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Target CDS Information

Gene Symbol (Gene ID) Usb1 (ENSMUSG00000031792)
Cross Reference
EMBL AC165414
GO GO:0000175, GO:0005634, GO:0008380, ...show all
goslim_goa GO:0003674, GO:0004518, GO:0005575, ...show all
MGI_trans_name Usb1-002
OTTP OTTMUSP00000041037
OTTT OTTMUST00000077546
UniParc UPI000173A759
Uniprot/SPTREMBL D3Z5I2
Vega_transcript OTTMUST00000077546, Usb1-002
Vega_translation 204264, OTTMUSP00000041037
Definition protein_id:ENSMUSP00000122529
translation:
MFPSTEEGPEDDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVP
RLVLMEEFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQ

Chromosome 8
Length
Position(start - end)
9741
95333423 - 95343165
Orient to Chromosome plus
Link Location : (8:95333423-95343165)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Usb1 (ENSMUSG00000031792)
Transcript ID ENSMUST00000126180
Reports
substitution
cSNPs3
Insertion9
Deletion14
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num1
synonymous substitutions 95338701 (p.Pro60Pro), 95338702 (p.Arg61Arg),
non-synonymous substitutions 95338798 (p.Arg93Cys),
B6 transcript
(ENSMUST00000126180)
MFPSTEEGPEDDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVP
RLVLMEEFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQ
MSMv4 transcript
MFPSTEEGPEDDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVP
RLVLMEEFHVSLSQSVVLRHHWILPFVQVLKDCMASFQRFFFTANRVKIYTNQ
homology99.12 (113 / 113)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Usb1 (ENSMUSG00000031792)
Transcript ID ENSMUST00000126180
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCCGCGGCGCGGCCTACGCGTCCTGCCAATCCCCGGGCCTCGCGTAGCAG
AGGCAGGCAGCGCGGAGTCGGGAGACAGGTTTGCAGCAGCCGGAACCGACGAATCGACCC
GCGCACTCGGGTTAGCGGGACCGGGGCAGCGGACGGACGGGCGAGCGGACAGACCGACGG
GTCTTGCAGAGACCGGCGGACAGAGGGTCGGCGCGAGGCCGGGTAGGCGGGGCCGGGGGA
GGAGCGGCAGCCGGGGCGGCGGCTGCCGAGAAGCCCGCGGCGCGGAGCGAGGCCGCCCCC
TGTCGGGGACCCGCGGCCCCGCTGGCCCGAGCCTGTGGGTACGGAGGGGCGGGGCTGGAG
CCTCGGGATCCGCTCGCCGGAGCCTACGGTCGCGGAGGAGCCGGGATCCTCAGCCCCGGC
TCGCCGCAGCCCCACCTGACTCTCCGGTCTTCTGCAGCTGACCTGCGGCTCAGCTCGCTC
TCAAGAGGGATCCTGAGACTCCAACTTTTTGCAAGTCTGGCAAACAGACCCGCAGACCTG
TGGAACCCACACTGGGGCGACGGAGTGATCCGGAAGGCCGCCTCCTACAGCCTTTACCGC
ACAGGCGGTGGCCGCCGTCCGTCCTAAGCTCCACTGGGCTTCGCCCCCCGGGTCGCCAGG
CCCCGCCCCGAGGTGGAGCTACTCTAGGTCCCGCCCCCCACAGAGCACTTCCGGCTCAGA
GGAACTCCGGGCGTCGGATCAGGTTGTCGGTGGACCCGGCTTGTGGTCGAGGCCCCATGA
GCTCGGCGCCCCTGGTGGGCTACAGCAGCAGCGGTTCAGAGGATGAAGCGGAGGCTGTCG
CCGCGGGGCGGAGCAAACCGGGTACTGGCTTCCACCGTTGGTGAGGATCGAGGAATTTTT
CTCTCTCGAGCGTAGATTCTTTTGAAACCCTAGTGGGACCCGAGCCTCCCGGGGAACCAA
GAGGGTGGGTCAGTTCCCCGGTAAGAGAAAAAGGGATGTCGAGGGAACGG
1 EXON 1 95332596 95333282 - - 687
ATTCAGGACACACCCTGGACAAAGCCCTGGAATGGCACTACCACACACACACCCTGGCTA
AGGCAAAGTTGGGAGTGAGGACACGGGTTCAAGTCCAGCCCTCTCCGTTGGTGCGTTTTT
TTTTTTTTTTTTTCTCTTTTGGAAAGCAACTATGTTTCTTCCCAGATGTTTCCTCGTTTG
AACACTATGCAATAATAACCCAAGCTTTTCGTTCGTCTAGTAAATGGTTAATGAATAGCC
ACCGTGAGCCACACGGTAGACTGGAGACACCAGCCTGTTGAAAAACCCATGAAAATCTCA
TGCGCCAAGAGGCTTAAATCTTCGAGGTTCTTAAATACTGGTCTTTGCTGACTGTAGTGT
GTCGGTTCATTGCACAAGAGCTCTAGCAAGTAAAAATATGCTCTACACGTGAGGAAATTA
ATGTAAGCCAAGATCACAGAGCTACTTGAGTTCAGGCCTGTCCAACTATCTAATAGGGAC
CTCCAAGCCACACTGCTACCTGCTGAAATGTTTCCATGGGGACCAAGAGCCAGCTGAGGT
CTGCCTTCCCAGCTAGGAAACTTAAGCAGTTCTAGAAAGCTATGGTTCTTTAGTAGAAGC
TCAACCCCTTCCTGGAAATGAACACTCAGCCATTGTGGCTGAGGGAGGAGGATCAAGTTC
GAGGCCAACATGGCAAGACTGGTGTGG
INTRON 1 - 2 95333283 95333367 85
GTAAGAATCACTGTGCATAACAGCT..........ATAAATGTGTGTGCTTCTTTTGCAG
2 EXON 2 95333368 95333534 - 1 167
TGGCCAGAACCCCGTTCCCAGTGAGAAGCTTCTAGTGCCTGACAGTGTGCTAAGTATGTT
CCCCAGCACAGAGGAAGGGCCTGAGGACGACAGTGCAAAGCATGGCGGTCGAATCCGAAC
CTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGT
INTRON 2 - 3 95333535 95338633 5099
GTGAGTCACTGACTAAAGTGCCTCT..........CTCTAAGCTCCCTACGCTTCTCTAG
3 EXON 3 95338634 95338817 1 2 184
ATGAGGCGAAGGAGGACTTCCGGGATCTGCTTGACGCGTTGCTGCCCCGAGCTCAGATGT
TTGTACCTCGACTGGTACTGATGGAGGAGTTCCACGTCAGCCTGTCCCAGAGCGTGGTTC
TCCGTCACCACTGGATCCTCCCCTTTGTGCAGGTGCTCAAGGACTGCATGGCCTCTTTCC
AAAG
INTRON 3 - 4 95338818 95343121 4304
GTGAGCACCTCCTCTTCGGTCAGTT..........ATATCTTTCTTCCTTTAAATTTCAG
4 EXON 4 95343122 95343165 2 - 44
GTTCTTCTTTACTGCCAACAGGGTAAAGATTTACACCAATCAAG
3' upstream sequence
AGAAAACCAGGTGGGTCCCTGACCTAAGTTGGCAGAAGAAGATTATCTGTTACCGAGAGA
GAGGGGCTGCTCTGTTCTCATCTGTATCTGTCGGGCATCGCTTCCCAGACCCAGACCTAC
CTAGGAGAAGAACTCGAGGGGTTTCAGGGGCAATACAGATGTAGGAACTATCTCAGTACA
GAGTGGACTGTGAAGGTGGAGACCTGTCCTTGTCTAGCTCCCCGACATAGAGATGAGGTC
CTGTTACCTTCCTTCCTGTACCGTCTCCCGCTTCCCCATGGCAAATGAGCCAATGAAGTT
TGAGGAGTTACAAGTCTTAAAGCATTAAGTGAGGTAAGGTGCCATTTTTATCCCCAGGGC
CTCCCTGTCCAGTTTACTCAGCAAGCCCTGCCTCCCGGCTGCTCTGAAAGGGCGCGCTCT
TCCTTCATTGTAGGCTCTCTGACTTTATAAGCTGAAGGGTGTCCAGGTGTGGGGAGCCAA
CCATGCCTGATATTGCTAAGCCAGAGAGGGGAGGGGGCAGAGGGTGGTGTATGCAGTGGT
AGATGAAGACCACCCTGCAAGGTTTCCTAGACATGAGAAGAGACCCCTAGTAAAAGGGAT
ATTTTAAGTCAAGAAGGAAAGTGGGTTGAAAGAGCTGGTTCATGGAGCAGCAAAGACATG
CACAGGAAGGTGAGATGAGCCACAACCTAAATCTTAGGCTTCCTGTTGGATACTTCCTGC
ACCAACCTGTATAGTTTGTGCTCTCATGCGCTGCATTTTGTGCCCCTGTTGTCTCTACTG
CCTCTTCCCAGGACCTTCATTGGGCTGGAGGTCAGTTCAGGGCATGCCCAGTTCCTGGAC
CTGGTTTCAGAGGTGGACAGAGCCATGAAGGAATTTGACCTTACTACTTTCTACCAGGTA
ATGCACAGGGCTGAGGTAAGGGAACAGAGATGGTTTCGGTTTCTGCCACAGGGCTGCTGC
TCTGCTAGCCCTGGAACAGAGCATCCTCAAAGAAGCCCCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Usb1 (ENSMUSG00000031792)
Transcript ID ENSMUST00000126180
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 113 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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