVLHYFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEI
DGMKLVQTKAILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEEKEAS
LAKIKEQTRNRYFPAFEKVLKSHGQDYLVGNRLSRADIALVELLYHVEELDPGVVDNFPL
LKALRSRVSNLPTVKKFLQPGSQRKPFDDAKCVESAKKIFS

Chromosome 1
Length
Position(start - end)
15,189
21,249,772 - 21,264,962
Orient to Chromosome plus
Link Location : (1:21249772-21264962)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Transcript ID ENSMUST00000027067
Reports
substitution
cSNPs2
Insertion19
Deletion30
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num1
synonymous substitutions 21260093 (p.Ile106Ile),
non-synonymous substitutions 21264865 (p.Asn190Thr),
B6 transcript
(ENSMUST00000027067)
MAGKPVLHYFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEI
DGMKLVQTKAILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEEKEAS
LAKIKEQTRNRYFPAFEKVLKSHGQDYLVGNRLSRADIALVELLYHVEELDPGVVDNFPL
LKALRSRVSNLPTVKKFLQPGSQRKPFDDAKCVESAKKIFS*
MSMv4 transcript
MAGKPVLHYFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEI
DGMKLVQTKAILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEEKEAS
LAKIKEQTRNRYFPAFEKVLKSHGQDYLVGNRLSRADIALVELLYHVEELDPGVVDNFPL
LKALRSRVSTLPTVKKFLQPGSQRKPFDDAKCVESAKKIFS*
homology99.55 (222 / 222)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Transcript ID ENSMUST00000027067
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACAGGGCACATGCAAAGGCCTTTTGCGGAGAAGGTAACATCTAGGACAGC
CATGTCAATGTGAAGTTCAAAGATAACATCTCTTTTTAGCATAAGCACATTCCCTCAATA
CTTGTGACATACTAATAATCACTACCTGAAACTCAGCTCGTTGTGGGGTCTGCTTAAATC
CAACATAATTCAAACAGCAGGTCAATGCAGTTGACAAAAATTTGATTGTAATCAAGCCAC
TACTGCTCAATCAGGGCCACAGATCAGACTTGGGAGCTGAACTAAGACCCTGAAGGGATG
CTATCCATCATATTTATAGTATGAAACCGTAAAGAGATGGGATGCTAGGGGGGCTATAGC
ATTGTCTAATCATACTTTGATATAAGGGACTGAGCAAGGAAGTTTCCATTAATCAAGAGT
GGAGTTGATTCCTGAGCCTGGGAAGATGAACTTAGGTTGACCTTGCCAGCAAGTTGGAGA
AGTTGTCCTTGAGATGTCTGCACTCAGACAGCTGTTTCCTTACAACAGAAGCTGGTCAGC
TACTGGGAAGTTCCCAGCTCCCTAGGGCCTGAGACCTTGAATTTAATTTTTTTCTTAGGA
TTAAATGGAGTCTGAAACCAAACTGGTAGTACCTAGAATGAGGTTCTATTGCTTGTTCCC
AACAAGATTATCTGTTCTGTACCTAACCTGGTGGCCCAGTCCACAGAAGTACTCCCTGGT
GTCACCAGAGTTCTCTTTATAACATCTGCCAGCTGAGATTTCCCACTTGCTTTAGCCCAT
CCTCATTGACAGCCGAAGAGTTAACTCTGCTTGGAACAGGTTCTTCCAGCTTGCCATTGG
CATTGAGGAAGAAACATATTAACCAACTCTTTAGCAACTCAGGCATGACATTGCATTTTT
CTTCTAGTCCTTTATCTAAATGTCTAGCCTCTGAACACTGTGGGAGTAGCTTTTCCCTTA
TTGGATTGTCTCCCCTTAACTGGGAAGGGCGTATTCAAATTTAATAAGTA
1 EXON 1 21,240,589 21,240,659 - - 71
GCTTACAAAACAGCAGAAACTCTTGCATATGGTAAAAGCTAGCTTTTTAGAGGGAACAGC
TTTTTAACAAG
INTRON 1 - 2 21,240,660 21,249,750 9,091
GTAAGTACTGAATCAAATCTCTCTC..........CATGGTGTGCTTCATCCCTGTTTAG
2 EXON 2 21,249,751 21,249,858 - 0 108
AAAACCCAAGCAACTGCTGCCATGGCGGGGAAGCCAGTCCTTCATTACTTTGATGGCAGG
GGAAGAATGGAGCCTATCCGGTGGCTCTTGGCTGCAGCTGGTGTGGAG
INTRON 2 - 3 21,249,859 21,257,330 7,472
GTACGTTCTGACATGAGTGGAACCT..........CTTGTTTATTCTTTCTGTTTTCTAG
3 EXON 3 21,257,331 21,257,382 0 1 52
TTTGAAGAAAAATTTCTGAAAACTCGGGATGACCTGGCAAGGTTACGAAGTG
INTRON 3 - 4 21,257,383 21,258,847 1,465
GTAAGAAACAGATGTAAATGTTCCT..........CCTTTCTCTTTGTTTCGTCCAATAG
4 EXON 4 21,258,848 21,258,980 1 2 133
ATGGGAGTCTGATGTTCCAGCAAGTGCCCATGGTAGAGATCGACGGGATGAAACTGGTGC
AGACCAAAGCCATTCTCAACTACATTGCCTCCAAATACAACCTCTATGGGAAGGACATGA
AGGAGAGAGCCAT
INTRON 4 - 5 21,258,981 21,260,047 1,067
GTATGGTAGACTTTCTCTGGAAAAG..........GGCCGAATGCTTGTCTGTCTTTCAG
5 EXON 5 21,260,048 21,260,189 2 0 142
CATTGACATGTACACAGAAGGAGTGGCGGATCTGGAGATAATGATACTCTATTACCCCCA
CATGCCCCCTGAGGAGAAAGAGGCAAGCCTTGCCAAGATCAAGGAACAAACCAGGAACCG
TTACTTCCCTGCCTTTGAAAAG
INTRON 5 - 6 21,260,190 21,262,792 2,603
GTGAGTGGAAGCTGACAGAACTTCC..........CTAACTAACAACTTGAATTCCTCAG
6 EXON 6 21,262,793 21,262,924 0 0 132
GTGTTGAAGAGCCATGGACAAGATTATCTCGTTGGCAACAGGCTGAGCAGGGCTGATATT
GCCCTGGTTGAACTCCTCTACCATGTGGAAGAGCTGGACCCGGGCGTTGTGGACAACTTC
CCTCTCCTGAAA
INTRON 6 - 7 21,262,925 21,264,842 1,918
GTACTCTACATATCTTACCTCATGG..........TGAGGCTCTGCTTTGTCTGTTGCAG
7 EXON 7 21,264,843 21,265,661 0 - 819
GCGCTGAGAAGCAGAGTCAGCACCCTCCCCACAGTGAAGAAGTTTCTTCAACCTGGCAGC
CAGAGGAAGCCTTTTGATGACGCAAAATGTGTTGAGTCAGCAAAGAAGATTTTCAGTTAA
TTCAGGCAACTATGGATACATAGCCCCCACAAAGCCAACCTTCTAAAATTTTGCATCACA
TTGAAGTGTTTTGACTAAGTGTTGACCCTACTTAGAAAGCTAACAAGTTTTCTAAGGCAT
CTGTGTTAATTCAGGTAGACATGACTGACGAGGAACGGCCGGACGCTCTCTAGTTGTAGT
TAAAATTGAAATCATGATCACTTCCTCGGATATTTTCTTACTGTTCAATAAAACAAAACA
AGCTTCTTAGACACTGGAGTATTCGAACATTGTCATTCAATAGCTGTCATATCCTTGTCA
AACGGAGAAATCTTCCTGTCAAATTCTGGTTGATGCAAAAATAATCTTTCCTTATGGAGA
GTGCCCTTCCTGACCAAATACACACAGATGTGTGCACACTCAAACTGTGAGGAACTCTTT
TCCTTTAACTTAGTAATGGTTTTCTTATTCAGTTATACAAACAATACATTTATGTTCAAT
ATAGAGCAATTGTTTTCCCTGGGGCTGCATGAATGATGGATACAGCAGGGACAATCAAAT
TACCCAGCCACAGAATCTTGAATTTCTGTAATAAAAGTATTAAAAACTTAGGTATTCCTA
ATACAGAACTGGACATTCTGTGTGTCCCATTCCTAAGGTTTCTATAACAATGTACCACAA
ACTTTGTATCTTAAAATAATATAAACTTATTCTTGCTCA
3' upstream sequence
GTTCTGGGGGAGGTGTCTGACGTCTAAGTCTGCGATCCACTAGGTTCTCTCAGAAGGCTT
TAATAACGAATCTTTCTTAGCTTGGTGGCCAGTAACGCTGAAATACCTTGGCTTGCTGAT
ATAATACTCAAATCTTTACATCTGTAGAGATCGTTCTTCCAGAAGACAGTATCAGGAGTT
CCAGGTGGAACAGATGGAACACTCTCTAGGACAGAATTTATCCCGAAGTCTTATGGATCA
GCATACCTAGAGATACACCTGCTAGACTCTGAATGTAAGAAACAGTAGTTCCTTTTTTTT
TCTACTATGACAAAAAACACATGAGAAAACTTTCTTGTTGTAGGTAATATTTAATCTCAA
TGGGTGTTTCCCATTTGATCATTCAGTCCCCAGATAAAAGATACACAACTTACACAACTT
TTATATTTATGATAAGCCTTAGTCAACACAAGACCTGGGCAGATATCTACCCTCTAAGCA
ATTAGTTTATACCTCCCTATCAAGAACCCTGAGTTATGACTTGCTATTTTCTGCATGGGC
CACTCTTACTCTGACTGGTCAGCTCATATGTCCAGTTTTTTTTTACTATCCCTCACCTCA
TGGTGTCTTCCTCCCTCTCTTTCCTCTTTCTTTTCCTCGTGGTCTCCTGCCCCCAAACCC
AAGCCCTGGAACCAAAGGACCCACCTATCTCTCTTCTGCCCAGCTATAGGCTGTACGCAA
CTTTATTCACCAATCAGGGATAACTTGGGGGGCAAGGTTACATATAGTCACTTGGGTCTA
TGCGAGGGTTCTTTCATCCCTGGGAGCAACCAGGTTTTGACCAGTATTTAGCATTACAAT
ACATAGCAATGAAGGTTTTATTTCGGTTTATACTTTGAAGGTAGAGTCCATAGCAACTTT
CCGGGGGCCAACACATTCAGTTGTAACCCATAGTAAATCACTATGCATTATAACGGAGCC
CTGGGCCAAAATTAAGTGTTTGTCAGTGACATTTTGGTGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Transcript ID ENSMUST00000027067
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 222 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information