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Target CDS Information

Gene Symbol (Gene ID) Ttpal (ENSMUSG00000017679)
Cross Reference
EMBL AL591488
GO GO:0003674, GO:0008150, GO:0016020
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Ttpal-005
OTTP OTTMUSP00000031110
OTTT OTTMUST00000038419
UniParc UPI000157484E
Uniprot/SPTREMBL A6PW50
Vega_transcript OTTMUST00000038419, Ttpal-005
Vega_translation 185917, OTTMUSP00000031110
Definition protein_id:ENSMUSP00000121669
translation:
MSEESDSLRTSPSVASLSENE

Chromosome 2
Length
Position(start - end)
63
163607227 - 163607291
Orient to Chromosome plus
Link Location : (2:163607227-163607291)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ttpal (ENSMUSG00000017679)
Transcript ID ENSMUST00000152135
Reports
substitution
cSNPs0
Insertion22
Deletion14
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000152135)
MSEESDSLRTSPSVASLSENE
MSMv4 transcript
MSEESDSLRTSPSVASLSENE
homology100.00 (21 / 21)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ttpal (ENSMUSG00000017679)
Transcript ID ENSMUST00000152135
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGACAAGGCGCAAGAGTCATGAGTTGGGGGCCAGCTGGTCTACAAAGACA
CCCTCTATTAAAAACAAACAAAACAGATAAACACAACTCAGAATTCCCAGGGTACCTCGA
ACTCCTCTCACATATTTAGTTTGACATCTGGCAAAATCCATTGTGTCCTTATGTCCTTGA
AGGTCACTTCCCACCACTCTAGGACTCCACTTATTCATAAGGTAGGGAAAGGATGAGGGA
CTTAAGGTTATCCCTTTGAATATGACATTTTCTTAGACCGACGAAATTTCTCTCTAGAAA
TGGTCTGTTGTCCTTATTCTACCTGAAAGAGATTTGCCTCGAAATTACAGTTGCACAAAC
CATAGGTATGTGTGGTGAGGCTAGTAAATGGGTCAGATGTGGAGTTAGTAAACTCCTTTT
CAAACTACTGCTGTCTCGAGACAACATTGTGAACCCCAGAGCAGGAAACAAGTAGTTTCT
GAGTCGGGGTCCAGGGCAAGAATCGTTATTCACGAAGAAATAGAGGCGAAGAGGCTAGTG
CACTTGGCCAAAGCGGCTCAGCTGATGGCATACTGACACAGGCAGCCAGTCCAGACATCA
GCTGAGGACAGAGTAGTTCTGCAAATGATAAGCCTGAGGTCTAGGTCTGAAGCTGGTTTC
TGCATTGATTTGCCGCTTCTCTAGAGGTCACAGCAGGCAGGGGGATTGAAAAAAAAAAAT
ATATATATATATGTATAATAAAAATAAATAAATAAAAAGACGATTTAATGAGAAAATGAT
GTAGAACACTAGGCATATGGCAGTGTGTTCCAGCTTCCCTCCCCGAGGCCTCAGTTTCCC
CACCCGAAACCCAACTCAGCTGCACAGCCCGGGCCACCAGGTGGTGTCAAGCCCCAAGTC
AGCGCTGCAAAGTTCACTCATGCGCATTCCCGGATGGGCGCCGCCTACACGCGGCTCGAG
CGTCACTTCCGGCGCGAGGGCCGGGCCGGCCGGCCGGGGAGTGCGGGTCT
1 EXON 1 163602349 163602414 - - 66
GTTCTGCGCGCGCTGCCAGCCGAGGCTCCTGCCGCCGTGACCCGCGCTCCGCCCGCCGCC
GGGCTG
INTRON 1 - 2 163602415 163607027 4613
GTGAGTGCCCACGAGCCCGGGTGTG..........CTCTCTCTCTCCCCTCCCCCTCTAG
2 EXON 2 163607028 163607291 - - 264
AGGCAGGGTCTCTCTGTGTAATAGCTGTGGCTGTCCCAGAACTCACTTGTAGAGCAGGCT
GGCCTTGAACTCATTTAACTCCTCCTGCCTCTGCCTCCTGAGTGCCGGGATTAAAGGCGT
GCACTACCACCAGTGGCTTCACGCTTCACCTTCTTAATCTCACTTGTGGCCTGTGTGTCA
GCAGGGACCCTGATAGCTAATGTCAGAAGAAAGTGACTCTCTGAGAACCAGCCCCTCTGT
GGCCTCACTCTCCGAAAATGAGCT
3' upstream sequence
GCCACTGCCTCCACCGGACCCTCCCGGCTACGTGTGCTCCCTGACAGAAGACTTGGTTAC
CAAAGCCAGGGAAGAGCTGCAGGAGAAGCCCGAGTGGAGGCTGCGGGATGTGCAGGCCCT
CCGAGACATGGTGCGGAAGGAGTACCCATACCTGAGCACGTCGCTGGACGATGCCTTCCT
GTTGCGCTTTCTGAGGGCCCGAAAGTTTGATTATGACCGGGCCCTGCAGCTGCTGGTCAA
CTACCACGGCTGCAGGCGGAGCTGGCCAGAGGTCTTCAGCAACCTGAGGCCGTCAGCCCT
GAAGGACGTTCTCAACTCTGGATTCCTTACGGTGCTGCCCCACACGGACCCCAGGGGCTG
CCATGTCCTCTGCATCCGACCAGGTACTGGGGAACGTGTGCTCTCTCTGGGATGGGTCTT
CACCCCGTTTCCTCTCATAGTCCCCTACTTCTTTGTTTTAGTGAAGGGTCTTTCCTTTTT
GGTTTTAGCTTTTTTAAACAGCCCAGGCTGACCTCAGACTTACTGTGCAGCGGAGGATGA
CCTTGAACTCCTGACCCTCTTGCCTCTCCCTCCCAAGGGCTAAGATTTTAAGTATGTATC
ACTGTGGCTGGCTCCAAAGCTCTTTTGACTTTGACTACCTGAGGACAACAAGCCTTGACC
TAATGAGGCAGAAACAGCTCCCAGATCTACTGCACCAAAGAACATGGACCCCAGGGCACG
GGCCTCCGGCTCTGCCTGTGCTCGGCACAGACAGCTTCTTCATGCTTTTCCTCCAAAAGG
CAGCAAAGCAAACTCTGGCCCCTCTCAGTTCTCAGGCCACCTGACTGCGCAGTGAGCTTC
TGTCAATCAAACTCAAATTTCCTCAGGAGAGAGTGCGGTGGGCTCAGGAATCTGCTCTTG
GCCACAGACACAGGCACGCCCTGCCCAGCCCTTCCCAGCGCCTCCTCTCAGTGGGCTGAG
TACAGACAGGTCTAAGTGAGCCAGTGTGGGCTGGACAGAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Ttpal (ENSMUSG00000017679)
Transcript ID ENSMUST00000152135
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 21 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information