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Target CDS Information

Gene Symbol (Gene ID) Lrrc28 (ENSMUSG00000030556)
Cross Reference
CCDS CCDS52269.1
EMBL AC120124, AK008713, CH466543
Fantom 2210012C09
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Lrrc28-002
OTTP OTTMUSP00000066147
OTTT OTTMUST00000118508
protein_id BAB25849.1, EDL07190.1
RefSeq_mRNA NM_027413.1
RefSeq_peptide NP_081689
UCSC uc009hiq.2
UniParc UPI0000023527
Uniprot/SPTREMBL Q9D7Y1
Vega_transcript Lrrc28-002, OTTMUST00000118508
Vega_translation 201508, OTTMUSP00000066147
Definition protein_id:ENSMUSP00000032775
translation:
MASEICKTISVARLEKHKNLFLNYRNLHHFPLELLKDEGLQHLERLYMKRNSLTTLPENL
AQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGGLRALRHLRLAN
NQLQFLPPDFGSETLSTFLTHEDDMATSVPLHVV

Chromosome 7
Length
Position(start - end)
45618
67595652 - 67641271
Orient to Chromosome minus
Link Location : (7:67595652-67641271)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lrrc28 (ENSMUSG00000030556)
Transcript ID ENSMUST00000032775
Reports
substitution
cSNPs1
Insertion37
Deletion41
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 67618114 (p.Val88Val),
non-synonymous substitutions
B6 transcript
(ENSMUST00000032775)
MASEICKTISVARLEKHKNLFLNYRNLHHFPLELLKDEGLQHLERLYMKRNSLTTLPENL
AQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGGLRALRHLRLAN
NQLQFLPPDFGSETLSTFLTHEDDMATSVPLHVV*
MSMv4 transcript
MASEICKTISVARLEKHKNLFLNYRNLHHFPLELLKDEGLQHLERLYMKRNSLTTLPENL
AQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGGLRALRHLRLAN
NQLQFLPPDFGSETLSTFLTHEDDMATSVPLHVV*
homology100.00 (155 / 155)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lrrc28 (ENSMUSG00000030556)
Transcript ID ENSMUST00000032775
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTGCACTGCATTTAAAAAAATGTTCACTTTTCTTCCCTGGTACTGGGGCT
TGACCTGAGTGCCTCTACTGAGCTACGCACCTGCACCCTTTTTTTTTGAAATACTTGTGA
TTGGTTTCACCTACAGCCTCAGCCTTAGAGTAGCAGAGGCTTGCTGCATCAGAACAATCG
GGTTTTTAGTCTTAAGGTATTCATCGACCGTCTACTTAGCCATACAGGAACTGCCAGGTT
ATTTCACCAAATTGTGATTGTCCTCAGTTATTTCTCACACTAGGGCCTGTTTCTTTTTAA
ATTTTTATTTACGAGGCAGTGCCTTCACGTAGCTGAGGCTGGCCTTTACTCCTGTCTCCA
CTTTCAGATCACTGGGATTCAGGCGTGCAGCACCATGCCTGCGCCACGCTTGTCTAAAGG
TAGACACCACCTTCGGCAGCGATCAGTGAGCGTTCGGAGACATTAAATCCGATGCTTAAG
TTCTGCTTGTTGACTCCATTGACTTGCGTTACCTAAGCCCGACGGCTTCTGTTTAAGTCA
GACTGGCGGTGGAACAGTAGCCGGAATGGCTGATCGAACAGATGCAAGGCTACACAGGGC
GATGCCAGGGATTTAATCGCTCGACGTCGAGTTTGACTGTTGACAGCGGAATGAATGTGT
GAATAAAAGAACTGACTGGAGACGCTGAGGCTGGCGCCATCTAAACAACCCACCTAAACG
CTAACGCAGTACACCCACTTTCTGAACACCCAGCTCCAAGCCGGAGCCGGAAGCCAGGAC
GCTAGAGGAAGTCGCGCTCTCAGCCAATAAGCGTCAGGTTCTGAAAATGACTCTCTCATC
CCGCCTATTGTAGGACAGCGAGAACTGAGGCGAACTATCGCGAGGTTTCGTTGCCCTGGC
CCCCTTCTTCCCCGAACCCTACTCCAGTTAGCCAGGCCCGCCTCTCCGCAGGCTCCGCCC
CGTAGCCCCGCCCTCCCTGTGTTTTTAGACTGCCTACCAGCGCAGCCTGA
1 EXON 1 67645178 67645207 - - 30
GCCGCTGAGTGCCGGTCAGCGGTCGCCGAG
INTRON 1 - 2 67641341 67645177 3837
GTGAGTGTCCGGTCTCCAGGCTCAC..........ACTTTTTTTTTTGTCCTCTTTGTAG
2 EXON 2 67641104 67641340 - 0 237
AATTGGACCAAATGGACCAGTTTTGACAAGATGTAGTGCGACAGCACTTCCGTTTGGACA
TGTTCAGACATGGCATCCGAAATCTGTAAGACGATCTCTGTGGCCAGGCTTGAAAAGCAC
AAGAATTTGTTCTTAAATTACAGGAATCTGCACCATTTTCCACTGGAGTTGCTGAAGGAT
GAGGGGCTGCAGCACCTGGAGAGGCTCTATATGAAAAGGAACTCCCTCACAACCTTG
INTRON 2 - 3 67628336 67641103 12768
GTAGGTATTAGAGGGCATTAATACC..........TTAATTCTGAGTTTTTTATTTTCAG
3 EXON 3 67628295 67628335 0 2 41
CCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACT
INTRON 3 - 4 67619112 67628294 9183
GTGAGTGTGTTTATTCATTTTTTTT..........CAACTTTCCCCTCCTTTTGTCACAG
4 EXON 4 67619074 67619111 2 1 38
GTACCTTCACTCAAATAACATAGTTGTGGTTCCAGAAG
INTRON 4 - 5 67618131 67619073 943
GTAAGCATACTTATAATTCTTAGTT..........TTCTCCCTTCCTTTTCTCCCTGAAG
5 EXON 5 67617993 67618130 1 1 138
CCATCGGGTCCCTCGTAAAACTCCAGTGTCTGGATCTCAGTGACAATGCCTTAGAGATCG
TTTGCCCAGAAATCGGTGGTCTGAGAGCGTTGCGTCATCTTCGATTAGCTAATAACCAGC
TACAGTTCCTACCTCCAG
INTRON 5 - 6 67595732 67617992 22261
GTAACCCTGACTGTATAGTTTCTGT..........ATTTTAGTTTCTTTGTTTATTTTAG
6 EXON 6 67594399 67595731 1 - 1333
ACTTTGGTTCTGAAACACTGTCTACGTTCTTGACACATGAAGATGACATGGCCACTTCAG
TGCCTCTGCATGTTGTGTAAAAAACCTTAAAAGCGAAGAAGGACAAGGAGATGCCCTAAT
AAGACACATACACTGTACAAACAAAACCTAAATTATATATAAATACACCCCACCCAGCAT
GCCTTTCTTCTCCCACTACCTGCCCAAAGCAATGCCAAAGGCCCGTCTCTCTCAGACCAA
TGCAGCGTATGAAACACCAGCCATCCCTAACCTTGCAGATACATTAATAATCTGCAGCCT
GTTGGTGGTTCTGCAAGTGTGGGGAAGCAGTTTCCCTGGAGGCATGGTCACTGTTGGCTG
AGATCCTGGGACTGGATCTTTCAGATGGTCTAGCTGGATCCCACCGTATCCACCAGGGAG
GCAGCACTGTCTACTCAGAAGCTCCAAAGGCATTGCTCAGGGATACTGGGCAGGGTCTCA
GAAGACAAAGCATACAATGAGCTAACAGCCTAGGTTGATATGAATTATTTCTCAGTAAGT
AATTTGGGACAACTTGCTTCTGCTTTACACTGCATTCTGGAACCATTTTCATAGCATACT
ATTAAAAACTGATATATAGTTATTTTAAAAGCTGTCTATGCAATCACCTCTTAAATGCTT
TCCATTAATTTAATAACTTAATGAGCTATTATGTAATTCTAAGAGGTAGTTAGCCTTAAG
GAAGCCAATGCTGTGCCAATTCACAGGAAGGAGAAAAAGCGATGCAAACAAAAGTTCACA
TCCTCGACAAGAACTTTAGTTTTATCGAAGTGTTGCAAAAATGTCCCCAAAAGCATTTAT
AGCAATATATGTTAAGAAGCCAAAGTTGAGGGGTAAGGAGAATACACTCAAATTCTTTAA
GGTAAAAATCCACTTATTTTATGCTTGTAATACATAAATTTCCCCTCAGACCTAAGTTCA
TAATTTGTAGACATTGCTCATTCTGATAAATTAATACATATACTAAATATAGATAAATTA
ATCAAGAATGCTTAAAAACCCAAGTTAACAAGACAAAAACAAAAAAACAAAACAACCCCC
AAAAAACCATAAGAACCAAACCTTGCACAATCTCCATTCTGTGTAAATACCCTGACTAAA
ATGTCAGTTGTGCTACGTAATTCCATGTCAGTGCAGAAATGCATTGATTTGATATATCCT
TGTTGGTTTTAAGGTCTTTAGCACGTTTGTTTCTAAGTATCACCTTGCTTTGAAATGATG
AGTAATTGCTACCAAATCACAAATCATCACAAATCCATTTTAGTCTAGTCTGAATAAAAT
CCAGCATAAATGT
3' upstream sequence
ATTATTTTGTTCTGGGCACAATGGCTCCGTGTCTTTCTTGCGAGCTTTCTTCTTCTGGAA
AAACCACAGTTTAAGTCATTCTGGACTTACTTCAGAGAAAGAGACAGTGAAGTCTATATT
TGTTGTTGTTGTTATTTTCTTTTTAAGTCTCCAGATCTGGCTAAGACACTTCTTTTCAGA
CATGTAGTTGTGGCACCTGATCGATCATATTTGAAATAGAAGTGCTTTAAACATCAGCCA
AGTTTGGTGTTCTGGAGGTTTCCACTGATCTTTATGGTGTCAATTGCAGATAATGTTTGA
ACACGATGATAAGAATCAAAAAGTTGGTGTCTATCCACAAACACCCTGGAACGTGGGTGC
TTGCAAAGAATCTCCACCCTGAACGGCTGGTCTGGAATGAATGGAAAGTAAGGGGTTGCC
GAGCACTCTTTGCCTCATTCTCCTGAGATGCAAGAGTTTCTGTGAACACAGCTTTGAGTT
CAATCGCCACATCAGCAGGAGGCTCTTCAGAATCACCACACGTCAATCTGATGGCAAAGC
TTTCTGGGTTGAGATCTACCATGCCCATCACTAATACCTTCTTGCCTGGTCTCATGCTAC
CTTTAATGTGCCCTCAAAATGTAGCTATCAGTTAAGGGAAGTACACGTCCGTCGGCTTGA
ACTGGAGAACCCAGAAAGTTAAGTGCCCATCATCAAGTTTCACCACAGCATCGCTGTCAG
CTACCGACCCTGCCACATTCCTGTAGCGCCTGGGATGTGGCGGCCCTCGCGTGCACACTC
TAGGCTGGTGCGGCCCGCAGGCCCAGGAGGGGAAGGGGAGGCAGGCAGCCCTCGAGAAGG
TCTCAGTGGCAAGGGGATGACAGTGGCAAGGGTGGTAGTCAAATTCTATGTGCTTTAGGG
TCAATAAAATTCCTCATCCAAAAGAGTAAATAATACTAGTAACCATCATGGTTTTTTTAA
ATTGCTAACTTATTTGTTGATGTATTGATTTTGGAGGGGA..........

Sequence Detail Report

Gene Symbol (Gene ID) Lrrc28 (ENSMUSG00000030556)
Transcript ID ENSMUST00000032775
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 155 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information