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Target CDS Information

Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Cross Reference
CCDS CCDS14847.1
EMBL AK014076, AK149543, BC147272, ...show all
Fantom 3110023K06, C730035C17
GO GO:0001657, GO:0004364, GO:0005737, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Gsta3-001
OTTP OTTMUSP00000032414
OTTT OTTMUST00000065121
protein_id AAA37751.1, AAI47273.1, AAI47274.1, ...show all
Reactome R-MMU-1430728, R-MMU-156580, R-MMU-156590, ...show all
RefSeq_mRNA NM_010356.4
RefSeq_peptide NP_034486
UCSC uc007all.2
UniParc UPI00000018D2
Uniprot/SWISSPROT P30115
Vega_transcript Gsta3-001, OTTMUST00000065121
Vega_translation 178819, OTTMUSP00000032414
Definition protein_id:ENSMUSP00000027067
translation:
MAGKPVLHYFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEI
DGMKLVQTKAILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEEKEAS
LAKIKEQTRNRYFPAFEKVLKSHGQDYLVGNRLSRADIALVELLYHVEELDPGVVDNFPL
LKALRSRVSNLPTVKKFLQPGSQRKPFDDAKCVESAKKIFS

Chromosome 1
Length
Position(start - end)
15189
21249772 - 21264962
Orient to Chromosome plus
Link Location : (1:21249772-21264962)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Transcript ID ENSMUST00000027067
Reports
substitution
cSNPs2
Insertion19
Deletion30
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num1
synonymous substitutions 21260093 (p.Ile106Ile),
non-synonymous substitutions 21264865 (p.Asn190Thr),
B6 transcript
(ENSMUST00000027067)
MAGKPVLHYFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEI
DGMKLVQTKAILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEEKEAS
LAKIKEQTRNRYFPAFEKVLKSHGQDYLVGNRLSRADIALVELLYHVEELDPGVVDNFPL
LKALRSRVSNLPTVKKFLQPGSQRKPFDDAKCVESAKKIFS*
MSMv4 transcript
MAGKPVLHYFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEI
DGMKLVQTKAILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEEKEAS
LAKIKEQTRNRYFPAFEKVLKSHGQDYLVGNRLSRADIALVELLYHVEELDPGVVDNFPL
LKALRSRVSTLPTVKKFLQPGSQRKPFDDAKCVESAKKIFS*
homology99.55 (222 / 222)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Transcript ID ENSMUST00000027067
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACAGGGCACATGCAAAGGCCTTTTGCGGAGAAGGTAACATCTAGGACAGC
CATGTCAATGTGAAGTTCAAAGATAACATCTCTTTTTAGCATAAGCACATTCCCTCAATA
CTTGTGACATACTAATAATCACTACCTGAAACTCAGCTCGTTGTGGGGTCTGCTTAAATC
CAACATAATTCAAACAGCAGGTCAATGCAGTTGACAAAAATTTGATTGTAATCAAGCCAC
TACTGCTCAATCAGGGCCACAGATCAGACTTGGGAGCTGAACTAAGACCCTGAAGGGATG
CTATCCATCATATTTATAGTATGAAACCGTAAAGAGATGGGATGCTAGGGGGGCTATAGC
ATTGTCTAATCATACTTTGATATAAGGGACTGAGCAAGGAAGTTTCCATTAATCAAGAGT
GGAGTTGATTCCTGAGCCTGGGAAGATGAACTTAGGTTGACCTTGCCAGCAAGTTGGAGA
AGTTGTCCTTGAGATGTCTGCACTCAGACAGCTGTTTCCTTACAACAGAAGCTGGTCAGC
TACTGGGAAGTTCCCAGCTCCCTAGGGCCTGAGACCTTGAATTTAATTTTTTTCTTAGGA
TTAAATGGAGTCTGAAACCAAACTGGTAGTACCTAGAATGAGGTTCTATTGCTTGTTCCC
AACAAGATTATCTGTTCTGTACCTAACCTGGTGGCCCAGTCCACAGAAGTACTCCCTGGT
GTCACCAGAGTTCTCTTTATAACATCTGCCAGCTGAGATTTCCCACTTGCTTTAGCCCAT
CCTCATTGACAGCCGAAGAGTTAACTCTGCTTGGAACAGGTTCTTCCAGCTTGCCATTGG
CATTGAGGAAGAAACATATTAACCAACTCTTTAGCAACTCAGGCATGACATTGCATTTTT
CTTCTAGTCCTTTATCTAAATGTCTAGCCTCTGAACACTGTGGGAGTAGCTTTTCCCTTA
TTGGATTGTCTCCCCTTAACTGGGAAGGGCGTATTCAAATTTAATAAGTA
1 EXON 1 21240589 21240659 - - 71
GCTTACAAAACAGCAGAAACTCTTGCATATGGTAAAAGCTAGCTTTTTAGAGGGAACAGC
TTTTTAACAAG
INTRON 1 - 2 21240660 21249750 9091
GTAAGTACTGAATCAAATCTCTCTC..........CATGGTGTGCTTCATCCCTGTTTAG
2 EXON 2 21249751 21249858 - 0 108
AAAACCCAAGCAACTGCTGCCATGGCGGGGAAGCCAGTCCTTCATTACTTTGATGGCAGG
GGAAGAATGGAGCCTATCCGGTGGCTCTTGGCTGCAGCTGGTGTGGAG
INTRON 2 - 3 21249859 21257330 7472
GTACGTTCTGACATGAGTGGAACCT..........CTTGTTTATTCTTTCTGTTTTCTAG
3 EXON 3 21257331 21257382 0 1 52
TTTGAAGAAAAATTTCTGAAAACTCGGGATGACCTGGCAAGGTTACGAAGTG
INTRON 3 - 4 21257383 21258847 1465
GTAAGAAACAGATGTAAATGTTCCT..........CCTTTCTCTTTGTTTCGTCCAATAG
4 EXON 4 21258848 21258980 1 2 133
ATGGGAGTCTGATGTTCCAGCAAGTGCCCATGGTAGAGATCGACGGGATGAAACTGGTGC
AGACCAAAGCCATTCTCAACTACATTGCCTCCAAATACAACCTCTATGGGAAGGACATGA
AGGAGAGAGCCAT
INTRON 4 - 5 21258981 21260047 1067
GTATGGTAGACTTTCTCTGGAAAAG..........GGCCGAATGCTTGTCTGTCTTTCAG
5 EXON 5 21260048 21260189 2 0 142
CATTGACATGTACACAGAAGGAGTGGCGGATCTGGAGATAATGATACTCTATTACCCCCA
CATGCCCCCTGAGGAGAAAGAGGCAAGCCTTGCCAAGATCAAGGAACAAACCAGGAACCG
TTACTTCCCTGCCTTTGAAAAG
INTRON 5 - 6 21260190 21262792 2603
GTGAGTGGAAGCTGACAGAACTTCC..........CTAACTAACAACTTGAATTCCTCAG
6 EXON 6 21262793 21262924 0 0 132
GTGTTGAAGAGCCATGGACAAGATTATCTCGTTGGCAACAGGCTGAGCAGGGCTGATATT
GCCCTGGTTGAACTCCTCTACCATGTGGAAGAGCTGGACCCGGGCGTTGTGGACAACTTC
CCTCTCCTGAAA
INTRON 6 - 7 21262925 21264842 1918
GTACTCTACATATCTTACCTCATGG..........TGAGGCTCTGCTTTGTCTGTTGCAG
7 EXON 7 21264843 21265661 0 - 819
GCGCTGAGAAGCAGAGTCAGCACCCTCCCCACAGTGAAGAAGTTTCTTCAACCTGGCAGC
CAGAGGAAGCCTTTTGATGACGCAAAATGTGTTGAGTCAGCAAAGAAGATTTTCAGTTAA
TTCAGGCAACTATGGATACATAGCCCCCACAAAGCCAACCTTCTAAAATTTTGCATCACA
TTGAAGTGTTTTGACTAAGTGTTGACCCTACTTAGAAAGCTAACAAGTTTTCTAAGGCAT
CTGTGTTAATTCAGGTAGACATGACTGACGAGGAACGGCCGGACGCTCTCTAGTTGTAGT
TAAAATTGAAATCATGATCACTTCCTCGGATATTTTCTTACTGTTCAATAAAACAAAACA
AGCTTCTTAGACACTGGAGTATTCGAACATTGTCATTCAATAGCTGTCATATCCTTGTCA
AACGGAGAAATCTTCCTGTCAAATTCTGGTTGATGCAAAAATAATCTTTCCTTATGGAGA
GTGCCCTTCCTGACCAAATACACACAGATGTGTGCACACTCAAACTGTGAGGAACTCTTT
TCCTTTAACTTAGTAATGGTTTTCTTATTCAGTTATACAAACAATACATTTATGTTCAAT
ATAGAGCAATTGTTTTCCCTGGGGCTGCATGAATGATGGATACAGCAGGGACAATCAAAT
TACCCAGCCACAGAATCTTGAATTTCTGTAATAAAAGTATTAAAAACTTAGGTATTCCTA
ATACAGAACTGGACATTCTGTGTGTCCCATTCCTAAGGTTTCTATAACAATGTACCACAA
ACTTTGTATCTTAAAATAATATAAACTTATTCTTGCTCA
3' upstream sequence
GTTCTGGGGGAGGTGTCTGACGTCTAAGTCTGCGATCCACTAGGTTCTCTCAGAAGGCTT
TAATAACGAATCTTTCTTAGCTTGGTGGCCAGTAACGCTGAAATACCTTGGCTTGCTGAT
ATAATACTCAAATCTTTACATCTGTAGAGATCGTTCTTCCAGAAGACAGTATCAGGAGTT
CCAGGTGGAACAGATGGAACACTCTCTAGGACAGAATTTATCCCGAAGTCTTATGGATCA
GCATACCTAGAGATACACCTGCTAGACTCTGAATGTAAGAAACAGTAGTTCCTTTTTTTT
TCTACTATGACAAAAAACACATGAGAAAACTTTCTTGTTGTAGGTAATATTTAATCTCAA
TGGGTGTTTCCCATTTGATCATTCAGTCCCCAGATAAAAGATACACAACTTACACAACTT
TTATATTTATGATAAGCCTTAGTCAACACAAGACCTGGGCAGATATCTACCCTCTAAGCA
ATTAGTTTATACCTCCCTATCAAGAACCCTGAGTTATGACTTGCTATTTTCTGCATGGGC
CACTCTTACTCTGACTGGTCAGCTCATATGTCCAGTTTTTTTTTACTATCCCTCACCTCA
TGGTGTCTTCCTCCCTCTCTTTCCTCTTTCTTTTCCTCGTGGTCTCCTGCCCCCAAACCC
AAGCCCTGGAACCAAAGGACCCACCTATCTCTCTTCTGCCCAGCTATAGGCTGTACGCAA
CTTTATTCACCAATCAGGGATAACTTGGGGGGCAAGGTTACATATAGTCACTTGGGTCTA
TGCGAGGGTTCTTTCATCCCTGGGAGCAACCAGGTTTTGACCAGTATTTAGCATTACAAT
ACATAGCAATGAAGGTTTTATTTCGGTTTATACTTTGAAGGTAGAGTCCATAGCAACTTT
CCGGGGGCCAACACATTCAGTTGTAACCCATAGTAAATCACTATGCATTATAACGGAGCC
CTGGGCCAAAATTAAGTGTTTGTCAGTGACATTTTGGTGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Transcript ID ENSMUST00000027067
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 222 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information