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Target CDS Information

Gene Symbol (Gene ID) Ttpal (ENSMUSG00000017679)
Cross Reference
CCDS CCDS38317.1
EMBL AK018052, AK033600, AK039450, ...show all
Fantom 5830472M02, 9130023G07, A330044H06, ...show all
GO GO:0003674, GO:0005215, GO:0005622, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Ttpal-002
OTTP OTTMUSP00000031109
OTTT OTTMUST00000002116
protein_id AAH52389.3, BAC28381.1, BAC30352.1, ...show all
UCSC uc008ntd.1, uc008nte.1
UniParc UPI000019B040
Uniprot/SWISSPROT Q9D3D0
Vega_transcript OTTMUST00000002116, Ttpal-002
Vega_translation 185916, OTTMUSP00000031109
Definition protein_id:ENSMUSP00000105035
translation:
MSEESDSLRTSPSVASLSENELPLPPPDPPGYVCSLTEDLVTKAREELQEKPEWRLRDVQ
ALRDMVRKEYPYLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHGCRRSWPEVFSNLRPS
ALKDVLNSGFLTVLPHTDPRGCHVLCIRPDRWIPSNYPITENIRAVYLTLEKLIQSEETQ
VNGIVILADYKGVSLSKASHFGPFIAKKVIGILQDGFPIRIKAVHIVNEPRIFKGIFAII
KPFLKEKIANRFFLHGSDLNSLHTNLPRNILPKEYGGTAGELDTASWNAVLLASEEDFVK
EFCQPMPACDNLLGQPLLPEGLISDAQCDDSMRAMKSQLYSCY

Chromosome 2
Length
Position(start - end)
8413
163607227 - 163615641
Orient to Chromosome plus
Link Location : (2:163607227-163615641)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ttpal (ENSMUSG00000017679)
Transcript ID ENSMUST00000109408
Reports
substitution
cSNPs6
Insertion36
Deletion27
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num0
synonymous substitutions 163607349 (p.Val41Val), 163607595 (p.Lys123Lys), 163607622 (p.Thr132Thr), 163611841 (p.Glu177Glu), 163615554 (p.Gln315Gln), 163615593 (p.Cys328Cys),
non-synonymous substitutions
B6 transcript
(ENSMUST00000109408)
MSEESDSLRTSPSVASLSENELPLPPPDPPGYVCSLTEDLVTKAREELQEKPEWRLRDVQ
ALRDMVRKEYPYLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHGCRRSWPEVFSNLRPS
ALKDVLNSGFLTVLPHTDPRGCHVLCIRPDRWIPSNYPITENIRAVYLTLEKLIQSEETQ
VNGIVILADYKGVSLSKASHFGPFIAKKVIGILQDGFPIRIKAVHIVNEPRIFKGIFAII
KPFLKEKIANRFFLHGSDLNSLHTNLPRNILPKEYGGTAGELDTASWNAVLLASEEDFVK
EFCQPMPACDNLLGQPLLPEGLISDAQCDDSMRAMKSQLYSCY*
MSMv4 transcript
MSEESDSLRTSPSVASLSENELPLPPPDPPGYVCSLTEDLVTKAREELQEKPEWRLRDVQ
ALRDMVRKEYPYLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHGCRRSWPEVFSNLRPS
ALKDVLNSGFLTVLPHTDPRGCHVLCIRPDRWIPSNYPITENIRAVYLTLEKLIQSEETQ
VNGIVILADYKGVSLSKASHFGPFIAKKVIGILQDGFPIRIKAVHIVNEPRIFKGIFAII
KPFLKEKIANRFFLHGSDLNSLHTNLPRNILPKEYGGTAGELDTASWNAVLLASEEDFVK
EFCQPMPACDNLLGQPLLPEGLISDAQCDDSMRAMKSQLYSCY*
homology100.00 (344 / 344)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ttpal (ENSMUSG00000017679)
Transcript ID ENSMUST00000109408
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTGGCGGCACACACTCACTGTCTCAGAAGACAAGGCGCAAGAGTCATGAG
TTGGGGGCCAGCTGGTCTACAAAGACACCCTCTATTAAAAACAAACAAAACAGATAAACA
CAACTCAGAATTCCCAGGGTACCTCGAACTCCTCTCACATATTTAGTTTGACATCTGGCA
AAATCCATTGTGTCCTTATGTCCTTGAAGGTCACTTCCCACCACTCTAGGACTCCACTTA
TTCATAAGGTAGGGAAAGGATGAGGGACTTAAGGTTATCCCTTTGAATATGACATTTTCT
TAGACCGACGAAATTTCTCTCTAGAAATGGTCTGTTGTCCTTATTCTACCTGAAAGAGAT
TTGCCTCGAAATTACAGTTGCACAAACCATAGGTATGTGTGGTGAGGCTAGTAAATGGGT
CAGATGTGGAGTTAGTAAACTCCTTTTCAAACTACTGCTGTCTCGAGACAACATTGTGAA
CCCCAGAGCAGGAAACAAGTAGTTTCTGAGTCGGGGTCCAGGGCAAGAATCGTTATTCAC
GAAGAAATAGAGGCGAAGAGGCTAGTGCACTTGGCCAAAGCGGCTCAGCTGATGGCATAC
TGACACAGGCAGCCAGTCCAGACATCAGCTGAGGACAGAGTAGTTCTGCAAATGATAAGC
CTGAGGTCTAGGTCTGAAGCTGGTTTCTGCATTGATTTGCCGCTTCTCTAGAGGTCACAG
CAGGCAGGGGGATTGAAAAAAAAAAATATATATATATATGTATAATAAAAATAAATAAAT
AAAAAGACGATTTAATGAGAAAATGATGTAGAACACTAGGCATATGGCAGTGTGTTCCAG
CTTCCCTCCCCGAGGCCTCAGTTTCCCCACCCGAAACCCAACTCAGCTGCACAGCCCGGG
CCACCAGGTGGTGTCAAGCCCCAAGTCAGCGCTGCAAAGTTCACTCATGCGCATTCCCGG
ATGGGCGCCGCCTACACGCGGCTCGAGCGTCACTTCCGGCGCGAGGGCCG
1 EXON 1 163602322 163602414 - - 93
GGCCGGCCGGCCGGGGAGTGCGGGTCTGTTCTGCGCGCGCTGCCAGCCGAGGCTCCTGCC
GCCGTGACCCGCGCTCCGCCCGCCGCCGGGCTG
INTRON 1 - 2 163602415 163607211 4797
GTGAGTGCCCACGAGCCCGGGTGTG..........TCACTTGTGGCCTGTGTGTCAGCAG
2 EXON 2 163607212 163607674 - 1 463
GGACCCTGATAGCTAATGTCAGAAGAAAGTGACTCTCTGAGAACCAGCCCCTCTGTGGCC
TCACTCTCCGAAAATGAGCTGCCACTGCCTCCACCGGACCCTCCCGGCTACGTGTGCTCC
CTGACAGAAGACTTGGTTACCAAAGCCAGGGAAGAGCTGCAGGAGAAGCCCGAGTGGAGG
CTGCGGGATGTGCAGGCCCTCCGAGACATGGTGCGGAAGGAGTACCCATACCTGAGCACG
TCGCTGGACGATGCCTTCCTGTTGCGCTTTCTGAGGGCCCGAAAGTTTGATTATGACCGG
GCCCTGCAGCTGCTGGTCAACTACCACGGCTGCAGGCGGAGCTGGCCAGAGGTCTTCAGC
AACCTGAGGCCGTCAGCCCTGAAGGACGTTCTCAACTCTGGATTCCTTACGGTGCTGCCC
CACACGGACCCCAGGGGCTGCCATGTCCTCTGCATCCGACCAG
INTRON 2 - 3 163607675 163611758 4084
GTACTGGGGAACGTGTGCTCTCTCT..........CACTGTCCATCTCTTGTGACCACAG
3 EXON 3 163611759 163611952 1 0 194
ACAGATGGATACCAAGCAACTACCCAATTACCGAGAACATCCGAGCCGTATACTTGACAT
TAGAAAAACTCATTCAGTCCGAAGAGACCCAGGTGAACGGGATTGTTATCCTTGCCGACT
ACAAGGGAGTGAGCTTATCAAAAGCATCTCATTTTGGGCCTTTTATAGCCAAAAAGGTGA
TTGGCATCCTTCAG
INTRON 3 - 4 163611953 163613734 1782
GTATGGCCCCTGGTCACCGCATGCC..........AACAAGGCGCTCTTCTCACACACAG
4 EXON 4 163613735 163613845 0 0 111
GATGGCTTCCCCATTCGGATAAAAGCAGTTCACATAGTGAACGAACCTCGGATATTTAAG
GGCATTTTCGCCATCATAAAACCATTTCTGAAGGAGAAAATTGCTAACAGG
INTRON 4 - 5 163613846 163615362 1517
GTAAGTGATGTACTTTGAACATGAT..........TGCTTTTTATACTGTTCTGTTTTAG
5 EXON 5 163615363 163616500 0 - 1138
TTCTTCCTCCATGGGTCTGACCTGAACTCTCTCCACACAAACCTGCCAAGGAATATCCTC
CCCAAGGAGTATGGGGGCACAGCTGGGGAGCTGGACACTGCCTCCTGGAACGCCGTGCTG
CTGGCCTCAGAGGAGGATTTTGTGAAAGAGTTCTGCCAGCCCATGCCTGCCTGCGACAAC
CTCCTGGGCCAACCCCTGCTACCTGAGGGGCTGATCTCAGATGCGCAGTGCGATGACTCC
ATGCGAGCCATGAAGTCCCAGCTCTACTCCTGCTATTAGCCCTCTTTCGGGAGAGTACCG
TGTGTGATTCCTTCCTTCCTTCCTTAGAAATGCACAGGCTGAGATGCCAGGACCTCCGTC
TTGCTCCATCCCTCTGCAACAGCATGGAGCTGCCTGCAGAGATTTAAGGCACGCCCATCA
CAGGCAGACCTTTGACTGAGTTATTCCAGGGAAGACATGGAAATTGCCCTGGTGTACTCT
TAAGTTTGCAGCTGTTACTCTGGAAGCTGTATCTGTTTCTTATGCATCTTGGAAAGAACT
AAGGTCAAAGTCACTCTGAAGTGACCAGGAGAAGACAACTTGACTGATCACAACTCTGAA
ACAATCGCCAATCCTTAGAGGTGGCCACACGTAAGACTTTTGAGTCTCTTTCCCATAAAC
CCTAGGTGTTGACCTCTTGCTCATCAGCAAAGTTCAAGGTTCAGGCCCCAGTTGTCATTG
TTGGGCCTGGGAAGCACTAACTGAGTGGTAGAAACCCCAGGCCCAGGTAGTACTTAAGAT
CAAATTTGGAAGCCAGAGGCTTCAAAGCATCCCTGGGAGTCCAGGGTTAAATCTTGCAAT
AGAAACTTTTCCCAACCCCATAAAGCCTTAGCTCTGGTTCTCCATGGAATCATGTAGGTC
AGCATAAAATACTGGATTCTAGGACTGCGTGGCTAAAAGCATTTGGACCAGGAGTCAGGT
CGTATGACTGACAAGACACGGGCTTCAGCTTGTCATCTCTCAGTGAGGCTACATGGAATG
AGGGTCTTTGTGGCTGCTGAAGTTGTTAGGCTTCTGCTTGGGAAGACATTCCCTAGAGGT
GGTTGGATTTTTTTGTTTTGTTTTGTTGTAGTATGAATACAGCCTTATGTAAAGGAAC
3' upstream sequence
AGAACCATCTGGCCCTCCCTTTAAAGAAACTAGTATGTTCCTGGGAGTTGGTGGAGGCCA
ACTGCCTTTGCAGAATAATGGGTAAACTTGAAAGGGATGGCTTTGGTGAGGCCGACCAGA
TCTCATACAAACTCCTTCCACACTGGAGACATTCATACTATATTAGAAACAGCCACAGTA
ATTGCCAGATTTGGGCTGTTTTTGTCCCTGGAAACATACAGGAGCAGGCTATTGCTGGTT
CACCTGGGGGCCCTGCCCTCTCAGACACACTGGAGTCTAGTATGGGAGGACCACTTGGAC
TGAATGTCAGCTCTGTGTTTGGGTATTTTAGACACCTGACAAGGTTTTAGCCTTAACTCA
AGCACTGAGTGAGGTGATTTATCTCCTGGCTTTTGACTTGTTCCCTTTGTATTCACTATG
TATTATAGTGTCAAGTACTGTTGGTTGTACATCTCCTAGACTTAAGCAGGCATTGCATAC
AGCTTACACACAGTGCTTGGAGATCAAAGGTCAGTCGGTTGTTACTAAGCTGTTCCACCC
TTAACAGCATTTCTCAAAATGTCTACAGAAGCTCTTTATGGAAACTTACCTCAATAATGT
CAATTCTATGGGACATTCTTTTCACCTTAGATGCTAATCGTTGATCTTTTAGATCCTGGC
TAAGCTTTAGGGCCAATATACCCCTCTTGACTGCCCATTGAGACCATTTGCTGCTGAGTT
TCTGCTATTTGGTTTAGCTCCTGGCCTCCTAGACACCTGAAAAGACCCATGATGGCCCCC
TGCAGCCTTGATGGGAGAGTCTTATTAGAAGCTTTCTTAGGTGGTTCAGAAGGAAAAAAC
AAAGGGAAAACCTCAGTCCCACTGGGTTCCCTGAATTTAAATTGTGTCACCTGACTAGTT
CTCCTGACTTAACAAAGGGACAACCAGGTTCTTGGGGAGAAATCTCAGGGCAGAAATGTT
ACCTGTTTGCCAGGCCTTTCTGGCTAGGCCAAGAGGGAGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Ttpal (ENSMUSG00000017679)
Transcript ID ENSMUST00000109408
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 344 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information