MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Usb1 (ENSMUSG00000031792)

Cross Reference

CCDS	CCDS22560.1
GO	GO:0000175, GO:0005634, GO:0008380, ...show all
MGI_trans_name	Usb1-001
OTTP	OTTMUSP00000041036
OTTT	OTTMUST00000077545
RefSeq_mRNA	NM_133954.2
RefSeq_mRNA_predicted	XM_006530521.2
RefSeq_peptide	NP_598715
RefSeq_peptide_predicted	XP_006530584.1
UCSC	uc009myg.2

UniParc	UPI00000238A5
Vega_transcript	OTTMUST00000077545, Usb1-001
Vega_translation	204263, OTTMUSP00000041036

Definition

protein_id:ENSMUSP00000034245
translation:

MSSAPLVGYSSSGSEDEAEAVAAGRSKPGTGFHRCGQNPVPSEKLPVPDSVLSMFPSTEE
GPEDDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLMEE
FHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSG
HAQFLDLVSEVDRAMKEFDLTTFYQDPSFHVSLAWCVGDASLQLEGQCLQELQEIVDEFE
DSEMLLRVLANQVRCKSGNKFFSMPLK

Chromosome

Length
Position(start - end)

14268
95332362 - 95346631

Orient to Chromosome

plus

Link

Location : (8:95332362-95346631)
/

Detail Map

name	Zfp319 (ENSMUSG00000046556)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Zfp319 note : zinc finger protein 319 [Source:MGI Symbol;Acc:MGI:1890618]

name	Usb1 (ENSMUSG00000031792)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Usb1 note : U6 snRNA biogenesis 1 [Source:MGI Symbol;Acc:MGI:2142454]

name	Zfp319 (ENSMUSG00000046556)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000057717

name	Usb1 (ENSMUSG00000031792)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000034245

name	Usb1 (ENSMUSG00000031792)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000126180

name	Usb1 (ENSMUSG00000031792) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS22560.1 RefSeq_peptide:NP_598715 RefSeq_mRNA:NM_133954.2 RefSeq_mRNA_predicted:XM_006530521.2 RefSeq_peptide_predicted:XP_006530584.1 Vega_transcript:OTTMUST00000077545 Vega_transcript:Usb1-001 UCSC:uc009myg.2 GO:GO:0000175 GO:GO:0005634 GO:GO:0008380 GO:GO:0090503 MGI_trans_name:Usb1-001 Vega_translation:204263 Vega_translation:OTTMUSP00000041036 OTTP:OTTMUSP00000041036 OTTT:OTTMUST00000077545 UniParc:UPI00000238A5
definition	note : transcript_id=ENSMUST00000034245 protein_id : ENSMUSP00000034245 translation : MSSAPLVGYSSSGSEDEAEAVAAGRSKPGTGFHRCGQNPVPSEKLPVPDSVLSMFPSTEEGPEDDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLMEEFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFHVSLAWCVGDASLQLEGQCLQELQEIVDEFEDSEMLLRVLANQVRCKSGNKFFSMPLK

name	Usb1 (ENSMUSG00000031792) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000077546 Vega_transcript:Usb1-002 Uniprot/SPTREMBL:D3Z5I2 EMBL:AC165414 GO:GO:0000175 GO:GO:0005634 GO:GO:0008380 GO:GO:0034477 GO:GO:0090503 MGI_trans_name:Usb1-002 Vega_translation:204264 Vega_translation:OTTMUSP00000041037 goslim_goa:GO:0003674 goslim_goa:GO:0004518 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0008150 goslim_goa:GO:0034641 goslim_goa:GO:0043226 OTTP:OTTMUSP00000041037 OTTT:OTTMUST00000077546 UniParc:UPI000173A759
definition	note : transcript_id=ENSMUST00000126180 protein_id : ENSMUSP00000122529 translation : MFPSTEEGPEDDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLMEEFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQ

name
type	STS
link
xref	UniSTS_NUM:159793 UniSTS:AA960436 WI_MRC-RH:334144
definition	note : map_weight=1 standard_name : AA960436

name
type	misc_feature
link
xref
definition	note : contig AC165414.9 18300..192707(1)

name	Usb1 (ENSMUSG00000031792)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000077547 Vega_transcript:OTTMUST00000077547 MGI_trans_name:Usb1-003 OTTT:OTTMUST00000077547
definition	note : retained_intron note : transcript_id=ENSMUST00000145060

name	Usb1 (ENSMUSG00000031792)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000077548 Vega_transcript:OTTMUST00000077548 MGI_trans_name:Usb1-004 OTTT:OTTMUST00000077548
definition	note : retained_intron note : transcript_id=ENSMUST00000151223

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Usb1 (ENSMUSG00000031792)
Transcript ID	ENSMUST00000034245

Reports
substitution
cSNPs	7
Insertion	12
Deletion	25
SNPs	-1kb 95327301(c.-5061C>T), 95327309(c.-5053A>G), 95327491(c.-4871G>T), 95327984(c.-4378C>T), 95328086(c.-4276A>G), 95328135(c.-4227G>A), 95328176(c.-4186A>G), 95328251(c.-4111A>G), 95328539(c.-3823A>G), 95328563(c.-3799A>G), 95328794(c.-3568A>G), 95328836(c.-3526G>A), 95328995(c.-3367A>G), 95329010(c.-3352A>G), 95329052(c.-3310C>T), 95329337(c.-3025C>G), 95329472(c.-2890G>A), 95329517(c.-2845C>T), 95329667(c.-2695T>A), 95330008(c.-2354T>C), 95330053(c.-2309C>T), 95331346(c.-1016T>C), 95331395(c.-967G>A), 95331465(c.-897G>A), 95331998(c.-364T>G), 5'UTR 95332341(c.-21A>C), CDS 95333400(c.137C>T), 95338701(c.339G>T), 95338702(c.340A>C), 95338798(c.436C>T), 95343966(c.519C>T), 95345324(c.651A>G), 95346607(c.780A>G), 3'UTR 95346672(c.41G>A), 95346732(c.101A>T), 95347266(c.635G>T), 95347328(c.697A>G), INTRON 95332593(c.104+128A>C), 95333355(c.105-13T>G), 95333615(c.271+81C>G), 95333639(c.271+105T>C), 95333640(c.271+106G>A), 95333716(c.271+182G>A), 95333986(c.271+452C>T), 95335688(c.271+2154C>T), 95335719(c.271+2185A>G), 95336756(c.272-1878T>C), 95336781(c.272-1853G>A), 95337083(c.272-1551A>G), 95337274(c.272-1360C>T), 95337418(c.272-1216T>C), 95337546(c.272-1088A>G), 95337553(c.272-1081C>A), 95337643(c.272-991A>C), 95337672(c.272-962A>G), 95337718(c.272-916T>C), 95338027(c.272-607G>A), 95338249(c.272-385T>A), 95338355(c.272-279A>G), 95338362(c.272-272G>A), 95338370(c.272-264A>G), 95338558(c.272-76C>T), 95338604(c.272-30A>G), 95338607(c.272-27C>G), 95338623(c.272-11T>C), 95338834(c.455+17T>C), 95338882(c.455+65C>T), 95338961(c.455+144T>C), 95338965(c.455+148T>C), 95338994(c.455+177G>C), 95339015(c.455+198T>C), 95339049(c.455+232C>T), 95339137(c.455+320G>A), 95339161(c.455+344C>T), 95339192(c.455+375C>T), 95339426(c.455+609C>G), 95339525(c.455+708G>A), 95339567(c.455+750A>C), 95339578(c.455+761A>G), 95339585(c.455+768C>T), 95339590(c.455+773G>A), 95339686(c.455+869C>T), 95339949(c.455+1132C>T), 95340115(c.455+1298C>T), 95340354(c.455+1537C>G), 95340368(c.455+1551A>G), 95340394(c.455+1577A>G), 95340460(c.455+1643G>A), 95340469(c.455+1652G>A), 95340508(c.455+1691G>A), 95340628(c.455+1811A>G), 95340790(c.455+1973G>T), 95340841(c.455+2024G>C), 95340863(c.455+2046C>T), 95340884(c.455+2067T>C), 95340979(c.456-2143C>T), 95341055(c.456-2067T>G), 95341057(c.456-2065C>T), 95341264(c.456-1858G>A), 95341339(c.456-1783A>C), 95341481(c.456-1641A>G), 95341503(c.456-1619G>A), 95341525(c.456-1597T>A), 95341549(c.456-1573C>T), 95341570(c.456-1552A>G), 95341608(c.456-1514A>G), 95341610(c.456-1512T>A), 95341628(c.456-1494G>A), 95341662(c.456-1460T>C), 95341727(c.456-1395C>T), 95341833(c.456-1289G>T), 95341846(c.456-1276A>C), 95341861(c.456-1261A>C), 95341883(c.456-1239C>T), 95341956(c.456-1166G>A), 95341958(c.456-1164T>C), 95342098(c.456-1024T>C), 95342107(c.456-1015C>A), 95342231(c.456-891G>A), 95342275(c.456-847C>T), 95342280(c.456-842T>G), 95342282(c.456-840T>C), 95342283(c.456-839A>G), 95342387(c.456-735G>A), 95342421(c.456-701T>G), 95342495(c.456-627G>C), 95342555(c.456-567T>C), 95342688(c.456-434G>T), 95342691(c.456-431A>G), 95342711(c.456-411C>A), 95342781(c.456-341A>G), 95343195(c.509+20C>T), 95343300(c.509+125T>C), 95343339(c.509+164T>C), 95343352(c.509+177G>A), 95343362(c.509+187C>T), 95343368(c.509+193T>C), 95343441(c.509+266T>C), 95343507(c.509+332G>C), 95343560(c.509+385T>C), 95343575(c.510-382T>G), 95343579(c.510-378C>G), 95343641(c.510-316A>G), 95343648(c.510-309G>A), 95343714(c.510-243G>A), 95344092(c.615+30A>G), 95344101(c.615+39A>T), 95344415(c.615+353C>T), 95345063(c.616-226T>C), 95345180(c.616-109T>G), 95345393(c.699+21C>A), 95345836(c.699+464T>A), 95345906(c.699+534A>G), 95346143(c.700-384T>C), 95346287(c.700-240G>A), 95346381(c.700-146A>G), +1kb 95347693(c.1062C>A), 95347728(c.1097G>T), 95347836(c.1205G>A), 95347866(c.1235A>G), 95348398(c.1767C>T), 95348614(c.1983C>A), 95349100(c.2469T>C), 95349553(c.2922C>T), 95349601(c.2970C>T), 95349991(c.3360T>A), 95350014(c.3383T>C), 95350031(c.3400C>A), 95350039(c.3408C>T), 95350054(c.3423C>T), 95350160(c.3529T>C), 95350171(c.3540C>T), 95350331(c.3700G>A), 95350796(c.4165A>T), 95350990(c.4359G>A), 95351165(c.4534A>C), 95351257(c.4626G>A), 95351276(c.4645G>A), 95351456(c.4825C>T), 95351502(c.4871G>A), 95351539(c.4908T>G), 95351615(c.4984T>A), 95352143(c.5512G>C), 95352189(c.5558C>A), 95352326(c.5695C>T), 95352413(c.5782G>A),
Insertions	-1kb 95327302 (c.-5060_-5059insCTAACT), 5'UTR CDS 3'UTR INTRON 95333938 (c.271+425_271+428dupTTTG), 95335055 (c.271+1522_271+1523insAA), 95340684 (c.455+1871dupG), 95341539 (c.456-1583_456-1582dupTT), 95342421 (c.456-701_456-700insCA), 95342485 (c.456-635_456-634insTTTTGT), 95343822 (c.510-134_510-133insAAGAAA), 95344375 (c.615+315_615+316insGAAGAG), 95346002 (c.700-523_700-522insCCA), +1kb 95349992 (c.3361_3362insC), 95351886 (c.5255_5256insC),
Deletions	-1kb 5'UTR CDS 3'UTR INTRON 95332710 (c.104+259_104+263delTTTTT), 95334559 (c.271+1037delC), 95335301 (c.271+1773_271+1781delGGGGGGGGG), 95337718 (c.272-915delG), 95338011 (c.272-614delT), 95338530 (c.272-103delA), 95339327 (c.455+511_455+512delCC), 95339343 (c.455+527_455+534delATTTGTTT), 95339838 (c.455+1022_455+1028delTCCATCC), 95341207 (c.456-1913delG), 95341404 (c.456-1717delC), 95341895 (c.456-1226_456-1224delGGT), 95341911 (c.456-1210_456-1209delTA), 95345228 (c.616-55delG), +1kb 95349216 (c.2586_2588delGAG), 95350101 (c.3471delA), 95350108 (c.3478delA), 95350316 (c.3686delT), 95350480 (c.3850_3851delGT), 95350525 (c.3895_3896delGG), 95350625 (c.3995_3996delAA), 95350759 (c.4129delT), 95350981 (c.4351_4352delAA), 95351548 (c.4918delA), 95351714 (c.5084_*5088delCTCTG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	5
non-synonymous num	2
synonymous substitutions	95338701 (p.Pro113Pro), 95338702 (p.Arg114Arg), 95343966 (p.Ile173Ile), 95345324 (p.Val217Val), 95346607 (p.Lys260Lys),
non-synonymous substitutions	95333400 (p.Pro46Leu), 95338798 (p.Arg146Cys),
B6 transcript (ENSMUST00000034245)	MSSAPLVGYSSSGSEDEAEAVAAGRSKPGTGFHRCGQNPVPSEKLPVPDSVLSMFPSTEE GPEDDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLMEE FHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSG HAQFLDLVSEVDRAMKEFDLTTFYQDPSFHVSLAWCVGDASLQLEGQCLQELQEIVDEFE DSEMLLRVLANQVRCKSGNKFFSMPLK*
MSMv4 transcript	MSSAPLVGYSSSGSEDEAEAVAAGRSKPGTGFHRCGQNPVPSEKLLVPDSVLSMFPSTEE GPEDDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLMEE FHVSLSQSVVLRHHWILPFVQVLKDCMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSG HAQFLDLVSEVDRAMKEFDLTTFYQDPSFHVSLAWCVGDASLQLEGQCLQELQEIVDEFE DSEMLLRVLANQVRCKSGNKFFSMPLK*
homology	99.25 (268 / 268)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Usb1 (ENSMUSG00000031792)
Transcript ID	ENSMUST00000034245


..........GCCCAGCTGGGCTGCCTGCTGTCAGCTCCTGCTCCGGATGGCCCAGCCAC
TGCGCCCCGAAAAGGGGGTGGTTCCGGCCGAGGAAGGCCCCAGAGCCTCAAACAGTGCCC
GGGAAGCAACTGTACTTCCAGGCCCAGCCTGGATCGCCTCGGAGCTCAGGAGGCTCTCCC
TGGATGCAGGGGCTACTGGAGTGGCCCCCAGATGCAGTCCCGGGTGCCCTGCCACTCACC
TGCTCCAGGGGTCAGGCGCGGGACAAGCGAAGACCAGCTGCTTTCTCTGCCGCCTCTTTA
TTCCGGCTCCATCCGCCGCGGCGCGGCCTACGCGTCCTGCCAATCCCCGGGCCTCGCGTA
GCAGAGGCAGGCAGCGCGGAGTCGGGAGACAGGTTTGCAGCAGCCGGAACCGACGAATCG
ACCCGCGCACTCGGGTTAGCGGGACCGGGGCAGCGGACGGACGGGCGAGCGGACAGACCG
ACGGGTCTTGCAGAGACCGGCGGACAGAGGGTCGGCGCGAGGCCGGGTAGGCGGGGCCGG
GGGAGGAGCGGCAGCCGGGGCGGCGGCTGCCGAGAAGCCCGCGGCGCGGAGCGAGGCCGC
CCCCTGTCGGGGACCCGCGGCCCCGCTGGCCCGAGCCTGTGGGTACGGAGGGGCGGGGCT
GGAGCCTCGGGATCCGCTCGCCGGAGCCTACGGTCGCGGAGGAGCCGGGATCCTCAGCCC
CGGCTCGCCGCAGCCCCACCTGACTCTCCGGTCTTCTGCAGCTGACCTGCGGCTCAGCTC
GCTCTCAAGAGGGATCCTGAGACTCCAACTTTTTGCAAGTCTGGCAAACAGACCCGCAGA
CCTGTGGAACCCACACTGGGGCGACGGAGTGATCCGGAAGGCCGCCTCCTACAGCCTTTA
CCGCACAGGCGGTGGCCGCCGTCCGTCCTAAGCTCCACTGGGCTTCGCCCCCCGGGTCGC
CAGGCCCCGCCCCGAGGTGGAGCTACTCTAGGTCCCGCCCCCCACAGAGC
ACTTCCGGCTCAGAGGAACTCCGGGCGTCGGATCAGGTTGTCGGTGGACCCGGCTTGTGGTCGAGGCCCCATGAGCTCGGCGCCCCTGGTGGGCTACAGCAGCAGCGGTTCAGAGGATGAAGCGGAGGCTGTCGCCGCGGGGCGGAGCAAACCGGGTACTGGCTTCCACCGTTG
GTGAGGATCGAGGAATTTTTCTCTC..........ATAAATGTGTGTGCTTCTTTTGCAG
TGGCCAGAACCCCGTTCCCAGTGAGAAGCTTCTAGTGCCTGACAGTGTGCTAAGTATGTTCCCCAGCACAGAGGAAGGGCCTGAGGACGACAGTGCAAAGCATGGCGGTCGAATCCGAACCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGT
GTGAGTCACTGACTAAAGTGCCTCT..........CTCTAAGCTCCCTACGCTTCTCTAG
ATGAGGCGAAGGAGGACTTCCGGGATCTGCTTGACGCGTTGCTGCCCCGAGCTCAGATGTTTGTACCTCGACTGGTACTGATGGAGGAGTTCCACGTCAGCCTGTCCCAGAGCGTGGTTCTCCGTCACCACTGGATCCTCCCCTTTGTGCAGGTGCTCAAGGACTGCATGGCCTCTTTCCAAAG
GTGAGCACCTCCTCTTCGGTCAGTT..........ATATCTTTCTTCCTTTAAATTTCAG
GTTCTTCTTTACTGCCAACAGGGTAAAGATTTACACCAATCAAGAGAAAACCAG
GTGGGTCCCTGACCTAAGTTGGCAG..........TGTTGTCTCTACTGCCTCTTCCCAG
GACCTTCATTGGGCTGGAGGTCAGTTCAGGGCATGCCCAGTTCCTGGACCTGGTTTCAGAGGTGGACAGAGCCATGAAGGAATTTGACCTTACTACTTTCTACCAG
GTAATGCACAGGGCTGAGGTAAGGG..........CTAACTCCCAGCTTTTCTTCCCCAG
GACCCCTCATTTCATGTCAGCCTGGCCTGGTGTGTGGGTGATGCTAGTCTCCAGCTGGAGGGACAGTGCCTGCAGGAACTACAG
GTGAATTTCCAGAGCAGGGAAACAG..........GTCATCTCCCTGTTGCTGGCTGAAG
GAAATCGTGGATGAGTTTGAAGACTCTGAGATGCTGTTACGTGTGCTGGCCAACCAGGTCCGCTGCAAGTCCGGGAACAAGTTCTTCTCCATGCCTTTGAAGTGAGCCTTGTCCCGTGCCTCTCCACAAGCCGACTGAGATGGAGAAACTTGCTGCCATCTGTGGGATGCCCCAGCCAGGAGTCCTAATCCCACACTTAGTACTGTTCTAGTGGGCTGCTCACTCTCTCCTGGTCCTTAGGTTGGTAGGCTGCTACTGTAATGTGCTCATTTCCAGAAATCACCAGTAGAGGGCAGCCCGGACCTCTAATTCTTCCTCCACTTTCTTAGGAAAGTCAAATGAGCCTGGCTGGGGAGCCCACCCACGCTCAGTCCCCACCGAGGTCTCTCCACTGCAGTAATCTATATTGATGCCCTTGGCCGTCAACCACTTTTTTAGATCCCTGTGTTCTGACCCACCTGTGTCAGACTGGGGCTTCCGTTGTCTGTCAGCCTCTCTTTAATCTCCTTTATTTATCACCTCGTCCCTTCATCCCGTCCTGTGCCAGGAGAGGTCATTTCAGGGCCAGGGCACAGGGTGCTAATTTGTGGTCAGCAGCAGTTTTCTTCATTCCTTCCTCCCACTTACCCAGCCAGGTGCCTGGGGAGAGCCCAGCAGATGCTTCATTTTGGCTTGGCTATGGCTGCTGGCCAGGCCTCCAACACCCATGACCCCTACTTTCCCCATCAGCTTTCCCAGATATGCAAAGAGGCATCTTCCCTCCAGCCAGAGCACCCCTGCCCCTGTTGCTGAGCATTTTTCGAAGTGGGGGTGGGAAGTGGGGAGAGGGCCAGGGAGGCATTGGAGAATTTATTTTCCATCAAGCTCCTACCAGGGCAAAGAGCCAAACCTTTCTAGTTGTCATGGGGATTTCTAGTGATGGATGAAGAAATATTTTTTTACAGTTTTAAATTATGTTCAACAAATAAAATCTGCCTTTTT
AATGTGGTGTCTTATTTTAAACTACTTCTACTTTAAAAGGTGAGTGGTGCCTCTGATCTC
CCCTCCAGCTGTGTTTCACAGTCCAGGGGCTCTTGGGAGGCTCTTACGACTTCAAAGATT
TTTAGGTATTTGTTTATTTTAGCATATGTATGTGTGTGTGCAGGCACACGAGTTCCGAGA
ACAGCACTCGGGAGACAGTTCTCTCCAGCCTCTTCATGGCTGCAGAGCCCACGTGGCAGC
CATTCTGACTCCAGCCCCTCTCAGGCCTTCTCCAGTGCCAGGCATGTATGTGGTACTTAC
TTATACTTCTCCAGTGCCAGGCATGTATATGGTACTTATACTTGCAGGCAAAACACCCGG
ACCCATAAAGTTTTTAAAAAGTGGGAGCTGGAGAGCTAGTTCAGGTAGTGATGTTCTTGC
TTTGTAAGTGTCAGGCCCTGAGTTCAGTCCTTAGAGCCCATCCTTTAGAAGCTGCCGTGG
TACCAAACACTTGTAATCTCTGCATTGGGGAGGCAGAAAGACAGAAGGAACCCTGGGCTT
ACTTGACAGCCAGCCCCATCTATTTCTCAAGCTCTAACCAATGAGAGACCCTGTCTCAAA
TAACAGCATGGATGGCCCCAAGGAACAACAAACGCCTAGGCTTGCCCTCTGGCTTGCACA
TGTGCACAGCCGTGTGCACATGCATGTCTACCTCTGCACACACATATACAGACATCCCCC
TACGCAAGAAAATAGGAAGATAGGGTTGCCATGTCTTGTAGGACTTCACCAGTGGCACTG
GGTTTCAGCATGTCCCAGGGAGATGCTATCCTCACTCCTCCGACACAACACTTAGACTTT
ATACCAGATGACCTGTACTAAGCCCTTCCTAGGGCCTTCACAGCTGAGCCTGGGGAAAGC
AACCTGGGTTGAGGTAATTACTATGGAAGAACAGTTACGTGGCTTGCTTGGGGACATGAG
AACATCAGGACCTGACTCAACCCTAGCCTCAGCTTCCACC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GCCCAGCTGGGCTGCCTGCTGTCAGCTCCTGCTCCGGATGGCCCAGCCAC TGCGCCCCGAAAAGGGGGTGGTTCCGGCCGAGGAAGGCCCCAGAGCCTCAAACAGTGCCC GGGAAGCAACTGTACTTCCAGGCCCAGCCTGGATCGCCTCGGAGCTCAGGAGGCTCTCCC TGGATGCAGGGGCTACTGGAGTGGCCCCCAGATGCAGTCCCGGGTGCCCTGCCACTCACC TGCTCCAGGGGTCAGGCGCGGGACAAGCGAAGACCAGCTGCTTTCTCTGCCGCCTCTTTA TTCCGGCTCCATCCGCCGCGGCGCGGCCTACGCGTCCTGCCAATCCCCGGGCCTCGCGTA GCAGAGGCAGGCAGCGCGGAGTCGGGAGACAGGTTTGCAGCAGCCGGAACCGACGAATCG ACCCGCGCACTCGGGTTAGCGGGACCGGGGCAGCGGACGGACGGGCGAGCGGACAGACCG ACGGGTCTTGCAGAGACCGGCGGACAGAGGGTCGGCGCGAGGCCGGGTAGGCGGGGCCGG GGGAGGAGCGGCAGCCGGGGCGGCGGCTGCCGAGAAGCCCGCGGCGCGGAGCGAGGCCGC CCCCTGTCGGGGACCCGCGGCCCCGCTGGCCCGAGCCTGTGGGTACGGAGGGGCGGGGCT GGAGCCTCGGGATCCGCTCGCCGGAGCCTACGGTCGCGGAGGAGCCGGGATCCTCAGCCC CGGCTCGCCGCAGCCCCACCTGACTCTCCGGTCTTCTGCAGCTGACCTGCGGCTCAGCTC GCTCTCAAGAGGGATCCTGAGACTCCAACTTTTTGCAAGTCTGGCAAACAGACCCGCAGA CCTGTGGAACCCACACTGGGGCGACGGAGTGATCCGGAAGGCCGCCTCCTACAGCCTTTA CCGCACAGGCGGTGGCCGCCGTCCGTCCTAAGCTCCACTGGGCTTCGCCCCCCGGGTCGC CAGGCCCCGCCCCGAGGTGGAGCTACTCTAGGTCCCGCCCCCCACAGAGC
1	EXON 1	95332292	95332465	-	2	174	ACTTCCGGCTCAGAGGAACTCCGGGCGTCGGATCAGGTTGTCGGTGGACCCGGCTTGTGG TCGAGGCCCCATGAGCTCGGCGCCCCTGGTGGGCTACAGCAGCAGCGGTTCAGAGGATGA AGCGGAGGCTGTCGCCGCGGGGCGGAGCAAACCGGGTACTGGCTTCCACCGTTG
	INTRON 1 - 2	95332466	95333367			902	GTGAGGATCGAGGAATTTTTCTCTC..........ATAAATGTGTGTGCTTCTTTTGCAG
2	EXON 2	95333368	95333534	2	1	167	TGGCCAGAACCCCGTTCCCAGTGAGAAGCTTCTAGTGCCTGACAGTGTGCTAAGTATGTT CCCCAGCACAGAGGAAGGGCCTGAGGACGACAGTGCAAAGCATGGCGGTCGAATCCGAAC CTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGT
	INTRON 2 - 3	95333535	95338633			5099	GTGAGTCACTGACTAAAGTGCCTCT..........CTCTAAGCTCCCTACGCTTCTCTAG
3	EXON 3	95338634	95338817	1	2	184	ATGAGGCGAAGGAGGACTTCCGGGATCTGCTTGACGCGTTGCTGCCCCGAGCTCAGATGT TTGTACCTCGACTGGTACTGATGGAGGAGTTCCACGTCAGCCTGTCCCAGAGCGTGGTTC TCCGTCACCACTGGATCCTCCCCTTTGTGCAGGTGCTCAAGGACTGCATGGCCTCTTTCC AAAG
	INTRON 3 - 4	95338818	95343121			4304	GTGAGCACCTCCTCTTCGGTCAGTT..........ATATCTTTCTTCCTTTAAATTTCAG
4	EXON 4	95343122	95343175	2	2	54	GTTCTTCTTTACTGCCAACAGGGTAAAGATTTACACCAATCAAGAGAAAACCAG
	INTRON 4 - 5	95343176	95343956			781	GTGGGTCCCTGACCTAAGTTGGCAG..........TGTTGTCTCTACTGCCTCTTCCCAG
5	EXON 5	95343957	95344062	2	0	106	GACCTTCATTGGGCTGGAGGTCAGTTCAGGGCATGCCCAGTTCCTGGACCTGGTTTCAGA GGTGGACAGAGCCATGAAGGAATTTGACCTTACTACTTTCTACCAG
	INTRON 5 - 6	95344063	95345288			1226	GTAATGCACAGGGCTGAGGTAAGGG..........CTAACTCCCAGCTTTTCTTCCCCAG
6	EXON 6	95345289	95345372	0	0	84	GACCCCTCATTTCATGTCAGCCTGGCCTGGTGTGTGGGTGATGCTAGTCTCCAGCTGGAG GGACAGTGCCTGCAGGAACTACAG
	INTRON 6 - 7	95345373	95346526			1154	GTGAATTTCCAGAGCAGGGAAACAG..........GTCATCTCCCTGTTGCTGGCTGAAG
7	EXON 7	95346527	95347507	0	-	981	GAAATCGTGGATGAGTTTGAAGACTCTGAGATGCTGTTACGTGTGCTGGCCAACCAGGTC CGCTGCAAGTCCGGGAACAAGTTCTTCTCCATGCCTTTGAAGTGAGCCTTGTCCCGTGCC TCTCCACAAGCCGACTGAGATGGAGAAACTTGCTGCCATCTGTGGGATGCCCCAGCCAGG AGTCCTAATCCCACACTTAGTACTGTTCTAGTGGGCTGCTCACTCTCTCCTGGTCCTTAG GTTGGTAGGCTGCTACTGTAATGTGCTCATTTCCAGAAATCACCAGTAGAGGGCAGCCCG GACCTCTAATTCTTCCTCCACTTTCTTAGGAAAGTCAAATGAGCCTGGCTGGGGAGCCCA CCCACGCTCAGTCCCCACCGAGGTCTCTCCACTGCAGTAATCTATATTGATGCCCTTGGC CGTCAACCACTTTTTTAGATCCCTGTGTTCTGACCCACCTGTGTCAGACTGGGGCTTCCG TTGTCTGTCAGCCTCTCTTTAATCTCCTTTATTTATCACCTCGTCCCTTCATCCCGTCCT GTGCCAGGAGAGGTCATTTCAGGGCCAGGGCACAGGGTGCTAATTTGTGGTCAGCAGCAG TTTTCTTCATTCCTTCCTCCCACTTACCCAGCCAGGTGCCTGGGGAGAGCCCAGCAGATG CTTCATTTTGGCTTGGCTATGGCTGCTGGCCAGGCCTCCAACACCCATGACCCCTACTTT CCCCATCAGCTTTCCCAGATATGCAAAGAGGCATCTTCCCTCCAGCCAGAGCACCCCTGC CCCTGTTGCTGAGCATTTTTCGAAGTGGGGGTGGGAAGTGGGGAGAGGGCCAGGGAGGCA TTGGAGAATTTATTTTCCATCAAGCTCCTACCAGGGCAAAGAGCCAAACCTTTCTAGTTG TCATGGGGATTTCTAGTGATGGATGAAGAAATATTTTTTTACAGTTTTAAATTATGTTCA ACAAATAAAATCTGCCTTTTT
	3' upstream sequence						AATGTGGTGTCTTATTTTAAACTACTTCTACTTTAAAAGGTGAGTGGTGCCTCTGATCTC CCCTCCAGCTGTGTTTCACAGTCCAGGGGCTCTTGGGAGGCTCTTACGACTTCAAAGATT TTTAGGTATTTGTTTATTTTAGCATATGTATGTGTGTGTGCAGGCACACGAGTTCCGAGA ACAGCACTCGGGAGACAGTTCTCTCCAGCCTCTTCATGGCTGCAGAGCCCACGTGGCAGC CATTCTGACTCCAGCCCCTCTCAGGCCTTCTCCAGTGCCAGGCATGTATGTGGTACTTAC TTATACTTCTCCAGTGCCAGGCATGTATATGGTACTTATACTTGCAGGCAAAACACCCGG ACCCATAAAGTTTTTAAAAAGTGGGAGCTGGAGAGCTAGTTCAGGTAGTGATGTTCTTGC TTTGTAAGTGTCAGGCCCTGAGTTCAGTCCTTAGAGCCCATCCTTTAGAAGCTGCCGTGG TACCAAACACTTGTAATCTCTGCATTGGGGAGGCAGAAAGACAGAAGGAACCCTGGGCTT ACTTGACAGCCAGCCCCATCTATTTCTCAAGCTCTAACCAATGAGAGACCCTGTCTCAAA TAACAGCATGGATGGCCCCAAGGAACAACAAACGCCTAGGCTTGCCCTCTGGCTTGCACA TGTGCACAGCCGTGTGCACATGCATGTCTACCTCTGCACACACATATACAGACATCCCCC TACGCAAGAAAATAGGAAGATAGGGTTGCCATGTCTTGTAGGACTTCACCAGTGGCACTG GGTTTCAGCATGTCCCAGGGAGATGCTATCCTCACTCCTCCGACACAACACTTAGACTTT ATACCAGATGACCTGTACTAAGCCCTTCCTAGGGCCTTCACAGCTGAGCCTGGGGAAAGC AACCTGGGTTGAGGTAATTACTATGGAAGAACAGTTACGTGGCTTGCTTGGGGACATGAG AACATCAGGACCTGACTCAACCCTAGCCTCAGCTTCCACC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Usb1 (ENSMUSG00000031792)
Transcript ID	ENSMUST00000034245

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 268 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information