MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Palb2 (ENSMUSG00000044702)

Cross Reference

EMBL	AK028653, AK156701, BC055302, ...show all
Fantom	4732427B05, F830038L21
GO	GO:0000724, GO:0001701, GO:0001756, ...show all
goslim_goa	GO:0003674, GO:0003677, GO:0005575, ...show all
MGI_trans_name	Palb2-003
OTTP	OTTMUSP00000025886
OTTT	OTTMUST00000054271
protein_id	AAH55302.1, AAH66140.1, BAC26048.1, ...show all
Reactome	R-MMU-419524, R-MMU-73894
RefSeq_mRNA	NM_001289845.1

RefSeq_peptide	NP_001276774
UCSC	uc012fth.2
UniParc	UPI00001B3C81
Uniprot/SWISSPROT	Q3U0P1
Vega_transcript	OTTMUST00000054271, Palb2-003
Vega_translation	202430, OTTMUSP00000025886

Definition

protein_id:ENSMUSP00000063514
translation:

MEELSGKPLSYAEKEKLKEKLAFLKKEYSRTLARLQTETADRPACDNLNPGNLQLVSELK
NPSSSCSVDVSAMWWERAGAKEPCIVTACEDVVSLWKPLNSLQWEKVHTWHFTEVPVLQI
VPVPDVYNLICVALGSLEIREIRALLCSSGDDSEKQVLLKSGDIKAMLGLTKRRLVSSTG
TFCNQQIQIMTFADDGSSKDEQLLMPPDETVLTFAEVQGTQEALLGTTTVNSIVIWNLKT
GQLLKKMHIDDSYQASVCHGAYSEKGLLFVVVSQPCAKESQALGSPVFQLLVINPKTAQS
VGVLLCSLPQGQAGRFLEGDVKDHVAAAVLTSGTIAIWDLLLGHCTALLPPVSDQSWSLV
KWSGTDSHLLAGQKDGNIFIYRYF

Chromosome

Length
Position(start - end)

25248
122107518 - 122132767

Orient to Chromosome

minus

Link

Location : (7:122107518-122132767)
/

Detail Map

name	Palb2 (ENSMUSG00000044702)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Palb2 note : partner and localizer of BRCA2 [Source:MGI Symbol;Acc:MGI:3040695]

name	Gm16326 (ENSMUSG00000089631)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm16326 note : predicted gene 16326 [Source:MGI Symbol;Acc:MGI:3840124]

name	Dctn5 (ENSMUSG00000030868)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Dctn5 note : dynactin 5 [Source:MGI Symbol;Acc:MGI:1891689]

name	Palb2 (ENSMUSG00000044702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000098068

name	Palb2 (ENSMUSG00000044702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000106469

name	Palb2 (ENSMUSG00000044702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000063587

name	Palb2 (ENSMUSG00000044702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000131657

name	Palb2 (ENSMUSG00000044702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000106468

name	Palb2 (ENSMUSG00000044702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000142952

name	Palb2 (ENSMUSG00000044702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000130149

name	Dctn5 (ENSMUSG00000030868)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000033156

name	Dctn5 (ENSMUSG00000030868)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000176193

name	Palb2 (ENSMUSG00000044702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS40117.1 Uniprot/SWISSPROT:Q3U0P1 RefSeq_peptide:NP_001074707 RefSeq_mRNA:NM_001081238.2 Vega_transcript:OTTMUST00000054269 Vega_transcript:Palb2-001 UCSC:uc009joj.2 Fantom:4732427B05 Fantom:F830038L21 EMBL:AK028653 EMBL:AK156701 EMBL:BC055302 EMBL:BC066140 GO:GO:0000724 GO:GO:0000724 GO:GO:0001701 GO:GO:0001756 GO:GO:0001833 GO:GO:0003677 GO:GO:0003677 GO:GO:0005654 GO:GO:0005654 GO:GO:0007498 GO:GO:0009887 GO:GO:0031052 GO:GO:0035264 GO:GO:0036342 GO:GO:0043066 GO:GO:0048568 MGI_trans_name:Palb2-001 Vega_translation:202431 Vega_translation:OTTMUSP00000025884 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0008150 goslim_goa:GO:0008283 goslim_goa:GO:0009790 goslim_goa:GO:0034641 goslim_goa:GO:0040007 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0051276 protein_id:AAH55302.1 protein_id:AAH66140.1 protein_id:BAC26048.1 protein_id:BAE33811.1 OTTP:OTTMUSP00000025884 OTTT:OTTMUST00000054269 Reactome:R-MMU-419524 Reactome:R-MMU-73894 UniParc:UPI000047A107
definition	note : transcript_id=ENSMUST00000098068 protein_id : ENSMUSP00000095675 translation : MEELSGKPLSYAEKEKLKEKLAFLKKEYSRTLARLQRAKRAEKAKNSKKAIEDGVPQPEASSQLSHSESINKGFPCDTLQSNHLDEETGENISQILDVEPQSFNCKQGKEVLHTPRAGDIQGQLLHSTSSPDGKKEQNTLPGTTKTPWEKSSVSQEKEDYFDTNSLALLGKHRKGQESISRKNSRTPVSEKTHLLSLRSQIPDPPALVTGIGEGILIPPSGKSERGIDTLVRGNTVSAEAAVPSCTASNSNHSQHLEHTPPKSGCKITTQGPASSTNLVAQDQKMTIFTVNSVVYKAVRAHGQLPGSPNSCSVNDLTHSNLPANSTPNSKSLKSPSNTVDERNEPLQEDEILGPSKNFNLAAVSPPSTESQIHSCTMLEGLLFPAEYYVRTTRRMSDCQRKIALEAVIQSHLGVKKKELKKKTKATKAVVLSSEDTDQSESGMLDTSTGQSSSGSLSQKLLSPAEVSSPPGPAGKATTPPPGRGHRGKRKSARTSTLGHCQLLFPPCAALAVNRSKGKFTKHKCQNRGVVIHDFELPDEDFGLLKLEKLKSCSEKLIESPDSKNCGERLPREGNHAALEELQRDSETEGLEEELTVPPGEAYRPGPTLRRQPGSKDLSSSIVLFTPADTAAPNDSGRPPPSLCSPAFPILGMTPALGSQAAGETLSTEAAQPCSTSQPPLLGDTNSLVNNSKQCNSSACSPKPDTNLQASGRQGQPACDSDSGPQATPLPVESFTFRENQLCGNACLELHEHSTEQTETADRPACDNLNPGNLQLVSELKNPSSSCSVDVSAMWWERAGAKEPCIVTACEDVVSLWKPLNSLQWEKVHTWHFTEVPVLQIVPVPDVYNLICVALGSLEIREIRALLCSSGDDSEKQVLLKSGDIKAMLGLTKRRLVSSTGTFCNQQIQIMTFADDGSSKDEQLLMPPDETVLTFAEVQGTQEALLGTTTVNSIVIWNLKTGQLLKKMHIDDSYQASVCHGAYSEKGLLFVVVSQPCAKESQALGSPVFQLLVINPKTAQSVGVLLCSLPQGQAGRFLEGDVKDHVAAAVLTSGTIAIWDLLLGHCTALLPPVSDQSWSLVKWSGTDSHLLAGQKDGNIFIYRYF

name	Palb2 (ENSMUSG00000044702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS72035.1 Uniprot/SWISSPROT:Q3U0P1 RefSeq_peptide:NP_001276773 RefSeq_mRNA:NM_001289844.1 RefSeq_mRNA_predicted:XM_006507704 Vega_transcript:OTTMUST00000054270 Vega_transcript:Palb2-002 UCSC:uc012ftg.2 Fantom:4732427B05 Fantom:F830038L21 EMBL:AK028653 EMBL:AK156701 EMBL:BC055302 EMBL:BC066140 GO:GO:0000724 GO:GO:0001701 GO:GO:0001756 GO:GO:0001833 GO:GO:0003677 GO:GO:0005654 GO:GO:0007498 GO:GO:0009887 GO:GO:0031052 GO:GO:0035264 GO:GO:0036342 GO:GO:0043066 GO:GO:0048568 MGI_trans_name:Palb2-002 Vega_translation:202429 Vega_translation:OTTMUSP00000025885 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0008150 goslim_goa:GO:0008283 goslim_goa:GO:0009790 goslim_goa:GO:0034641 goslim_goa:GO:0040007 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0051276 protein_id:AAH55302.1 protein_id:AAH66140.1 protein_id:BAC26048.1 protein_id:BAE33811.1 OTTP:OTTMUSP00000025885 OTTT:OTTMUST00000054270 Reactome:R-MMU-419524 Reactome:R-MMU-73894 UniParc:UPI000023C816
definition	note : transcript_id=ENSMUST00000106469 protein_id : ENSMUSP00000102077 translation : MEELSGKPLSYAEKEKLKEKLAFLKKEYSRTLARLQRAKRAEKAKNSKKAIEDGVPQPEASSQLSHSESINKGFPCDTLQSNHLDEETGENISQILDVEPQSFNCKQGKEVLHTPRAGDIQGQLLHSTSSPDGKKEQNTLPGTTKTPWEKSSVSQEKEDYFDTNSLALLDFELPDEDFGLLKLEKLKSCSEKLIESPDSKNCGERLPREGNHAALEELQRDSETEGLEEELTVPPGEAYRPGPTLRRQPGSKDLSSSIVLFTPADTAAPNDSGRPPPSLCSPAFPILGMTPALGSQAAGETLSTEAAQPCSTSQPPLLGDTNSLVNNSKQCNSSACSPKPDTNLQASGRQGQPACDSDSGPQATPLPVESFTFRENQLCGNACLELHEHSTEQTETADRPACDNLNPGNLQLVSELKNPSSSCSVDVSAMWWERAGAKEPCIVTACEDVVSLWKPLNSLQWEKVHTWHFTEVPVLQIVPVPDVYNLICVALGSLEIREIRALLCSSGDDSEKQVLLKSGDIKAMLGLTKRRLVSSTGTFCNQQIQIMTFADDGSSKDEQLLMPPDETVLTFAEVQGTQEALLGTTTVNSIVIWNLKTGQLLKKMHIDDSYQASVCHGAYSEKGLLFVVVSQPCAKESQALGSPVFQLLVINPKTAQSVGVLLCSLPQGQAGRFLEGDVKDHVAAAVLTSGTIAIWDLLLGHCTALLPPVSDQSWSLVKWSGTDSHLLAGQKDGNIFIYRYF

name	Palb2 (ENSMUSG00000044702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q3U0P1 RefSeq_peptide:NP_001276774 RefSeq_mRNA:NM_001289845.1 Vega_transcript:OTTMUST00000054271 Vega_transcript:Palb2-003 UCSC:uc012fth.2 Fantom:4732427B05 Fantom:F830038L21 EMBL:AK028653 EMBL:AK156701 EMBL:BC055302 EMBL:BC066140 GO:GO:0000724 GO:GO:0001701 GO:GO:0001756 GO:GO:0001833 GO:GO:0003677 GO:GO:0005654 GO:GO:0007498 GO:GO:0009887 GO:GO:0031052 GO:GO:0035264 GO:GO:0036342 GO:GO:0043066 GO:GO:0048568 MGI_trans_name:Palb2-003 Vega_translation:202430 Vega_translation:OTTMUSP00000025886 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0008150 goslim_goa:GO:0008283 goslim_goa:GO:0009790 goslim_goa:GO:0034641 goslim_goa:GO:0040007 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0051276 protein_id:AAH55302.1 protein_id:AAH66140.1 protein_id:BAC26048.1 protein_id:BAE33811.1 OTTP:OTTMUSP00000025886 OTTT:OTTMUST00000054271 Reactome:R-MMU-419524 Reactome:R-MMU-73894 UniParc:UPI00001B3C81
definition	note : transcript_id=ENSMUST00000063587 protein_id : ENSMUSP00000063514 translation : MEELSGKPLSYAEKEKLKEKLAFLKKEYSRTLARLQTETADRPACDNLNPGNLQLVSELKNPSSSCSVDVSAMWWERAGAKEPCIVTACEDVVSLWKPLNSLQWEKVHTWHFTEVPVLQIVPVPDVYNLICVALGSLEIREIRALLCSSGDDSEKQVLLKSGDIKAMLGLTKRRLVSSTGTFCNQQIQIMTFADDGSSKDEQLLMPPDETVLTFAEVQGTQEALLGTTTVNSIVIWNLKTGQLLKKMHIDDSYQASVCHGAYSEKGLLFVVVSQPCAKESQALGSPVFQLLVINPKTAQSVGVLLCSLPQGQAGRFLEGDVKDHVAAAVLTSGTIAIWDLLLGHCTALLPPVSDQSWSLVKWSGTDSHLLAGQKDGNIFIYRYF

name	Palb2 (ENSMUSG00000044702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084850 Vega_transcript:Palb2-007 Uniprot/SPTREMBL:F6VTV6 GO:GO:0000724 GO:GO:0001701 GO:GO:0001756 GO:GO:0001833 GO:GO:0003677 GO:GO:0005654 GO:GO:0007498 GO:GO:0009887 GO:GO:0031052 GO:GO:0035264 GO:GO:0036342 GO:GO:0043066 GO:GO:0048568 MGI_trans_name:Palb2-007 Vega_translation:202432 Vega_translation:OTTMUSP00000045776 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0008150 goslim_goa:GO:0008283 goslim_goa:GO:0009790 goslim_goa:GO:0034641 goslim_goa:GO:0040007 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0051276 OTTP:OTTMUSP00000045776 OTTT:OTTMUST00000084850 UniParc:UPI000246768F
definition	note : transcript_id=ENSMUST00000131657 protein_id : ENSMUSP00000118059 translation : CNSSACSPKPDTNLQASD

name	Palb2 (ENSMUSG00000044702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001276771 RefSeq_peptide:NP_001276772.1 RefSeq_mRNA:NM_001289842.1 RefSeq_mRNA:NM_001289843.1 Vega_transcript:OTTMUST00000054272 Vega_transcript:Palb2-004 Uniprot/SPTREMBL:D3YVU6 UCSC:uc009jok.1 EMBL:AC124379 GO:GO:0000724 GO:GO:0001701 GO:GO:0001756 GO:GO:0001833 GO:GO:0003677 GO:GO:0005654 GO:GO:0007498 GO:GO:0009887 GO:GO:0031052 GO:GO:0035264 GO:GO:0036342 GO:GO:0043066 GO:GO:0048568 MGI_trans_name:Palb2-004 Vega_translation:202434 Vega_translation:OTTMUSP00000025887 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0008150 goslim_goa:GO:0008283 goslim_goa:GO:0009790 goslim_goa:GO:0034641 goslim_goa:GO:0040007 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0051276 OTTP:OTTMUSP00000025887 OTTT:OTTMUST00000054272 UniParc:UPI00006059FA
definition	note : transcript_id=ENSMUST00000106468 protein_id : ENSMUSP00000102076 translation : MEELSGKPLSYAEKEKLKEKLAFLKKEYSRTLARLQRAKRAEKAKNSKKAIEDGVPQPEASSQLSHSESINKGFPCDTLQSNHLDEETGENISQILDVEPQSFNCKQGKEVLHTPRAGDIQGQLLHSTSSPDGKKEQNTLPGTTKTPWEKSSVSQEKEDYFDTNSLALLGKHRKGQESISRKNSRTPVSEKTHLLSLRSQIPDPPALVTGIGEGILIPPSGKSERGIDTLVRGNTVSAEAAVPSCTASNSNHSQHLEHTPPKSGCKITTQGPASSTNLVAQDQKMTIFTVNSVVYKAVRAHGQLPGSPNSCSVNDLTHSNLPANSTPNSKSLKSPSNTVDERNEPLQEDEILGPSKNFNLAAVSPPSTESQIHSCTMLEGLLFPAEYYVRTTRRMSDCQRKIALEAVIQSHLGVKKKELKKKTKATKAVVLSSEDTDQSESGMLDTSTGQSSSGSLSQKLLSPAEVSSPPGPAGKATTPPPGRGHRGKRKSARTSTLGHCQLLFPPCAALAVNRSKGKFTKHKCQNRGVVIHDFELPDEDFGLLKLEKLKSCSEKLIESPDSKNCGERLPREGNHAALEELQRDSETEGLEEELTVPPGEAYRPGPTLRRQPGSKDLSSSIVLFTPADTAAPNDSGRPPPSLCSPAFPILGMTPALGSQAAGETLSTEAAQPCSTSQPPLLGDTNSLVNNSKQCNSSACSPKPDTNLQASGRQGQPACDSDSGPQATPLPVESFTFRENQLCGNACLELHEHSTEQTETADRPACDNLNPGNLQLVSELKNPSSSCSVDVSAMWWERAGAKEPCIVTACEDVVSLWKPLNSLQWEKVHTWHFTEVPVLQIVPVPDVYNLICVALGSLEIREIRALLCSSGDDSEKQVLLKSGDIKAMLGLTKRRLVSSTGTFCNQQIQIMTFADDGSSKDEQLLMPPDETVLTFAEVQGTQEALLGTTTVNSIVIWNLKTGQLLKKMHIDDSYQASVCHGAYSEKVPCSPGWPAPVYVLSKMTLNLRFPASTSPVLGFLAQVRLSYNPID

name	Palb2 (ENSMUSG00000044702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000054273 Vega_transcript:Palb2-005 Uniprot/SPTREMBL:D6RDD1 UCSC:uc009jok.1 EMBL:AC124379 GO:GO:0000724 GO:GO:0001701 GO:GO:0001756 GO:GO:0001833 GO:GO:0003677 GO:GO:0005654 GO:GO:0007498 GO:GO:0009887 GO:GO:0031052 GO:GO:0035264 GO:GO:0036342 GO:GO:0043066 GO:GO:0048568 MGI_trans_name:Palb2-005 Vega_translation:202433 Vega_translation:OTTMUSP00000030962 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0008150 goslim_goa:GO:0008283 goslim_goa:GO:0009790 goslim_goa:GO:0034641 goslim_goa:GO:0040007 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0051276 OTTP:OTTMUSP00000030962 OTTT:OTTMUST00000054273 UniParc:UPI00006059F8
definition	note : transcript_id=ENSMUST00000142952 protein_id : ENSMUSP00000123041 translation : MEELSGKPLSYAEKEKLKEKLAFLKKEYSRTLARLQNL

name	Palb2 (ENSMUSG00000044702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q3U0P1 Vega_transcript:OTTMUST00000054274 Vega_transcript:Palb2-006 UCSC:uc009jom.1 Fantom:4732427B05 Fantom:F830038L21 EMBL:AK028653 EMBL:AK156701 EMBL:BC055302 EMBL:BC066140 GO:GO:0000724 GO:GO:0001701 GO:GO:0001756 GO:GO:0001833 GO:GO:0003677 GO:GO:0005654 GO:GO:0007498 GO:GO:0009887 GO:GO:0031052 GO:GO:0035264 GO:GO:0036342 GO:GO:0043066 GO:GO:0048568 MGI_trans_name:Palb2-006 Vega_translation:202435 Vega_translation:OTTMUSP00000045934 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0006259 goslim_goa:GO:0006950 goslim_goa:GO:0008150 goslim_goa:GO:0008283 goslim_goa:GO:0009790 goslim_goa:GO:0034641 goslim_goa:GO:0040007 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0051276 protein_id:AAH55302.1 protein_id:AAH66140.1 protein_id:BAC26048.1 protein_id:BAE33811.1 OTTP:OTTMUSP00000045934 OTTT:OTTMUST00000054274 Reactome:R-MMU-419524 Reactome:R-MMU-73894 UniParc:UPI0000027367
definition	note : transcript_id=ENSMUST00000130149 protein_id : ENSMUSP00000121994 translation : MEELSGKPLSYAEKEKLKEKLAFLKKEYSRTLARLQRAKRAEKAKNSKKAIEDGVPQPEASSQLSHSESINKGFPCDTLQSNHLDEETGENISQILDVEPQSFNCKQGKEVLHTPRAGDIQGQLLHSTSSPDGKKEQNTLPGTTKTPWEKSSVSQEKEDYFDTNSLALLGKHRKGQESISRKNSRTPVSEKTHLLSLRSQIPDPPALVTGIGEGILIPPSGKSERGIDTLVRGNTVSAEAAVPSCTASNSNHSQHLEHTPPKSGCKITTQGPASSTNLVAQDQKMTIFTVNSVVYKAVRAHGQLPGSPNSCSVNDLTHSNLPANSTPNSKSLKSPSNTVDERNEPLQEDEILGPSKNFNLAAVSPPSTESQIHSCTMLEGLLFPAEYYVRTTRRMSDCQRKIALEAVIQSHLGVKKKELKKKTKATKAVVLSSEDTDQSESGMLDTSTGQSSSGSLSQKLLSPAEVSSPPGPAGKATTPPPGRGHRGKRKSARTSTLGHCQLLFPPCAALAVNRSKGKFTKHKCQNRGVVIHGKSRRRVRLRLM

name	Dctn5 (ENSMUSG00000030868) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS21811.1 Uniprot/SWISSPROT:Q9QZB9 RefSeq_peptide:NP_067621 RefSeq_mRNA:NM_021608.3 Vega_transcript:Dctn5-001 Vega_transcript:OTTMUST00000054251 UCSC:uc009jon.2 Fantom:2310081F19 Fantom:2810020F19 Fantom:4930427E12 Fantom:D230024C15 Fantom:I830026K10 Fantom:I830041H04 Fantom:I920070C15 EMBL:AF190795 EMBL:AK010238 EMBL:AK051957 EMBL:AK076100 EMBL:AK076738 EMBL:AK151193 EMBL:AK151876 EMBL:AK168983 EMBL:BC005671 EMBL:BC010834 GO:GO:0000777 GO:GO:0003674 GO:GO:0005515 GO:GO:0005737 GO:GO:0005813 GO:GO:0005813 GO:GO:0008150 MGI_trans_name:Dctn5-001 Vega_translation:202436 Vega_translation:OTTMUSP00000025873 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005694 goslim_goa:GO:0005737 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAF05615.1 protein_id:AAH05671.1 protein_id:AAH10834.1 protein_id:BAB26789.1 protein_id:BAC34820.1 protein_id:BAC36183.1 protein_id:BAC36460.1 protein_id:BAE30190.1 protein_id:BAE30763.1 protein_id:BAE40783.1 OTTP:OTTMUSP00000025873 OTTT:OTTMUST00000054251 Reactome:R-MMU-1280218 Reactome:R-MMU-168256 Reactome:R-MMU-2132295 UniParc:UPI0000023610
definition	note : transcript_id=ENSMUST00000033156 protein_id : ENSMUSP00000033156 translation : MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIIMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCKILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV

name	Dctn5 (ENSMUSG00000030868) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Dctn5-003 Vega_transcript:OTTMUST00000111073 Uniprot/SPTREMBL:H3BJ75 EMBL:AC124379 GO:GO:0003674 GO:GO:0005813 GO:GO:0008150 MGI_trans_name:Dctn5-003 Vega_translation:202437 Vega_translation:OTTMUSP00000062077 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000062077 OTTT:OTTMUST00000111073 UniParc:UPI0002467690
definition	note : transcript_id=ENSMUST00000176193 protein_id : ENSMUSP00000134876 translation : MELGELLYNKSEYIETVRVWRPCRRWQSRDPRGLDGRPSRPGCTGSRSLSPFLG

name
type	misc_feature
link
xref
definition	note : contig AC124379.3 1..132973(-1)

name	Palb2 (ENSMUSG00000044702)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084920 Vega_transcript:OTTMUST00000084920 MGI_trans_name:Palb2-008 OTTT:OTTMUST00000084920
definition	note : retained_intron note : transcript_id=ENSMUST00000154508

name	Gm16326 (ENSMUSG00000089631)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000084835 Vega_transcript:OTTMUST00000084835 Clone_based_vega_transcript:AC124379.6-001 MGI_trans_name:Gm16326-001 OTTT:OTTMUST00000084835
definition	note : processed_pseudogene note : transcript_id=ENSMUST00000162843

name	Dctn5 (ENSMUSG00000030868)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000054252 Vega_transcript:OTTMUST00000054252 MGI_trans_name:Dctn5-002 OTTT:OTTMUST00000054252
definition	note : retained_intron note : transcript_id=ENSMUST00000123602

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Palb2 (ENSMUSG00000044702)
Transcript ID	ENSMUST00000063587

Reports
substitution
cSNPs	3
Insertion	21
Deletion	24
SNPs	+1kb 122132931(c.-164C>G), 122133004(c.-237G>C), 122133005(c.-238A>G), 122133020(c.-253A>G), 122133026(c.-259C>T), 122133085(c.-318C>A), 122133088(c.-321A>T), 122133129(c.-362T>G), 122133172(c.-405G>A), 122133251(c.-484G>A), 122133351(c.-584G>T), 122133432(c.-665G>C), 122133550(c.-783T>C), 122133656(c.-889A>G), 122133860(c.-1093A>G), 122133879(c.-1112C>T), 122133914(c.-1147C>T), 122133985(c.-1218G>A), 122134054(c.-1287T>G), 122134437(c.-1670A>G), 122134438(c.-1671T>C), 122134532(c.-1765G>A), 122134653(c.-1886T>C), 122134799(c.-2032A>C), 122134808(c.-2041T>C), 122134900(c.-2133T>C), 122134948(c.-2181A>T), 122134958(c.-2191T>C), 122135120(c.-2353G>A), 122135238(c.-2471T>A), 122135337(c.-2570T>C), 122135361(c.-2594G>A), 122135368(c.-2601G>C), 122135409(c.-2642T>C), 122135420(c.-2653C>T), 122135598(c.-2831T>A), 122135604(c.-2837T>A), 122135672(c.-2905C>T), 122135693(c.-2926A>G), 122135694(c.-2927C>T), 122135741(c.-2974C>T), 122135764(c.-2997T>C), 122135779(c.-3012C>T), 122135814(c.-3047G>C), 122135907(c.-3140T>A), 122135909(c.-3142G>T), 122136100(c.-3333T>C), 122136185(c.-3418G>A), 122136216(c.-3449A>G), 122136244(c.-3477C>T), 122136325(c.-3558C>T), 122136657(c.-3890T>C), 122136729(c.-3962G>T), 122136736(c.-3969A>T), 122136759(c.-3992A>T), 5'UTR 122132784(c.-17G>A), 122132785(c.-18C>T), 122132846(c.-79T>C), 122132866(c.-99C>T), 122132874(c.-107C>T), CDS 122107527(c.1146A>C), 122114348(c.551A>G), 122114359(c.540G>A), 3'UTR 122107303(c.215C>T), 122107377(c.141T>G), 122107386(c.132A>G), INTRON 122107758(c.945-30T>A), 122107820(c.945-92G>A), 122108106(c.945-378G>A), 122108140(c.945-412C>T), 122108654(c.945-926T>A), 122108692(c.945-964G>A), 122108693(c.945-965A>G), 122108711(c.945-983T>C), 122108848(c.945-1120C>A), 122108947(c.945-1219C>T), 122109015(c.945-1287G>C), 122109644(c.944+1038G>A), 122109711(c.944+971G>C), 122109717(c.944+965A>C), 122109728(c.944+954T>C), 122109745(c.944+937G>A), 122109782(c.944+900G>A), 122110032(c.944+650G>A), 122110237(c.944+445G>A), 122110990(c.796-160A>G), 122110999(c.796-169A>G), 122111115(c.796-285T>A), 122111584(c.795+361T>A), 122111903(c.795+42C>A), 122112397(c.708-365A>T), 122112698(c.707+552A>C), 122112716(c.707+534G>A), 122112724(c.707+526C>A), 122112727(c.707+523G>A), 122112792(c.707+458G>A), 122112866(c.707+384A>T), 122113163(c.707+87A>G), 122113168(c.707+82A>T), 122113200(c.707+50A>G), 122113493(c.591-127A>G), 122113878(c.590+431T>C), 122113901(c.590+408T>C), 122114016(c.590+293T>C), 122114194(c.590+115T>A), 122114281(c.590+28C>T), 122114284(c.590+25C>A), 122114542(c.429-72A>G), 122114656(c.429-186A>C), 122114657(c.429-187T>A), 122115084(c.429-614A>G), 122115180(c.429-710G>T), 122115185(c.429-715A>G), 122115461(c.429-991C>T), 122116048(c.428+1222G>A), 122116103(c.428+1167C>T), 122116150(c.428+1120A>G), 122116437(c.428+833C>T), 122116726(c.428+544A>T), 122117042(c.428+228C>G), 122117074(c.428+196G>A), 122117606(c.343-251C>T), 122117739(c.343-384A>C), 122117749(c.343-394G>A), 122118036(c.343-681T>C), 122119625(c.342+1429C>T), 122120354(c.342+700C>A), 122120356(c.342+698G>A), 122120476(c.342+578G>A), 122120502(c.342+552C>T), 122120563(c.342+491G>A), 122120593(c.342+461A>G), 122120690(c.342+364C>T), 122120693(c.342+361C>T), 122120705(c.342+349C>T), 122120761(c.342+293T>C), 122120769(c.342+285A>C), 122120919(c.342+135A>G), 122121008(c.342+46G>A), 122121506(c.181-291G>T), 122121856(c.181-641C>T), 122121972(c.181-757G>T), 122121981(c.181-766G>A), 122122029(c.181-814T>C), 122122418(c.181-1203A>G), 122122680(c.180+957A>C), 122122870(c.180+767A>G), 122122902(c.180+735A>G), 122123052(c.180+585T>C), 122123105(c.180+532G>T), 122123190(c.180+447T>C), 122123238(c.180+399G>A), 122123256(c.180+381A>G), 122123297(c.180+340T>C), 122123516(c.180+121A>C), 122123748(c.109-40T>C), 122123750(c.109-42G>A), 122123958(c.109-250G>A), 122123996(c.109-288G>A), 122124052(c.109-344T>C), 122124446(c.109-738G>A), 122124681(c.109-973A>C), 122124821(c.109-1113G>A), 122124951(c.109-1243C>A), 122125327(c.109-1619G>T), 122125331(c.109-1623C>T), 122125409(c.109-1701C>T), 122125471(c.109-1763T>C), 122125623(c.109-1915G>A), 122125734(c.109-2026C>A), 122126084(c.109-2376A>G), 122126538(c.109-2830G>A), 122126600(c.109-2892C>A), 122126929(c.108+2745C>T), 122126982(c.108+2692T>A), 122127151(c.108+2523C>T), 122127224(c.108+2450A>G), 122127367(c.108+2307A>G), 122127567(c.108+2107T>C), 122127722(c.108+1952C>T), 122127925(c.108+1749G>A), 122128046(c.108+1628G>A), 122128053(c.108+1621G>A), 122128055(c.108+1619C>G), 122128082(c.108+1592G>A), 122128103(c.108+1571G>T), 122128114(c.108+1560T>A), 122128118(c.108+1556A>G), 122128148(c.108+1526G>T), 122128242(c.108+1432A>G), 122128276(c.108+1398C>T), 122128321(c.108+1353A>C), 122128459(c.108+1215T>A), 122128945(c.108+729T>C), 122128975(c.108+699C>A), 122128977(c.108+697G>A), 122129593(c.108+81C>T), 122129868(c.49-135C>G), 122129946(c.49-213A>G), 122130054(c.49-321T>C), 122130069(c.49-336C>T), 122130184(c.49-451A>G), 122130206(c.49-473G>T), 122130278(c.49-545G>A), 122130287(c.49-554A>T), 122130363(c.49-630A>T), 122130375(c.49-642A>G), 122130402(c.49-669C>T), 122130588(c.49-855A>G), 122130589(c.49-856C>T), 122130610(c.49-877A>G), 122130649(c.49-916G>A), 122130666(c.49-933C>A), 122130715(c.49-982G>A), 122130749(c.49-1016A>C), 122130801(c.49-1068G>C), 122130963(c.49-1230G>A), 122130965(c.49-1232A>G), 122130973(c.49-1240A>G), 122130982(c.49-1249T>G), 122130983(c.49-1250T>G), 122130987(c.49-1254T>C), 122131143(c.49-1410T>C), 122131300(c.48+1420T>G), 122131416(c.48+1304G>A), 122131461(c.48+1259T>A), 122131618(c.48+1102G>A), 122131663(c.48+1057A>G), 122131666(c.48+1054A>C), 122131793(c.48+927G>A), 122131954(c.48+766G>C), 122131994(c.48+726T>G), 122132001(c.48+719G>A), 122132180(c.48+540A>T), 122132367(c.48+353A>G), 122132555(c.48+165T>A), 122132570(c.48+150G>A), 122132640(c.48+80T>A), -1kb 122102899(c.4619G>A), 122103167(c.4351G>A), 122103380(c.4138A>G), 122103408(c.4110T>A), 122103462(c.4056A>G), 122103466(c.4052T>C), 122103469(c.4049A>G), 122105219(c.2299C>T), 122105271(c.2247T>C), 122105282(c.2236T>G), 122105611(c.1907A>T), 122105622(c.1896G>A), 122105994(c.1524T>C), 122105995(c.1523C>T), 122106021(c.1497G>A), 122106052(c.1466G>A), 122106109(c.1409G>A), 122106155(c.1363A>G), 122106156(c.1362C>G), 122106860(c.658A>G), 122107030(c.488C>T), 122107255(c.*263G>T),
Insertions	+1kb 122134136 (c.-1370dupA), 122134360 (c.-1594dupA), 122136008 (c.-3242_-3241insAGATAGCT), 5'UTR CDS 3'UTR INTRON 122107964 (c.945-237dupT), 122109630 (c.944+1051_944+1052insGG), 122112768 (c.707+481dupC), 122114217 (c.590+89_590+91dupTCT), 122118614 (c.343-1260_343-1259insA), 122120839 (c.342+214_342+215insATGC), 122121824 (c.181-610_181-609insAGAT), 122123404 (c.180+232_180+233insG), 122125430 (c.109-1723_109-1722insTTTA), 122130379 (c.49-648_49-647dupAA), 122130728 (c.49-996dupG), 122131879 (c.48+840_48+841insTGT), 122132003 (c.48+716_48+717insAG), -1kb 122102933 (c.4584_4585insGTT), 122103061 (c.4456_4457insTTG), 122105658 (c.1859_1860insATTA), 122106425 (c.1092_1093insTG), 122107090 (c.427_428insAAAAACAAAAAAC),
Deletions	+1kb 122133560 (c.-794delA), 122133898 (c.-1133_-1132delGG), 122134619 (c.-1853delT), 122137084 (c.-4319_-4318delTT), 5'UTR CDS 3'UTR 122107464 (c.53delT), INTRON 122111299 (c.796-477_796-470delGTTTGTTT), 122115987 (c.428+1282delA), 122115990 (c.428+1278_428+1279delAA), 122116312 (c.428+956_428+957delAC), 122117891 (c.343-537delC), 122118485 (c.343-1138_343-1131delATTGGATT), 122122452 (c.180+1183_180+1184delTA), 122122962 (c.180+674delT), 122123176 (c.180+460delA), 122124027 (c.109-321_109-320delCA), 122125414 (c.109-1707delC), 122125538 (c.109-1833_109-1831delCTC), 122129343 (c.108+330delA), 122130233 (c.49-502_49-501delTG), 122130272 (c.49-540delA), -1kb 122102259 (c.5256_5258delTTA), 122102543 (c.4972_4974delTTT), 122106854 (c.659_663delTGTGA), 122107235 (c.281_*282delTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	1
synonymous substitutions	122107527 (p.Arg382Arg), 122114359 (p.Gly180Gly),
non-synonymous substitutions	122114348 (p.Asn184Ser),
B6 transcript (ENSMUST00000063587)	MEELSGKPLSYAEKEKLKEKLAFLKKEYSRTLARLQTETADRPACDNLNPGNLQLVSELK NPSSSCSVDVSAMWWERAGAKEPCIVTACEDVVSLWKPLNSLQWEKVHTWHFTEVPVLQI VPVPDVYNLICVALGSLEIREIRALLCSSGDDSEKQVLLKSGDIKAMLGLTKRRLVSSTG TFCNQQIQIMTFADDGSSKDEQLLMPPDETVLTFAEVQGTQEALLGTTTVNSIVIWNLKT GQLLKKMHIDDSYQASVCHGAYSEKGLLFVVVSQPCAKESQALGSPVFQLLVINPKTAQS VGVLLCSLPQGQAGRFLEGDVKDHVAAAVLTSGTIAIWDLLLGHCTALLPPVSDQSWSLV KWSGTDSHLLAGQKDGNIFIYRYF*
MSMv4 transcript	MEELSGKPLSYAEKEKLKEKLAFLKKEYSRTLARLQTETADRPACDNLNPGNLQLVSELK NPSSSCSVDVSAMWWERAGAKEPCIVTACEDVVSLWKPLNSLQWEKVHTWHFTEVPVLQI VPVPDVYNLICVALGSLEIREIRALLCSSGDDSEKQVLLKSGDIKAMLGLTKRRLVSSTG TFCSQQIQIMTFADDGSSKDEQLLMPPDETVLTFAEVQGTQEALLGTTTVNSIVIWNLKT GQLLKKMHIDDSYQASVCHGAYSEKGLLFVVVSQPCAKESQALGSPVFQLLVINPKTAQS VGVLLCSLPQGQAGRFLEGDVKDHVAAAVLTSGTIAIWDLLLGHCTALLPPVSDQSWSLV KWSGTDSHLLAGQKDGNIFIYRYF*
homology	99.74 (385 / 385)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Palb2 (ENSMUSG00000044702)
Transcript ID	ENSMUST00000063587


..........GGGGGGGGGGGAAGGCTGTGGGCACGGCTCTGTGATAAGAGCACTCAGGG
ACTGAATCCAATCTATCAAAAGAGCAAGGGTAGATCAGGAACTGAGAGCTCAAGAAATGA
ATTCAGGATCGGTATCTAATGAGCGGTCTAATGACTGATGTGCATTCAGACCCCACTTCC
ATATTACGGTTTCATAGCCTTCAGTGAGGAAAATTACTTTTCCATGATCACAGACACACA
GAAAAAATAATGATAGTAACCCTGACGGGGGCAGTTTACATATGTTGTATTATGAGTTGA
CGAATAGAAACAATAACGTCTTAGCACGTAAGCAGACTGTGAAATATTATTTTTAAAAAG
GGCCCGGAGCCTGAAAATGTAATTTATATACAGAATGAATAGGCTGTACTGTGTATTCCT
CTGGAAGACATTATTTAACAGGAAACTCAGGCGTGTGTATATGCACACACATAGATATAT
ATGCATACAAACTCTCCCACATCCACACTTTCCTCCCCCGCTACACAGCACACCCACACA
CACGAGATGAAGGAGAAGAGAGCCTAATTCATGCATGCACCGACTAAATAACAATCAGAT
GAAACACGAAGCATCTCTAAGTCATCCAAGGAAGGGACTGAGGGAACGGGAACCAGTGCA
GCCGGGACAGGAGGGGCGACCGTCCAGTCCTCGAGGGTCCCGTGACTGCCAGCGGCGGCA
GGGTCGCCACACGCGCACCGTCTCGATATACTCCGACTTGTTGTACAGCAGTTCGCCCAA
CTCCATGGCTGCCCCCTCTCTGAACCTCAGGATCCTGTCAGTAGCTCAGGCTGAAGGTGA
TTCCAGCTACTTCCGGTTGATCGGCCACTTCCGCTATCCCCGCCCTGGACTCTTATTCGG
CTCTCCTCTAGTCAGCCCTGCTCGATCGCTCGGCAGTCTCCAGCTGCGCGTGCGCAGAGC
GAACAGAGGTTTTAATTGGCCAGAGCGGGTAGCGCGCGGAACCTGTGTGG
CTCGGCAGGAACATAGTGGGGGTGAACTAGGTCCCTGTTCTTCTCAGGGGTTCCTCTTGGCCCCAGGAAGCCCTGGCTGGGTCCCCGTGACCACAGGCCCGAGGCTGGAGACGGCTGCTCCTTGTATTCGGCTTCCAACCCGATGGAAGAGCTTTCCGGGAAGCCCCTCAGCTATGCGGAGAAGGAAAAG
GTGCCCGGGTTGCGGGAAGGGTGAC..........AGAATTGTTCTTGTTTTTCTTCCAG
TTGAAGGAAAAGCTAGCATTTTTGAAAAAGGAATACAGCAGGACACTTGCTCGACTTCAG
GTGAGTGAATCATAGTTGGTCAAAT..........CACAGTGTGACTTCTGTTTCCACAG
ACTGAAACTGCAGATCGCCCTGCTTGTGACAATCTAAACCCAGGAAACCTACAGTTGGTTTCAGAGTTAAAG
GTCAGCAAAATGTCCTGTTACTGTG..........AACATAATTTCTCTTTTGGGGTCAG
AATCCTTCCAGTTCCTGCTCTGTGGATGTGAGCGCCATGTGGTGGGAAAGAGCTGGTGCTAAGGAGCCATGTATCGTAACTGCTTGTGAAGATGTAGTTTCTCTTTGGAAACCCTTGAATTCTCTGCAGTGGGAGAAAGTTCATACCTGGCACTTCACAGAG
GTATGTCCAAGCCTCAGGGCTGAAA..........CTGAATATAACTTTCTTTTATGTAG
GTTCCAGTATTACAAATAGTTCCAGTGCCTGATGTTTACAATCTTATATGTGTAGCTTTGGGAAGTTTGGAAATCAGAGAAATCAG
GTACGCAGTTTCTGAGAACTCCACA..........CTCCTCGGATTTGTGTTTGGTGTAG
GGCGTTGCTGTGCTCTTCTGGTGATGACAGTGAAAAGCAAGTCCTCCTGAAATCTGGAGATATAAAAGCTATGCTTGGCCTGACAAAGCGGAGGCTAGTTAGTAGCACTGGAACCTTTTGCAGTCAACAAATACAAATCATGACATTTGCTGACGACGGAAG
GTAAGAAAAGCATTGATTGGTCTTA..........GATTTTCAGTACTGTTTTAATACAG
CAGCAAAGATGAACAGCTTTTGATGCCTCCTGATGAGACTGTACTGACTTTTGCTGAAGTCCAAGGGACGCAGGAAGCTCTGCTTGGTACTACCACTGTGAACAGCATTGTGATCTG
GTGAGCTTTCGCTCTATATGTGAGT..........TTTCTCACTTATTTTGATGTCTAAG
GAATTTAAAAACCGGCCAGCTCCTGAAGAAGATGCACATTGATGACTCCTACCAGGCTTCGGTCTGTCACGGAGCCTATTCTGAGAAG
GTGAGTACTGACCCAGGGCTGTGTG..........GGTGATTGTTTCTCTCCTGCAACAG
GGGCTCCTGTTTGTTGTTGTGAGTCAACCTTGTGCCAAAGAGAGCCAGGCCCTTGGAAGCCCTGTGTTCCAGCTGCTGGTGATTAACCCTAAGACGGCCCAGAGTGTGGGTGTTCTGCTGTGTTCCCTTCCTCAGGGGCAGGCTGGAAG
GTAAGTGTGTGTGTGCTGCTCTTCA..........GAATGTCTCTTCTTCTTTGTCTCAG
GTTCCTGGAAGGGGATGTGAAAGATCATGTCGCAGCAGCAGTCCTGACTTCTGGGACAATTGCCATTTGGGATTTGCTTCTGGGTCACTGCACGGCTCTCCTCCCACCTGTCTCTGACCAGAGTTGGTCTTTGGTTAAATGGTCGGGTACAGATTCTCACTTGCTAGCTGGACAAAAGGATGGAAATATATTTATATACCGCTACTTTTAAGAGGCAAATAGTTTGGAGGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTAAGAATACAATATCTGAATGACATTTAATGTGATTACTTGAATGTATTTCCCACACACTTAATTTTCTTCTGATAGTGGCTACTGACGGAACATTTGTTTATAGTTATTTTCAGGTTAATAGTTTTAAGTCATTCTTTGCACATTTGCTATTACAGCTGTATATAACCAGTGAATGTTAATAAATATTTATTTTGATACATTC
TGCTTGTCTTGTTCTATTTTTTTTTTCTAGTCTATTCACATCAATTCAAAAATAAGAAAT
ACTGCCGGGCATGGTGCCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGG
ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAAAAAAAAAAAAAACCTTATACAA
CAAGTCATAGCTCAGTGCAATAACTCAGTGGACAGATGAGTATTATTAGTGTTAGGATGT
ACGGATTGCTGCTGGGCTTCTGTCCTGAGAGGCATAAAGTGCTTCACAGGACCTTTAAGG
GTTAGTTCCAGTGCTGCTATGGACAAAGGTTGGGCAGTTAGTACATGCTGGAAAGCTCTG
TGGAGGGTGACAGCTGATTCTTGCAGGATAAACAGGTGAAGATGTGAGGGATTCCAGGCA
GGAAGTACAGACAACTGAATTGCAAAGACAACCAAAGCATGCCATAAGGAATGAGGTCCC
GGATCAGTCCAGGTAGCCAGGGGTCTTGTGTAAACTTCATTGTGCAAGGAAAGATGAGCG
ACTGAGCAGTAAGCAGATCAGGCTGTACTCTGGCTCCAGAGTGAGCAAAGGCTCTGTGAA
GACTGAGAATAGAGGCAGGCAGATGGGCTTGGAAAGTGATGGTATCAGTAATTGTTAAAA
GTTCTCAGAAATCACCCAAAATGGGAAGGGTAGCAGGGTGGAGGGAGGGTATGGGGGGCT
TCCAAGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAATTGAAGAAAAAA
AAAAGAAATCACCCAAAAAGAATGCGTAATAGGTAACTGGATATAGAACTGTGGAGTCAG
ATTCAAATGGGAATTAACTCCTCTGGAACACACTGGTTCTGAAAACTTGAAAGTTTAAAG
TCAAGGGTGGATTAAAGGTACCACTCTAAGACTGATGTTTAGATGATGAGGGAGACTGAA
TGTATTTATATATTTATTTCAGATACAGTGCAAACTGTCT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GGGGGGGGGGGAAGGCTGTGGGCACGGCTCTGTGATAAGAGCACTCAGGG ACTGAATCCAATCTATCAAAAGAGCAAGGGTAGATCAGGAACTGAGAGCTCAAGAAATGA ATTCAGGATCGGTATCTAATGAGCGGTCTAATGACTGATGTGCATTCAGACCCCACTTCC ATATTACGGTTTCATAGCCTTCAGTGAGGAAAATTACTTTTCCATGATCACAGACACACA GAAAAAATAATGATAGTAACCCTGACGGGGGCAGTTTACATATGTTGTATTATGAGTTGA CGAATAGAAACAATAACGTCTTAGCACGTAAGCAGACTGTGAAATATTATTTTTAAAAAG GGCCCGGAGCCTGAAAATGTAATTTATATACAGAATGAATAGGCTGTACTGTGTATTCCT CTGGAAGACATTATTTAACAGGAAACTCAGGCGTGTGTATATGCACACACATAGATATAT ATGCATACAAACTCTCCCACATCCACACTTTCCTCCCCCGCTACACAGCACACCCACACA CACGAGATGAAGGAGAAGAGAGCCTAATTCATGCATGCACCGACTAAATAACAATCAGAT GAAACACGAAGCATCTCTAAGTCATCCAAGGAAGGGACTGAGGGAACGGGAACCAGTGCA GCCGGGACAGGAGGGGCGACCGTCCAGTCCTCGAGGGTCCCGTGACTGCCAGCGGCGGCA GGGTCGCCACACGCGCACCGTCTCGATATACTCCGACTTGTTGTACAGCAGTTCGCCCAA CTCCATGGCTGCCCCCTCTCTGAACCTCAGGATCCTGTCAGTAGCTCAGGCTGAAGGTGA TTCCAGCTACTTCCGGTTGATCGGCCACTTCCGCTATCCCCGCCCTGGACTCTTATTCGG CTCTCCTCTAGTCAGCCCTGCTCGATCGCTCGGCAGTCTCCAGCTGCGCGTGCGCAGAGC GAACAGAGGTTTTAATTGGCCAGAGCGGGTAGCGCGCGGAACCTGTGTGG
1	EXON 1	122132720	122132909	-	0	190	CTCGGCAGGAACATAGTGGGGGTGAACTAGGTCCCTGTTCTTCTCAGGGGTTCCTCTTGG CCCCAGGAAGCCCTGGCTGGGTCCCCGTGACCACAGGCCCGAGGCTGGAGACGGCTGCTC CTTGTATTCGGCTTCCAACCCGATGGAAGAGCTTTCCGGGAAGCCCCTCAGCTATGCGGA GAAGGAAAAG
	INTRON 1 - 2	122129734	122132719			2986	GTGCCCGGGTTGCGGGAAGGGTGAC..........AGAATTGTTCTTGTTTTTCTTCCAG
2	EXON 2	122129674	122129733	0	0	60	TTGAAGGAAAAGCTAGCATTTTTGAAAAAGGAATACAGCAGGACACTTGCTCGACTTCAG
	INTRON 2 - 3	122123709	122129673			5965	GTGAGTGAATCATAGTTGGTCAAAT..........CACAGTGTGACTTCTGTTTCCACAG
3	EXON 3	122123637	122123708	0	0	72	ACTGAAACTGCAGATCGCCCTGCTTGTGACAATCTAAACCCAGGAAACCTACAGTTGGTT TCAGAGTTAAAG
	INTRON 3 - 4	122121216	122123636			2421	GTCAGCAAAATGTCCTGTTACTGTG..........AACATAATTTCTCTTTTGGGGTCAG
4	EXON 4	122121054	122121215	0	0	162	AATCCTTCCAGTTCCTGCTCTGTGGATGTGAGCGCCATGTGGTGGGAAAGAGCTGGTGCT AAGGAGCCATGTATCGTAACTGCTTGTGAAGATGTAGTTTCTCTTTGGAAACCCTTGAAT TCTCTGCAGTGGGAGAAAGTTCATACCTGGCACTTCACAGAG
	INTRON 4 - 5	122117356	122121053			3698	GTATGTCCAAGCCTCAGGGCTGAAA..........CTGAATATAACTTTCTTTTATGTAG
5	EXON 5	122117270	122117355	0	2	86	GTTCCAGTATTACAAATAGTTCCAGTGCCTGATGTTTACAATCTTATATGTGTAGCTTTG GGAAGTTTGGAAATCAGAGAAATCAG
	INTRON 5 - 6	122114471	122117269			2799	GTACGCAGTTTCTGAGAACTCCACA..........CTCCTCGGATTTGTGTTTGGTGTAG
6	EXON 6	122114309	122114470	2	2	162	GGCGTTGCTGTGCTCTTCTGGTGATGACAGTGAAAAGCAAGTCCTCCTGAAATCTGGAGA TATAAAAGCTATGCTTGGCCTGACAAAGCGGAGGCTAGTTAGTAGCACTGGAACCTTTTG CAGTCAACAAATACAAATCATGACATTTGCTGACGACGGAAG
	INTRON 6 - 7	122113367	122114308			942	GTAAGAAAAGCATTGATTGGTCTTA..........GATTTTCAGTACTGTTTTAATACAG
7	EXON 7	122113250	122113366	2	2	117	CAGCAAAGATGAACAGCTTTTGATGCCTCCTGATGAGACTGTACTGACTTTTGCTGAAGT CCAAGGGACGCAGGAAGCTCTGCTTGGTACTACCACTGTGAACAGCATTGTGATCTG
	INTRON 7 - 8	122112033	122113249			1217	GTGAGCTTTCGCTCTATATGTGAGT..........TTTCTCACTTATTTTGATGTCTAAG
8	EXON 8	122111945	122112032	2	0	88	GAATTTAAAAACCGGCCAGCTCCTGAAGAAGATGCACATTGATGACTCCTACCAGGCTTC GGTCTGTCACGGAGCCTATTCTGAGAAG
	INTRON 8 - 9	122110831	122111944			1114	GTGAGTACTGACCCAGGGCTGTGTG..........GGTGATTGTTTCTCTCCTGCAACAG
9	EXON 9	122110682	122110830	0	2	149	GGGCTCCTGTTTGTTGTTGTGAGTCAACCTTGTGCCAAAGAGAGCCAGGCCCTTGGAAGC CCTGTGTTCCAGCTGCTGGTGATTAACCCTAAGACGGCCCAGAGTGTGGGTGTTCTGCTG TGTTCCCTTCCTCAGGGGCAGGCTGGAAG
	INTRON 9 - 10	122107729	122110681			2953	GTAAGTGTGTGTGTGCTGCTCTTCA..........GAATGTCTCTTCTTCTTTGTCTCAG
10	EXON 10	122107262	122107728	2	-	467	GTTCCTGGAAGGGGATGTGAAAGATCATGTCGCAGCAGCAGTCCTGACTTCTGGGACAAT TGCCATTTGGGATTTGCTTCTGGGTCACTGCACGGCTCTCCTCCCACCTGTCTCTGACCA GAGTTGGTCTTTGGTTAAATGGTCGGGTACAGATTCTCACTTGCTAGCTGGACAAAAGGA TGGAAATATATTTATATACCGCTACTTTTAAGAGGCAAATAGTTTGGAGGTTTTTTGTTT TTTGTTTTTGTTTTTGTTTTTTTTAAGAATACAATATCTGAATGACATTTAATGTGATTA CTTGAATGTATTTCCCACACACTTAATTTTCTTCTGATAGTGGCTACTGACGGAACATTT GTTTATAGTTATTTTCAGGTTAATAGTTTTAAGTCATTCTTTGCACATTTGCTATTACAG CTGTATATAACCAGTGAATGTTAATAAATATTTATTTTGATACATTC
	3' upstream sequence						TGCTTGTCTTGTTCTATTTTTTTTTTCTAGTCTATTCACATCAATTCAAAAATAAGAAAT ACTGCCGGGCATGGTGCCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGG ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAAAAAAAAAAAAAACCTTATACAA CAAGTCATAGCTCAGTGCAATAACTCAGTGGACAGATGAGTATTATTAGTGTTAGGATGT ACGGATTGCTGCTGGGCTTCTGTCCTGAGAGGCATAAAGTGCTTCACAGGACCTTTAAGG GTTAGTTCCAGTGCTGCTATGGACAAAGGTTGGGCAGTTAGTACATGCTGGAAAGCTCTG TGGAGGGTGACAGCTGATTCTTGCAGGATAAACAGGTGAAGATGTGAGGGATTCCAGGCA GGAAGTACAGACAACTGAATTGCAAAGACAACCAAAGCATGCCATAAGGAATGAGGTCCC GGATCAGTCCAGGTAGCCAGGGGTCTTGTGTAAACTTCATTGTGCAAGGAAAGATGAGCG ACTGAGCAGTAAGCAGATCAGGCTGTACTCTGGCTCCAGAGTGAGCAAAGGCTCTGTGAA GACTGAGAATAGAGGCAGGCAGATGGGCTTGGAAAGTGATGGTATCAGTAATTGTTAAAA GTTCTCAGAAATCACCCAAAATGGGAAGGGTAGCAGGGTGGAGGGAGGGTATGGGGGGCT TCCAAGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAATTGAAGAAAAAA AAAAGAAATCACCCAAAAAGAATGCGTAATAGGTAACTGGATATAGAACTGTGGAGTCAG ATTCAAATGGGAATTAACTCCTCTGGAACACACTGGTTCTGAAAACTTGAAAGTTTAAAG TCAAGGGTGGATTAAAGGTACCACTCTAAGACTGATGTTTAGATGATGAGGGAGACTGAA TGTATTTATATATTTATTTCAGATACAGTGCAAACTGTCT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Palb2 (ENSMUSG00000044702)
Transcript ID	ENSMUST00000063587

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 385 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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