MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Alkbh4 (ENSMUSG00000039754)

Cross Reference

EMBL	AK008083, BC022729, GL456122
Fantom	2010004B12
GO	GO:0003779, GO:0005634, GO:0005737, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Alkbh4-002
OTTP	OTTMUSP00000030914
OTTT	OTTMUST00000062642
protein_id	AAH22729.1, BAB25449.1
RefSeq_mRNA_predicted	XM_006504502.2
RefSeq_peptide_predicted	XP_006504565.1

UCSC	uc009aab.1
UniParc	UPI00000250AE
Uniprot/SWISSPROT	Q9D8F1
Vega_transcript	Alkbh4-002, OTTMUST00000062642
Vega_translation	195764, OTTMUSP00000030914

Definition

protein_id:ENSMUSP00000040403
translation:

MAAAAEVSLLQECGCKGIRTCLICERQRHRDPPWQICLQKKCCFLYCPDTGWAAGAEGSD
LEGWAFPFPGVTLIQDFVTPEEEAEMVRLMDCDPWKLSQSGRKKQDYGPKVNFRKQKLKM
AGFQGLPGFSQKVVQRMGLYPGLEDFQPVEQCNLDYSPERGSAIDPHLDDAWLWGERLVS
LNLLSATVVSMSPEAPGSLLLCSAPSVRPDAFEDSLVAPSRSVPCQEVEVAITVPRRSLL
VLTGAARHQWTHAIHRRHIKARRVCATFRELSSEFLPGGKQQELGQELLQAALSFQGRPV

Chromosome

Length
Position(start - end)

4587
136136178 - 136140766

Orient to Chromosome

plus

Link

Location : (5:136136178-136140766)
/

Detail Map

name	Lrwd1 (ENSMUSG00000029703)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Lrwd1 note : leucine-rich repeats and WD repeat domain containing 1 [Source:MGI Symbol;Acc:MGI:1918985]

name	Alkbh4 (ENSMUSG00000039754)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Alkbh4 note : alkB, alkylation repair homolog 4 (E. coli) [Source:MGI Symbol;Acc:MGI:1919291]

name	Lrwd1 (ENSMUSG00000029703)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000006301

name	Lrwd1 (ENSMUSG00000029703)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000150406

name	Alkbh4 (ENSMUSG00000039754)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000136634

name	Alkbh4 (ENSMUSG00000039754)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000041100

name	Alkbh4 (ENSMUSG00000039754)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000125923

name	Alkbh4 (ENSMUSG00000039754)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000143229

name	Alkbh4 (ENSMUSG00000039754)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000100568

name	Lrwd1 (ENSMUSG00000029703) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS51666.1 Uniprot/SWISSPROT:Q8BUI3 RefSeq_peptide:NP_082167 RefSeq_mRNA:NM_027891.4 Vega_transcript:Lrwd1-001 Vega_transcript:OTTMUST00000062622 UCSC:uc008zzy.2 Fantom:1200011O22 Fantom:D230018C02 Fantom:D430018G14 Fantom:E430018D12 Fantom:I1C0027N22 Fantom:I730034M15 EMBL:AC087420 EMBL:AK004717 EMBL:AK051910 EMBL:AK084948 EMBL:AK153976 EMBL:AK167020 EMBL:AK167868 EMBL:BC048397 GO:GO:0003682 GO:GO:0003682 GO:GO:0005634 GO:GO:0005634 GO:GO:0005664 GO:GO:0005664 GO:GO:0005721 GO:GO:0005721 GO:GO:0005737 GO:GO:0005815 GO:GO:0006260 GO:GO:0006325 GO:GO:0006325 GO:GO:0008327 GO:GO:0008327 GO:GO:0016568 GO:GO:0031933 GO:GO:0031933 GO:GO:0035064 GO:GO:0035064 GO:GO:0071169 GO:GO:0071169 MGI_trans_name:Lrwd1-001 Vega_translation:195760 Vega_translation:OTTMUSP00000030901 goslim_goa:GO:0000228 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005694 goslim_goa:GO:0005737 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0006259 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0042393 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0051276 protein_id:AAH48397.1 protein_id:BAB23500.1 protein_id:BAC34810.1 protein_id:BAC39318.1 protein_id:BAE32292.1 protein_id:BAE39194.1 protein_id:BAE39884.1 OTTP:OTTMUSP00000030901 OTTT:OTTMUST00000062622 UniParc:UPI00000EAA2B
definition	note : transcript_id=ENSMUST00000006301 protein_id : ENSMUSP00000006301 translation : MAPLTPQLLLQRGRPKTDKLGKIQSLNLSGLQLLSEHLDPNLLGRLKKLRELDLSNNLLETLPANLGLSHLRILRCTNNQLGDVTALHQFPELEELNLEGNPFLTVSDNLKVSFLLPKLRKVNGKDTASTCSQVENLDRELMDRVTAHWQKFIATVSPEEETDKVRADFMRSAVRDVCYGPESLIEFTQWRVRMIAEELVASGGAQVQDAKVPVEHPQAAGASKFRAREVASKRPGKDPVTLPPSKRVRALPPAQAEGSPMGADGGQAALHLEPLHFLQCHSRNNSPKDLETQLWACAFEPAREEGHSRATSQTVATCGGEAVCVIDCQTGLVLHKYKVPGEEFFSVAWTALTVVTQAGHKKRWNMLAAAGLRGMVRLLHVRAGFCCSVIRAHKKAIATLCFSPSHETHLFTASYDKRIILWDIGVPNQDYKFQASQLLTLNCGSVPLRLCPVATCPDDFLLAGCEGGCYCWDVRLDQPQKQRVCEVNFIFSEDSKVSGQRVDGLAFVNEDVVASKGSGQGTIYLWSWSQTWAGRGRQSVLPVVILVRLQWSPTNLAYFSLSTCPGKNLVLCGDEEGSVWIYDVEHLLKEPPQATTLQPPTQILKWPQPTALGQPVTKTMINTVVANAAFTYLTALTDSNIVSIWRRC

name	Lrwd1 (ENSMUSG00000029703) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Lrwd1-007 Vega_transcript:OTTMUST00000062628 Uniprot/SPTREMBL:H9KV12 EMBL:AC087420 GO:GO:0003682 GO:GO:0005634 GO:GO:0005664 GO:GO:0005721 GO:GO:0006325 GO:GO:0008327 GO:GO:0031933 GO:GO:0035064 GO:GO:0071169 MGI_trans_name:Lrwd1-007 Vega_translation:195762 Vega_translation:OTTMUSP00000030903 goslim_goa:GO:0000228 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005694 goslim_goa:GO:0008150 goslim_goa:GO:0042393 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0051276 OTTP:OTTMUSP00000030903 OTTT:OTTMUST00000062628 UniParc:UPI00015AA3C4
definition	note : transcript_id=ENSMUST00000150406 protein_id : ENSMUSP00000121513 translation : MAPLTPQLLLQRGRPKTDKLGKIQSLNSLALCPHPSLSGLQLLSEHLDPNLLGRLKKLRELDLSNNLLETLPANLGLSHLRILRCTNNQLGDVTALHQFPELEELNLEGNPFLTVSDNLKVSFLLPKLRKVNGKDTASTCSQVENLDRELMDRVTAHWQKFIATVSPEEETDKVRADFMRSAVRDVCYGPESLIEFTQWRVRMIAEELVASGGAQV

name	Alkbh4 (ENSMUSG00000039754) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Alkbh4-003 Vega_transcript:OTTMUST00000062643 Uniprot/SPTREMBL:D3Z7X9 UCSC:uc009aaa.1 EMBL:AC087420 GO:GO:0003779 GO:GO:0006482 GO:GO:0030496 GO:GO:0031032 GO:GO:0036090 GO:GO:0070938 MGI_trans_name:Alkbh4-003 Vega_translation:195763 Vega_translation:OTTMUSP00000030915 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007049 goslim_goa:GO:0008092 goslim_goa:GO:0008150 goslim_goa:GO:0051301 OTTP:OTTMUSP00000030915 OTTT:OTTMUST00000062643 UniParc:UPI00015AA3C6
definition	note : transcript_id=ENSMUST00000136634 protein_id : ENSMUSP00000119887 translation : MVRLMDCDPWKLSQSGRKKQDYGPKVNFRKQKLKMAGFQGLPGFSQKVVQRMGLYPGLEDFQPVEQCNLDYSPERGSAIDPHLDDAWLWGERLVSLNLLSATVVSMSPEAPGSLLLCSAPSVRPDAFEDSL

name	Alkbh4 (ENSMUSG00000039754) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q9D8F1 RefSeq_mRNA_predicted:XM_006504502.2 RefSeq_peptide_predicted:XP_006504565.1 Vega_transcript:Alkbh4-002 Vega_transcript:OTTMUST00000062642 UCSC:uc009aab.1 Fantom:2010004B12 EMBL:AK008083 EMBL:BC022729 EMBL:GL456122 GO:GO:0003779 GO:GO:0005634 GO:GO:0005737 GO:GO:0006351 GO:GO:0006355 GO:GO:0006482 GO:GO:0030496 GO:GO:0031032 GO:GO:0036090 GO:GO:0046872 GO:GO:0055114 GO:GO:0070938 MGI_trans_name:Alkbh4-002 Vega_translation:195764 Vega_translation:OTTMUSP00000030914 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007049 goslim_goa:GO:0008092 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0051301 protein_id:AAH22729.1 protein_id:BAB25449.1 OTTP:OTTMUSP00000030914 OTTT:OTTMUST00000062642 UniParc:UPI00000250AE
definition	note : transcript_id=ENSMUST00000041100 protein_id : ENSMUSP00000040403 translation : MAAAAEVSLLQECGCKGIRTCLICERQRHRDPPWQICLQKKCCFLYCPDTGWAAGAEGSDLEGWAFPFPGVTLIQDFVTPEEEAEMVRLMDCDPWKLSQSGRKKQDYGPKVNFRKQKLKMAGFQGLPGFSQKVVQRMGLYPGLEDFQPVEQCNLDYSPERGSAIDPHLDDAWLWGERLVSLNLLSATVVSMSPEAPGSLLLCSAPSVRPDAFEDSLVAPSRSVPCQEVEVAITVPRRSLLVLTGAARHQWTHAIHRRHIKARRVCATFRELSSEFLPGGKQQELGQELLQAALSFQGRPV

name	Alkbh4 (ENSMUSG00000039754) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Alkbh4-004 Vega_transcript:OTTMUST00000062644 Uniprot/SPTREMBL:D6RFB6 EMBL:AC087420 GO:GO:0003779 GO:GO:0006482 GO:GO:0030496 GO:GO:0031032 GO:GO:0036090 GO:GO:0070938 MGI_trans_name:Alkbh4-004 Vega_translation:195765 Vega_translation:OTTMUSP00000030916 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007049 goslim_goa:GO:0008092 goslim_goa:GO:0008150 goslim_goa:GO:0051301 OTTP:OTTMUSP00000030916 OTTT:OTTMUST00000062644 UniParc:UPI00015AA3C7
definition	note : transcript_id=ENSMUST00000125923 protein_id : ENSMUSP00000117167 translation : MAAAAEVSLLQECGCKGIRTCLICERQRHRDPPWQICLQVRTRKRVIARKSIHLNGKLRPSLPVKQPRTKASR

name	Alkbh4 (ENSMUSG00000039754) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Alkbh4-005 Vega_transcript:OTTMUST00000062645 Uniprot/SPTREMBL:F7B4H2 UCSC:uc009aab.1 EMBL:AC087420 GO:GO:0003779 GO:GO:0006482 GO:GO:0030496 GO:GO:0031032 GO:GO:0036090 GO:GO:0070938 MGI_trans_name:Alkbh4-005 Vega_translation:195766 Vega_translation:OTTMUSP00000030917 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007049 goslim_goa:GO:0008092 goslim_goa:GO:0008150 goslim_goa:GO:0051301 OTTP:OTTMUSP00000030917 OTTT:OTTMUST00000062645 UniParc:UPI00015AA3C5
definition	note : transcript_id=ENSMUST00000143229 protein_id : ENSMUSP00000116402 translation : LLQECGCKGIRTCLICERQRHRDPPWQICLQKKCCFLYCPDTGWAAGAEGSDLEGWAFPFPGVTLIQDFVTPEEEAEMVRLMDCDPWKLSQSGRKKQVRWPELSRGLWP

name	Alkbh4 (ENSMUSG00000039754) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS19753.1 Uniprot/SWISSPROT:Q9D8F1 RefSeq_peptide:NP_082346 RefSeq_mRNA:NM_028070.1 RefSeq_mRNA_predicted:XM_006504503 RefSeq_mRNA_predicted:XM_006504504 RefSeq_mRNA_predicted:XM_006504505 RefSeq_peptide_predicted:XP_006504566.1 RefSeq_peptide_predicted:XP_006504567.1 RefSeq_peptide_predicted:XP_006504568.1 Vega_transcript:Alkbh4-001 Vega_transcript:OTTMUST00000062641 UCSC:uc009aac.1 Fantom:2010004B12 EMBL:AK008083 EMBL:BC022729 EMBL:GL456122 GO:GO:0003779 GO:GO:0003779 GO:GO:0005515 GO:GO:0005634 GO:GO:0005737 GO:GO:0006351 GO:GO:0006355 GO:GO:0006482 GO:GO:0006482 GO:GO:0030496 GO:GO:0030496 GO:GO:0031032 GO:GO:0031032 GO:GO:0036090 GO:GO:0036090 GO:GO:0046872 GO:GO:0055114 GO:GO:0070938 GO:GO:0070938 MGI_trans_name:Alkbh4-001 Vega_translation:195767 Vega_translation:OTTMUSP00000030913 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0007010 goslim_goa:GO:0007049 goslim_goa:GO:0008092 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0051301 protein_id:AAH22729.1 protein_id:BAB25449.1 OTTP:OTTMUSP00000030913 OTTT:OTTMUST00000062641 UniParc:UPI00000E7237
definition	note : transcript_id=ENSMUST00000100568 protein_id : ENSMUSP00000098134 translation : MVRLMDCDPWKLSQSGRKKQDYGPKVNFRKQKLKMAGFQGLPGFSQKVVQRMGLYPGLEDFQPVEQCNLDYSPERGSAIDPHLDDAWLWGERLVSLNLLSATVVSMSPEAPGSLLLCSAPSVRPDAFEDSLVAPSRSVPCQEVEVAITVPRRSLLVLTGAARHQWTHAIHRRHIKARRVCATFRELSSEFLPGGKQQELGQELLQAALSFQGRPV

name
type	misc_feature
link
xref
definition	note : contig AC087420.4 4535..232462(1)

name	Lrwd1 (ENSMUSG00000029703)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000062625 Vega_transcript:OTTMUST00000062625 MGI_trans_name:Lrwd1-004 OTTT:OTTMUST00000062625
definition	note : retained_intron note : transcript_id=ENSMUST00000132976

name	Lrwd1 (ENSMUSG00000029703)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000062624 Vega_transcript:OTTMUST00000062624 MGI_trans_name:Lrwd1-003 OTTT:OTTMUST00000062624
definition	note : retained_intron note : transcript_id=ENSMUST00000148475

name	Lrwd1 (ENSMUSG00000029703)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000134906 Vega_transcript:OTTMUST00000134906 MGI_trans_name:Lrwd1-009 OTTT:OTTMUST00000134906
definition	note : retained_intron note : transcript_id=ENSMUST00000199786

name	Lrwd1 (ENSMUSG00000029703)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000062623 Vega_transcript:OTTMUST00000062623 MGI_trans_name:Lrwd1-002 OTTT:OTTMUST00000062623
definition	note : retained_intron note : transcript_id=ENSMUST00000139908

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Alkbh4 (ENSMUSG00000039754)
Transcript ID	ENSMUST00000041100

Reports
substitution
cSNPs	9
Insertion	8
Deletion	17
SNPs	-1kb 136131292(c.-4886T>C), 136131413(c.-4765C>T), 136131666(c.-4512T>A), 136131667(c.-4511A>T), 136131728(c.-4450G>A), 136131881(c.-4297A>G), 136132015(c.-4163T>C), 136132104(c.-4074A>G), 136132255(c.-3923C>G), 136132289(c.-3889T>C), 136132298(c.-3880G>A), 136132544(c.-3634G>A), 136132587(c.-3591G>A), 136132823(c.-3355T>A), 136132945(c.-3233T>C), 136132956(c.-3222T>C), 136133024(c.-3154G>T), 136133107(c.-3071A>G), 136133214(c.-2964C>T), 136133300(c.-2878T>C), 136133383(c.-2795C>T), 136133408(c.-2770C>T), 136133461(c.-2717C>G), 136133494(c.-2684G>T), 136133581(c.-2597G>T), 136133612(c.-2566A>G), 136133801(c.-2377A>C), 136133874(c.-2304G>A), 136133879(c.-2299A>C), 136134238(c.-1940C>G), 136134397(c.-1781C>T), 136134410(c.-1768A>G), 136134492(c.-1686C>T), 136134541(c.-1637T>C), 136134544(c.-1634G>A), 136134568(c.-1610C>T), 136134768(c.-1410A>G), 136134870(c.-1308T>C), 136134894(c.-1284G>A), 136134951(c.-1227A>G), 136135170(c.-1008G>A), 136135217(c.-961T>G), 136135666(c.-512A>G), 136135925(c.-253G>A), 136136076(c.-102T>C), 136136141(c.-37G>A), 5'UTR 136136175(c.-3G>A), 136136177(c.-1G>T), CDS 136136209(c.32A>C), 136140238(c.375T>A), 136140358(c.495C>T), 136140541(c.678G>A), 136140561(c.698C>T), 136140562(c.699A>G), 136140578(c.715T>C), 136140586(c.723G>A), 136140676(c.813G>A), 3'UTR 136141052(c.286T>G), 136141054(c.288C>T), 136141296(c.530T>C), 136141561(c.795A>G), INTRON 136136401(c.117+107T>G), 136136491(c.117+197A>G), 136136498(c.117+204T>C), 136136543(c.117+249C>T), 136136572(c.117+278A>C), 136136957(c.117+663A>T), 136137047(c.117+753G>A), 136137391(c.117+1097C>T), 136137480(c.117+1186C>T), 136137509(c.117+1215T>C), 136137554(c.117+1260G>A), 136137978(c.118-1360G>A), 136138766(c.118-572T>A), 136138911(c.118-427G>A), 136139054(c.118-284C>T), 136139081(c.118-257A>G), 136139171(c.118-167C>T), 136139809(c.315+274T>C), +1kb 136141646(c.880A>G), 136141765(c.999C>T), 136142305(c.1539C>T), 136142340(c.1574G>T), 136142347(c.1581T>C), 136142749(c.1983T>C), 136142751(c.1985G>A), 136142758(c.1992A>G), 136142912(c.2146A>G), 136143198(c.2432A>G), 136143346(c.2580G>A), 136143382(c.2616C>G), 136143385(c.2619A>G), 136143509(c.2743A>T), 136143615(c.2849C>T), 136143797(c.3031A>C), 136143803(c.3037T>C), 136143833(c.3067T>C), 136143854(c.3088C>T), 136143999(c.3233A>G), 136144002(c.3236G>A), 136144010(c.3244A>C), 136144034(c.3268C>T), 136144201(c.3435A>G), 136144307(c.3541A>T), 136144361(c.3595C>T), 136144413(c.3647A>G), 136144453(c.3687T>G), 136144470(c.3704G>A), 136144550(c.3784C>T), 136144593(c.3827T>C), 136144598(c.3832C>T), 136144687(c.3921T>G), 136144985(c.4219G>A), 136145009(c.4243T>C), 136145111(c.4345C>G), 136145349(c.4583C>T), 136145446(c.4680C>G), 136145469(c.4703C>A), 136145598(c.4832A>G), 136145857(c.5091G>A), 136146036(c.5270G>A), 136146043(c.5277C>T), 136146045(c.5279C>G), 136146288(c.5522G>A), 136146289(c.5523T>C), 136146304(c.5538G>C), 136146333(c.5567A>G), 136146351(c.5585C>T), 136146394(c.5628C>G), 136146502(c.5736T>C), 136146580(c.5814A>G),
Insertions	-1kb 136134120 (c.-2058dupG), 136134217 (c.-1961_-1960insTTT), 5'UTR CDS 136136179 (c.12_14dupGGC), 3'UTR INTRON 136136454 (c.117+160_117+161insGCTTCC), 136138427 (c.118-911dupC), +1kb 136143271 (c.2505_2506insATT), 136143500 (c.2734_2735insTT), 136145969 (c.5203_5204insC),
Deletions	-1kb 136131308 (c.-4869_-4867delCCC), 136131687 (c.-4490_-4487delTTTT), 136135598 (c.-579delT), 5'UTR CDS 3'UTR INTRON 136136533 (c.117+240delG), 136136635 (c.117+342_117+361delTGGGGGTGGGGGGCAGTGGT), 136136949 (c.117+660delG), 136137268 (c.117+975_117+982delTGAATGAA), 136137391 (c.117+1098_117+1105delGACAGACA), 136138048 (c.118-1280delA), 136138525 (c.118-807_118-804delGTTG), 136138530 (c.118-807_118-803delGTTGT), 136138761 (c.118-575_118-572delTGCT), +1kb 136142460 (c.1695_1699delGAATC), 136142514 (c.1749_1755delGCCAGCA), 136143419 (c.2654delG), 136144960 (c.4195_4202delGCCCCCCA), 136145347 (c.4582delC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	7
non-synonymous num	2
synonymous substitutions	136140238 (p.Gly125Gly), 136140358 (p.Asp165Asp), 136140541 (p.Gln226Gln), 136140562 (p.Thr233Thr), 136140578 (p.Leu239Leu), 136140586 (p.Val241Val), 136140676 (p.Leu271Leu),
non-synonymous substitutions	136136209 (p.Gln11Pro), 136140561 (p.Thr233Ile),
B6 transcript (ENSMUST00000041100)	MAAAAEVSLLQECGCKGIRTCLICERQRHRDPPWQICLQKKCCFLYCPDTGWAAGAEGSD LEGWAFPFPGVTLIQDFVTPEEEAEMVRLMDCDPWKLSQSGRKKQDYGPKVNFRKQKLKM AGFQGLPGFSQKVVQRMGLYPGLEDFQPVEQCNLDYSPERGSAIDPHLDDAWLWGERLVS LNLLSATVVSMSPEAPGSLLLCSAPSVRPDAFEDSLVAPSRSVPCQEVEVAITVPRRSLL VLTGAARHQWTHAIHRRHIKARRVCATFRELSSEFLPGGKQQELGQELLQAALSFQGRPV *
MSMv4 transcript	MAAAAEVSLLPECGCKGIRTCLICERQRHRDPPWQICLQKKCCFLYCPDTGWAAGAEGSD LEGWAFPFPGVTLIQDFVTPEEEAEMVRLMDCDPWKLSQSGRKKQDYGPKVNFRKQKLKM AGFQGLPGFSQKVVQRMGLYPGLEDFQPVEQCNLDYSPERGSAIDPHLDDAWLWGERLVS LNLLSATVVSMSPEAPGSLLLCSAPSVRPDAFEDSLVAPSRSVPCQEVEVAIMVPRRSLL VLTGAARHQWTHAIHRRHIKARRVCATFRELSSEFLPGGKQQELGQELLQAALSFQGRPV *
homology	99.34 (301 / 301)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Alkbh4 (ENSMUSG00000039754)
Transcript ID	ENSMUST00000041100

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TATGTATCTGTGTGTGATGTGTGGATAGGAATGGGCACAATCAAAGCGTG ATTAAGGGGGTCAGGGTTTTAGGGAGCTGCTTTGCTCCACTGTCTGGGCCCAAGGGATTG AATTCAGGCTTGATGACAGACAGGCACCTTTATCTGCAGATCATTTCTGTGGCCCATCTT CCCTCCCTTAAAGAGTACTTTGTTGCCGGGCAGTGGTGGCACACGCACGCCTTTAATCCC AGCACTTGTGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAAGCCAGCCTGGTCTACAGAG TGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAACAAACAGGCAAG CAAACAAACAAAACAAAATGACTTTAGAGCCCAAGACTTCCAAGTTCCTTCTTGTTTTTA CTAGTTCCTGCTAGCCCGTTCCGTGCTACACAGGATCCCTCAACATCCCTTAGTATCTCA TCAGTCTTTCCACTCCGCGCAAGGCTAAGGGCGTTCGCTCCAGGTTTATCTGACGCCGGG CGTTGGCTGCCAATCTCCCACATCTCCGTTTGGCGCGAGATTCGACTGGGGCTCGAATCC CGGATAACAGAATAACCCGGGCAGGAGGAGGAGACGGAGGGGTCTGAGCCTTGCATTCCG CCCATCAAACCACCCTGGCGGGGAAGAACCCCACGCCCCGGATCCGCTTCAACCCCACAT GCTCTTACTTCAAACTCTGAATCTTCCCCAGCTTATCCGTCTTGGGTCGCCCACGTTGCA GAAGCAGTTGCGGCGTGAGAGGAGCCATGGGTGGCCGAGGGCTCAACCGAACCCGCGCCT CCACGAAGTCCGGTCGCTAAGGCCCGCTGCCGGGGAGCCCAGGAGGTGGCGCACAACAAA CCCTTTGCGAGTCCGTTGCGACCGGAAGGAAGCAGAACGCCAGCCTTACGCCCCACCTCC TGCTTCTGCGATGACTACAACTCCCAGCGGCCCCTGCATCTCGCGCCTGC
1	EXON 1	136136154	136136294	-	0	141	GCTCTTAACTGATCGGAGGACGCGATGGCGGCGGCGGCTGAAGTTTCTCTTTTGCCGGAG TGCGGCTGTAAGGGCATCCGGACCTGTCTTATCTGCGAGAGACAACGCCACAGGGACCCG CCCTGGCAGATCTGCCTTCAG
	INTRON 1 - 2	136136295	136139337			3043	GTACGGACTAGGAAAAGAGTCATAG..........TCTGCCCCATCTCTGTCTTTTACAG
2	EXON 2	136139338	136139535	0	0	198	AAAAAATGCTGTTTCCTCTACTGCCCAGACACAGGCTGGGCCGCAGGGGCCGAGGGCTCT GACTTGGAGGGTTGGGCATTCCCCTTCCCAGGAGTGACACTGATACAGGACTTTGTGACC CCAGAGGAAGAAGCTGAGATGGTGCGTCTGATGGACTGCGACCCCTGGAAGCTCTCACAG TCTGGGAGGAAGAAGCAG
	INTRON 2 - 3	136139536	136140178			643	GTACGGTGGCCTGAGCTGAGCCGAG..........CTTCTCCTTCCTGTCTCCACTGCAG
3	EXON 3	136140179	136141612	0	-	1434	GACTATGGCCCTAAAGTTAATTTTCGGAAGCAGAAGCTGAAGATGGCAGGCTTCCAGGGA CTCCCTGGCTTTAGCCAGAAGGTAGTCCAGAGAATGGGCCTTTACCCGGGGCTGGAGGAC TTCCAGCCTGTGGAACAGTGCAATCTGGACTACAGCCCTGAGCGGGGCTCCGCCATCGAT CCCCACTTGGACGACGCCTGGCTGTGGGGCGAGCGGCTGGTGAGCCTCAACCTCCTGTCA GCCACAGTGGTGTCCATGTCTCCAGAGGCCCCTGGCAGCCTGCTTCTCTGCTCAGCCCCC TCCGTCAGACCTGATGCTTTTGAGGACAGCCTTGTGGCTCCTAGCAGGTCTGTCCCCTGC CAAGAGGTGGAGGTGGCCATCATGGTACCCCGCCGCTCCCTGCTGGTACTTACAGGGGCC GCGAGGCACCAGTGGACACACGCCATCCACCGCAGACACATCAAGGCCCGCCGTGTGTGC GCCACCTTCAGGGAGCTATCCAGTGAGTTCCTGCCTGGAGGGAAGCAGCAAGAACTGGGC CAAGAACTGCTGCAGGCTGCACTCTCGTTCCAGGGGAGACCGGTGTGATGCTTCCCAGGG CCCAGGAGCTGTCACTGGCCTGGCCAAAAGCTTGGCTCCAGCACAACCATCGGAGGAGCT AACACTGAGGTCTCCCCACAGCAGTAGATTCGTGGGGTTTTTTTGAGACAAGGTCTCATG TAGCCCAGGCTAGCCTCCAATTAATTGTGTAGCTAAGGATGACCTTGGACTCTTGCCTTT TCTACCTCCTCTTCCCAAGCTCTGGCTTGATTATTTTGTTTTGTTTCTCTTTTTGGGACA GGGTCTCCGGCCTAGACTGGCCTCAGACTCTGTGTTCAGCCAAGGATGACTTTGAACTCC GGATCCTCCTGCCTCTACCTCTTGAATGCTGGGATTGCCAGCGTGCACCATCATATGCAA TTTTTGTCTGTGCTGGGATGGCAGCAAGCGTTCTGCCAGCTGAGCTACCCCACCCCCCTA GCCTGTTGGGGGTTTTTGAGACAAGGCCTCACATGGGCTAGACTGGCCTGGAACTCCCCA TCCTCCTGCCTCAGCCTCCCAGTCGCTGAGGTGACAGCGTACTGGTGAGGTTTTAGGAGG AGCCATCTGACCCTTGACGTCATGAGCATCGTATGTCCTGCCCGGAGCTGGTTCTGCTGG GCCTGGGCTGCGGCCATTCCTCAGCTCACTGAGTGTCATATGTGGAGGGATTGAGTCTTT TAGAACTTCAGTACTTGGGACGAGTAAGGTGGCTCAGTAGCTAAAGGTGCTGCCACCAAG CCTGATGTTCAGTCTCTGCAATCCACGTGGTAAAAGGAGTGTCCCCTGATCTCCACACGC ACGTCACCCATTTTGATAAAATTCATAATAAAAGAAAAACCTTGGTCTCATGTG
	3' upstream sequence						AAATGAATTTCTCCTTTTCCCATCCCTGTGTGAGGTAGTTGTAGTTATTTTGTTTTGTTT TAAAACAGGGTCTCACTTTGTAGCCTTGGCTGTCTTGGAACTCGCTTTATAGACCAGGCT GGCCCTTAACTCATAAAGATCTCTACCTCTGCTGCTGAGTAAGTGCCGGGATTAAAGATA TGCACCAATCCACAGAGCCCAACTCTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTGAGA TAAGCTTCCCATTTGTAGTACAGGCTGGCCTCAAAATTTGACCAGTCAGGACCCAAGGAT TAAACTTAGTTTTAAAAATTACATTGACTTAGTTATTTAGCTATGGAAGCAGGCACAGCT CTGTGTATGGAGGACAGAAGACCATGCAGGCCAAGGTGGAAGGTGGAGTTGTGTGGCTGG CCTGCATGACAGCCTTGTACCTCCAGGAAAGGGTCACAGCCTCGGGGTTTGTGATACCAA GTTTTGGGAGGCTTGTGTTTCTGTGTGCAGATTGCAGACTTATGTGGGTGCAGTGCACTT GCTCTGTGCATGCATCAGGGGGCCAGCTGCAATCGCATGCACGTGGTATCCGTGAGGTCA GCGAACCATCGGAGGGAGTCCAGTTTCTGTCTTCCTCATGGTGGTTCTGGTGATTGGACT CCATTAGCCTCGGCAGCAAAGACCTTTCCAGATGGAGCCATGTCACTAGCCCCTCAGCTG TCATTGTTCGGGCGCCATGCATTGTGTGGGACAGGGTCTCTAGTTTGCCTGCACCTCTCC AGGCAGGCTGGGCTGGCTGGCACGGAGCACAGGAACCCACCTGTGTGTTCATCTCCAGCC CTGGAATCGAATCACACCTACCCCCAACCCAGCTCTGCGGGCTCAGGCGTTCCTGCATGC TGGCCAGCACCTGCTGACTGAGCAAAACTGTAGTGACAACTTTGGAATTTTGGGTTCCTA AGAAAACACAAATAAAAGAATCTGTTTTGGTTTTAATCCC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Alkbh4 (ENSMUSG00000039754)
Transcript ID	ENSMUST00000041100

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 301 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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