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Target CDS Information

Gene Symbol (Gene ID) Lrrc28 (ENSMUSG00000030556)
Cross Reference
EMBL AC120124, AK004904, CH466543
Fantom 1300004K21
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Lrrc28-005
OTTP OTTMUSP00000066150
OTTT OTTMUST00000118513
protein_id BAC25101.1, EDL07188.1
UCSC uc009hin.2
UniParc UPI00000EA14E
Uniprot/SPTREMBL Q8C1S3
Vega_transcript Lrrc28-005, OTTMUST00000118513
Vega_translation 201506, OTTMUSP00000066150
Definition protein_id:ENSMUSP00000140382
translation:
MASEICKTISVARLEKHKNLFLNYRNLHHFPLELLKDEGLQHLERLYMKRNSLTTLPENL
AQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGGLRALRHLRLAN
NQLQFLPPVPHCGPQSAMLCAAPSLPAAQPQ

Chromosome 7
Length
Position(start - end)
81371
67559899 - 67641271
Orient to Chromosome minus
Link Location : (7:67559899-67641271)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lrrc28 (ENSMUSG00000030556)
Transcript ID ENSMUST00000191035
Reports
substitution
cSNPs1
Insertion89
Deletion93
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 67618114 (p.Val88Val),
non-synonymous substitutions
B6 transcript
(ENSMUST00000191035)
MASEICKTISVARLEKHKNLFLNYRNLHHFPLELLKDEGLQHLERLYMKRNSLTTLPENL
AQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGGLRALRHLRLAN
NQLQFLPPVPHCGPQSAMLCAAPSLPAAQPQ*
MSMv4 transcript
MASEICKTISVARLEKHKNLFLNYRNLHHFPLELLKDEGLQHLERLYMKRNSLTTLPENL
AQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGGLRALRHLRLAN
NQLQFLPPVPHCGPQSAMLCAAPSLPAAQPQ*
homology100.00 (152 / 152)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lrrc28 (ENSMUSG00000030556)
Transcript ID ENSMUST00000191035
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTTGTCCATCTATGCCTAGGAAGATGTCAGATGTAGCTTCGTTGTCAATT
TAACCAACATATTAACTGCTATGTTACATGAGTTACCTGAGGCCCAAAGATTTATAATGG
AATCATAGAGGGTTCCTGTTCCCAGTGCAGTATTTTGGACTGGTGACTTTTGACCACTTT
CTTTGCTATTTCTGATTATCTGCAAAGCTGTAAAGAAAAGACTAAAAAAGATAAAAGAAA
TGAAAATGTGGAATATTTGACAATATTTAGATAGTAGGAAGTAAGGGAATTGAGCTGCTA
GTGACATAAGTGGAAAAATATATGTTTGAATGTTCGAGGTAAGTAAAATACAAAATGAAG
CAGCTCAAGATGAAAATGGGGCCTGCTGTATTTTTTAACACCTCTTTCTTTGGTCATGCT
GTGCAATTTGTCTCTGGGCTCTGGGGATGCGGAGCAGATGTTAGAGTGCTTTCTGAGCAT
GCTCTGAGCCTTGGGTTTGATCTCAGTGCTGCAGAAACAAAGAGGTGTGACTTACAACTG
GAATCCTAGCACTCTTGGAGGCAGAGACAGGATCAGGAGTTTAGAGCCTTCCTTGGCTCC
ATAGCAAGTTCTAGGCTACCCTTGGGTACATGAGAAACCTGTCTTTAAAAACACAAAGCC
AGAAATTGATCTCTGTTCGAATAAAGAGTCCTATGTTAAATCCAAAAGAGTTTTTACCCA
GTAAGGTCTATTTCTAGTAAGTAGTAAATACTGCTTAATCAGACTTCTCTATTATTTTAA
TGTCCTAAATATGTGCATAAATTTTAGTCGTCACAAAAGGTGGTAGAAAATACATATATG
TGTATGTGCGTGTATATATATATACATATATATATATACACACACACATATATATATATA
TGTACATACACATGCACACACACACTGTTGTCTCCTAGCTCTGTAGGATTACAGGTTTAC
ATGCACTGCTTGTAAGAAATTCTAATGACTTTTTTTTTTGTCCTCTTTGT
1 EXON 1 67641104 67641342 - 0 239
AGAATTGGACCAAATGGACCAGTTTTGACAAGATGTAGTGCGACAGCACTTCCGTTTGGA
CATGTTCAGACATGGCATCCGAAATCTGTAAGACGATCTCTGTGGCCAGGCTTGAAAAGC
ACAAGAATTTGTTCTTAAATTACAGGAATCTGCACCATTTTCCACTGGAGTTGCTGAAGG
ATGAGGGGCTGCAGCACCTGGAGAGGCTCTATATGAAAAGGAACTCCCTCACAACCTTG
INTRON 1 - 2 67628336 67641103 12768
GTAGGTATTAGAGGGCATTAATACC..........TTAATTCTGAGTTTTTTATTTTCAG
2 EXON 2 67628295 67628335 0 2 41
CCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACT
INTRON 2 - 3 67619112 67628294 9183
GTGAGTGTGTTTATTCATTTTTTTT..........CAACTTTCCCCTCCTTTTGTCACAG
3 EXON 3 67619074 67619111 2 1 38
GTACCTTCACTCAAATAACATAGTTGTGGTTCCAGAAG
INTRON 3 - 4 67618131 67619073 943
GTAAGCATACTTATAATTCTTAGTT..........TTCTCCCTTCCTTTTCTCCCTGAAG
4 EXON 4 67617993 67618130 1 1 138
CCATCGGGTCCCTCGTAAAACTCCAGTGTCTGGATCTCAGTGACAATGCCTTAGAGATCG
TTTGCCCAGAAATCGGTGGTCTGAGAGCGTTGCGTCATCTTCGATTAGCTAATAACCAGC
TACAGTTCCTACCTCCAG
INTRON 4 - 5 67559970 67617992 58023
GTAACCCTGACTGTATAGTTTCTGT..........GCTTCACCTGTGCCTTTCTCTGCAG
5 EXON 5 67559858 67559969 1 - 112
TACCTCACTGTGGACCGCAATCGGCTATGCTGTGTGCCGCGCCATCTCTGCCAGCTGCCC
AGCCTCAATGAGCTCTCCATGGCTGGAAACCATCTTGCATCTTTGCCCATTG
INTRON 5 - 6 67545469 67559857 14389
GTAAGTGTTGTGGTTATATGATGAC..........TAACAGCACCGCTCTCTGTGATCAG
6 EXON 6 67545366 67545468 - - 103
ATTTAGGTCGCTCCCGAGAACTGCAGTACGTGTATGTGGATAACAACATCCAGCTGAAGG
GCCTGCCCTCGTACCTCTACAACAAAGTTATCGGCTGCAACGG
INTRON 6 - 7 67531791 67545365 13575
GTAAGGCTGCCTCCAGTGCGTGCTT..........GCCCCTGTGCTGTGTCTTTATGCAG
7 EXON 7 67531615 67531790 - - 176
CTGTGGCATCCCCATCCAATTGTCAGAGGTGAGGCTGCTGACATTTTCATCTGGGCAGCT
GACGGTCTTCCTCCCAGCAGAGGTGAAGACAATAGGCACAGAGAAGGATCATGTCCTGCC
TCTGCAAGAACTGACCATGCGGAGTCTCTACCGCACCTACCACGGGCTTTGGAAAG
INTRON 7 - 8 67529746 67531614 1869
GTTAGTACATGGGCCTTCCCTGCTG..........GTCTGATTTTTCTCTTCTGTTTCAG
8 EXON 8 67529586 67529745 - - 160
ATCTGAACTTTTTGTCTCCAATCTCATTACCCAGAAGTCTCCTGGAGCTGCTGCACTGCC
CCCTGGGGCACTGTCACCTGTGTAGTGAGCCCATGTTTACCTTCGTCTATCCTAAGATCT
TCCCCTTGAGAGAGACGCCGATGGCAGGCCTGCACCAGAG
3' upstream sequence
GTGATGAAGCCTAAGTGGGCACCAGGGCTTAACTTGGGCCAGCCGTGCAACATGGGAGTG
AGGGGATCATGCACGGAGGGGATGCTGAGTCTGCAGCGTAAGGAAGCTAAATCAGGGGTT
CCCAACCTGTGGAGTTTCAAAGCCTCTTTCACAGGGGTCATCTAAGACCATTGAAAACAC
AATTTATATCCCGATTCATAACAAGAGCACAGTTACAGTTATGAAGTAGAAATGAAATTA
TTTTTATGGGGGGTGGGGGGACATCACCATAACAGGAGGAACTGTATTAAAGGGCTGCAG
CATTAGGAAGGTTGAGAACCACTGGACTAAGTGAAACCTGCTTGTTTTCACTACTGCAAG
AAAGCCTGGCTGCCCTCCTCAGTTCGGCTTTGGGGCAGACACAGGGGGCATGTACAGAGC
ATGCGCACAACTGTGCATGTTGTTTGGAGCAGCTCATTCTTAGGGGAGGGGGCTTGTATA
AGGAGAGCTCATCCCTGTGCTCACCTGGCACAACCGGAAGTGCGAGCCGCACTCCGCACG
TGAGCGCTTGCTGCTGTTCTGAATCCAATGCTTCCAACGGCGTTCCGGCGTTCCCGTACC
ACTCGGTATTCCTTGGCAGAGTGCTTTGCATTCATGGCGAATGTTCACTAAGTCCTGAGC
CATGCTGTTACAGAGAGCAAGAACGCCAGACGGTGAAGAGTGCAGCATTGGAAAAGCCCC
CGTGGGTCTGGCCTTGGCTTAGTTTTCATGTTTGGGTTTTTTTTTTTCCCCCTCCTCCCT
TTGAGACAGAGTCTGAAACTAGCAGTGAGCAGAGGATGGCCTCATCCTCCTGCCTCTGCC
TCCCCAATGCTGGGGTCGCAGACATGCGCCACCACCCCCAACTTAAGTCTGAGTTCCTTA
AAGCTAAGAAAGAAAGAAAAACAGAGTATGCTCTCACTTGCCTGGGGAACTTTCCAAATG
TGGGAGCGTCTCCCTCCTTGTCAGTGCCAGTGTGAGTTCC..........

Sequence Detail Report

Gene Symbol (Gene ID) Lrrc28 (ENSMUSG00000030556)
Transcript ID ENSMUST00000191035
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 152 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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