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Target CDS Information

Gene Symbol (Gene ID) Nosip (ENSMUSG00000003421)
Cross Reference
CCDS CCDS52242.1
EMBL AK007962, AK010006, BC089029
Fantom 1810073C22, 2310061K06
GO GO:0005634, GO:0005654, GO:0005737, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Nosip-002
OTTP OTTMUSP00000027571
OTTT OTTMUST00000057193
protein_id AAH89029.1, BAB25373.1, BAB26637.1
Reactome R-MMU-1430728, R-MMU-202131, R-MMU-203754, ...show all
RefSeq_mRNA NM_001163684.1
RefSeq_peptide NP_001157156
UCSC uc009gsy.2
UniParc UPI0000027569
Uniprot/SWISSPROT Q9D6T0
Vega_transcript Nosip-002, OTTMUST00000057193
Vega_translation 201185, OTTMUSP00000027571
Definition protein_id:ENSMUSP00000103461
translation:
MTRHGKNCTAGAVYTYHEKKKDTAASGYGTQNIRLSRDAVKDFDCCCLSLQPCHDPVVTP
DGYLYEREAILEYILHQKREIARQVKAYEKQRGARREEQKELQRAAAQDQVRGFLEKEAA
IVSRPLNPFMPKAATLPNTEGEQPGPSVGPVGKDKDKALPSFWIPSLTPEAKATKLEKPL
DDSVDRVGLITRSERYVCAVTRDSLSNATPCAVLRPSGAVVTLECVEKLIRKDMVDPVNG
DTLTERDIIVLQRGGTGFAGSGVKLQAEMSRPVMQA

Chromosome 7
Length
Position(start - end)
3887
45073495 - 45077383
Orient to Chromosome plus
Link Location : (7:45073495-45077383)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Nosip (ENSMUSG00000003421)
Transcript ID ENSMUST00000107830
Reports
substitution
cSNPs1
Insertion15
Deletion22
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 45077320 (p.Thr256Thr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000107830)
MTRHGKNCTAGAVYTYHEKKKDTAASGYGTQNIRLSRDAVKDFDCCCLSLQPCHDPVVTP
DGYLYEREAILEYILHQKREIARQVKAYEKQRGARREEQKELQRAAAQDQVRGFLEKEAA
IVSRPLNPFMPKAATLPNTEGEQPGPSVGPVGKDKDKALPSFWIPSLTPEAKATKLEKPL
DDSVDRVGLITRSERYVCAVTRDSLSNATPCAVLRPSGAVVTLECVEKLIRKDMVDPVNG
DTLTERDIIVLQRGGTGFAGSGVKLQAEMSRPVMQA*
MSMv4 transcript
MTRHGKNCTAGAVYTYHEKKKDTAASGYGTQNIRLSRDAVKDFDCCCLSLQPCHDPVVTP
DGYLYEREAILEYILHQKREIARQVKAYEKQRGARREEQKELQRAAAQDQVRGFLEKEAA
IVSRPLNPFMPKAATLPNTEGEQPGPSVGPVGKDKDKALPSFWIPSLTPEAKATKLEKPL
DDSVDRVGLITRSERYVCAVTRDSLSNATPCAVLRPSGAVVTLECVEKLIRKDMVDPVNG
DTLTERDIIVLQRGGTGFAGSGVKLQAEMSRPVMQA*
homology100.00 (277 / 277)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Nosip (ENSMUSG00000003421)
Transcript ID ENSMUST00000107830
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGGTCGTATATTTCTAGGTCTTGAAGGCTTGAGGAGACAGAGCCCTGGGG
ATCCACAGCCTAGAGCTTGGGTCCCAAGTTTCTAGATCCCAATAACGTGGGGAATCAGGA
CACCAGATCCTCTGCCCAGGAGTTTCTCGGGGAGCATGCACCCACTTACCTGGCCAGGGC
TGGGAGCTCTGCCTCTCTTCTTTAACGAAGGCCCTCTGGGTCAGAGTAGCCAGCTGTGCA
AAGGGGTAGGCAAGAGGGGAGGGGAGGAGAGGAGGGGAGCTCCTCCTGGGTTACTAGGCC
CGAGCCGGCTACTGGCGAGGGGGCGGGGCTACTGATTACCTTCTTTGGGAGGGACTCAGG
TAAGGGACAAAGTACTTAAAGGGACCATAGGATCAAGGTCTTCAGTGCCACGGCCCCACA
CAGAAGAAACAAGGCTTTCCGACACCATGGAGGGATCTAGGGGGCTTTATTAGAGTCTCC
TCTTCCCTACTTGTCCAGCCCGAGTCTCTCTCTACAGACGACTTGGCAGAGCCAGGAAAA
TAAATCTTAGGTCTCAAGAGATCTACACACTGGTGGGAAGGGAATTCTTTGGTTCCTAGA
ATAACTGGGCGGTACCACAATAAATCTGTTTCCTGAGGATAACTTGAACAGTTTAGTCTC
GAGATCTTTGAAAATTGTTTTTTCTATAATAGGGGAAAGAGTTCTCACTTATCGACTCTT
AAGATGCAATGGGGGAAAAAATAAGTAATATATTTGGGGAACTGGATATCAGTCTCTTCG
GGTGACAGAGTTAAGTCTCCAAACTCAAACTTGAAGAGACTCAAAGCAACTGCCCCGCTC
TGGGTAATGCCTAGAACAGGCTAGGGTGTCTCCCAGAGTCAAACCACTTTCGCTCACCGG
AACCTTCGAGTAGTCACTCACGTTTCCGGGGGGATGGAAGAGAAGAAGAAAGCACTTACC
AAGCCAGGCGAAGCGCCTCCGCGACTAGGGGCAGAGTTATTTCCGGTCTC
1 EXON 1 45062429 45062531 - - 103
CTCCTGTCGGGCGGAAGTAGGAGGAGTAGAGTTTAAAAACAGAACTCTTTTTCCGGTTCG
GGACGTAGTTGAAGCAACGACAAGCCGGATAACCGCTCTTGAG
INTRON 1 - 2 45062532 45073489 10958
GTAAGCTGCAGGCGGTGAGGGGTCG..........GTCACCCTGACACTTCCCCCCTTAG
2 EXON 2 45073490 45073564 - 1 75
ACAGGATGACGCGGCATGGCAAGAACTGCACTGCAGGGGCCGTCTACACCTACCACGAGA
AGAAGAAGGACACAG
INTRON 2 - 3 45073565 45073981 417
GTACCATCCTAGGGACATCACTGTC..........CATTCCCACCTTGTTCTGTCCCCAG
3 EXON 3 45073982 45074087 1 2 106
CGGCCTCGGGCTATGGGACCCAGAACATTCGACTGAGCCGGGACGCTGTGAAAGACTTTG
ACTGCTGCTGTCTCTCTCTGCAGCCCTGCCATGACCCTGTGGTCAC
INTRON 3 - 4 45074088 45074605 518
GTAAGCAGGGGAGGGGCAAAGGGGC..........CGTCCCTCATCCCCTCCCTCTGCAG
4 EXON 4 45074606 45074687 2 0 82
GCCAGACGGCTACCTGTATGAGAGGGAAGCGATCCTGGAGTACATCCTGCACCAGAAGAG
AGAGATCGCCCGGCAGGTGAAG
INTRON 4 - 5 45074688 45076068 1381
GTGATGGAGGCTGAGGGGAGGAAGA..........CTAACCCAGGTCCCTCTTCCCCCAG
5 EXON 5 45076069 45076228 0 1 160
GCCTATGAGAAGCAGCGAGGAGCGAGGAGAGAAGAGCAGAAAGAGCTGCAGCGAGCTGCA
GCCCAGGACCAAGTTAGAGGCTTCCTAGAGAAGGAGGCGGCCATCGTGAGCCGGCCCCTC
AACCCCTTCATGCCCAAGGCTGCCACCTTGCCCAACACAG
INTRON 5 - 6 45076229 45076309 81
GTGACAAGGAATACCTGCCCTTGGT..........GTACCCCAGCTTCTCCCTTCCACAG
6 EXON 6 45076310 45076428 1 0 119
AGGGTGAACAGCCAGGGCCCAGTGTGGGTCCCGTAGGCAAGGACAAGGACAAAGCACTGC
CCAGCTTCTGGATTCCCTCACTAACGCCCGAGGCAAAGGCCACCAAGCTGGAAAAGCCG
INTRON 6 - 7 45076429 45076626 198
GTGAGGACCCAATGTCCAGGATTCC..........CCTGACGTCAGTGCGCTTCACGCAG
7 EXON 7 45076627 45076739 0 2 113
CTGGACGACTCTGTGGACCGCGTGGGACTCATCACACGCAGTGAGCGCTACGTTTGCGCA
GTGACCCGAGACAGTCTGAGCAATGCCACGCCGTGCGCAGTGCTGCGTCCCTC
INTRON 7 - 8 45076740 45076820 81
GTGAGTGCGGGGTGTGGGGAGAAGA..........CTTTTGGCACTGTCTTCCACTGTAG
8 EXON 8 45076821 45076929 2 0 109
TGGGGCTGTGGTCACCCTGGAGTGTGTTGAGAAACTGATCCGGAAGGACATGGTGGACCC
CGTGAATGGGGACACGCTGACAGAGCGCGACATCATCGTGCTGCAGCGG
INTRON 8 - 9 45076930 45077311 382
GTGAGTTGCCATTCGCTCACCGCAG..........GCTTGTTCCTTTCTCTCCTCTCTAG
9 EXON 9 45077312 45077416 0 - 105
GGCGGCACAGGCTTTGCGGGCTCCGGAGTGAAGCTACAGGCAGAAATGTCTCGGCCAGTG
ATGCAGGCCTGAGCCTTGGCCTAATAAACGTGGATGTGAACATCT
3' upstream sequence
GGATGCCTGGCGCCTCATTGTAGGACCGGCGACAGAAGGAGTGGGCCTGCGGTGTGGGCC
TGAGCTCCTGGGATTTACTCAGTCACTTAGGACCAGGCAGAAACCCCAGCGTGAACCTGT
GGGTCTCCTCCAGCCTCAGGCAGGACTTGGAAGAGGGTGCCCTGAACAAGAAGTGCAAGT
CTCGTGATAGCACTCCCAGGCCAGCTACCTCCCGAGACCCCTAGACATGGACCTGCCCCC
ACCAAGTGCCCCTCCCCCAGCGATCCCTACAGACCCATTACACACTGCACACTGCTTCAC
ATGCACGTACCCTCCTCCTCTTCTTTCCCTGAACACCTGAGAATATCTCTCAAGAGCCAA
CTTCCCTTCCCCAGCCCCCTTAAACTTGCTCAAAGAGACGCAGACCACCCTCATCCCTGC
CGGCAAGTAAAAATAGCTTTCTTTTCTCTTTGTACTGGCAAATGCACACACTAAGCAAGT
GTTGAGTTCCTTAATGTATATCTAAGGGAGGGGTTTGTGCACATGAGTCCAATGCCTGCA
TAGGCCGTACTAACCTGTCAGACCCCTGGCTCTGGGGTCAGGCAGCCTTGAGTAGCCTAG
TCTAGATGATGGGGGCCAGGCTTGGGTCCTCTGCCAAGAGCAGCAAGCACTCTAAACCAC
TGAGCCATCTTCACCCCGTGTTTCCATCCCATCACAGAAGAGAACTGCTGCAAAATTGAG
GCTACTTTGTGCTGTATAAGACTGCCTCAGAATAAGAGAAACAATTATATACATTTGAGT
CCTTAAATCTGGCCAAATTCTTTGTTGTTTTATTTTTCGAGACAGGGTTTCTCTGTGTAG
CCCTGGCTGTCCTGGAACTCATTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACC
TGACTCTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTGTTGGGCAAATTCTTGAT
GGAAAAAAACAAAACACTGGCCATGCAGTAATGAGAAGAT..........

Sequence Detail Report

Gene Symbol (Gene ID) Nosip (ENSMUSG00000003421)
Transcript ID ENSMUST00000107830
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 277 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information