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Target CDS Information

Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Cross Reference
MGI_trans_name Tmeff2-002
OTTP OTTMUSP00000025450
OTTT OTTMUST00000053513
UniParc UPI00000E924D
Vega_transcript OTTMUST00000053513, Tmeff2-002
Vega_translation 179215, OTTMUSP00000025450
Definition protein_id:ENSMUSP00000110212
translation:
MVLWESPRQCSSWTLCEGFCWLLLLPVTLLIIARPVKLAAFPTSLSDCQTPTGWNCSGYD
DRENDLFLCDTNTCKFDGECLRIGDTVTCVCQFKCNSDYVPVCGSNGESYQNECYLRQAA
CKQQSEILVVSEGSCATDTGSGSGDGEKFSKVMLILKPCTASSLEETNSKEIILCNPSNT
HLLKKNENANLTCWSEPFLQAYGLMRTWNSRQREAAKGITETRFLPPPSAYCLGIFIGAN
VKINSEALFRQWTVLKGTIPVP

Chromosome 1
Length
Position(start - end)
51,700
50,927,948 - 50,979,649
Orient to Chromosome plus
Link Location : (1:50927948-50979649)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Transcript ID ENSMUST00000114565
Reports
substitution
cSNPs5
Insertion45
Deletion57
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num1
synonymous substitutions 50938245 (p.Ser105Ser), 50938269 (p.Glu113Glu), 50938275 (p.Tyr115Tyr), 50979418 (p.Asn186Asn),
non-synonymous substitutions 50979395 (p.Asn179His),
B6 transcript
(ENSMUST00000114565)
MVLWESPRQCSSWTLCEGFCWLLLLPVTLLIIARPVKLAAFPTSLSDCQTPTGWNCSGYD
DRENDLFLCDTNTCKFDGECLRIGDTVTCVCQFKCNSDYVPVCGSNGESYQNECYLRQAA
CKQQSEILVVSEGSCATDTGSGSGDGEKFSKVMLILKPCTASSLEETNSKEIILCNPSNT
HLLKKNENANLTCWSEPFLQAYGLMRTWNSRQREAAKGITETRFLPPPSAYCLGIFIGAN
VKINSEALFRQWTVLKGTIPVP*
MSMv4 transcript
MVLWESPRQCSSWTLCEGFCWLLLLPVTLLIIARPVKLAAFPTSLSDCQTPTGWNCSGYD
DRENDLFLCDTNTCKFDGECLRIGDTVTCVCQFKCNSDYVPVCGSNGESYQNECYLRQAA
CKQQSEILVVSEGSCATDTGSGSGDGEKFSKVMLILKPCTASSLEETNSKEIILCNPSHT
HLLKKNENANLTCWSEPFLQAYGLMRTWNSRQREAAKGITETRFLPPPSAYCLGIFIGAN
VKINSEALFRQWTVLKGTIPVP*
homology99.62 (263 / 263)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Transcript ID ENSMUST00000114565
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGAAGCCCCACACACATACCCAACAGCCTGCCTGTCTCCCAAGGAGGTCT
ACAGTAACAAGGGACACAGCCTGCCTGTCTCTCAGGAGGTCTGCAATAACTAATGACAAG
GGGCATTAAGGGGTAGACACCTTAACCAGGGTCACAGTCCTTCCCTTTTGCACCTCCATC
TACAACTGGGACAGATTCTTCCCCTGTAGCCCAAAACTGTCCTGTCTTCCAGGAGGTTCT
CCCTGGCCAGGAACATAGGATCTCTGCCCTAATCAGGGACACAGGAGGCATGCTCTAACT
AGAGATACATAATACTACCTCCCACAAAAAAAATAAAAGGAATGAACAATCATCTCTCTT
TAATATCTCTCAACATCAATGGACTCAATTCCTGAAACAAACAAACAAACAAAAAGGACA
CAGGCTAACAGACTAGATATGTAAACAGGATCTTGCATTTTGTTGCATACAAGAAATGCA
CCTCAGTGACAAAGCCAGAAAATACCTCAGAGTAAAGGGCTAGAAAAAAGTTTCCCAAGC
AAAGTCCCAAGAAACAAACAGAAGTTGCCATTCTAATACCCAGTAAGTTAGATTTTCAAC
CAAAAGTTATCAAACAAGATCAGGAAGGACACTTCATATTCATCAAAGGAAACATCCATC
AAACTGAAGTCTCAATTCCCCAAATGCAAGGGCACCCACATTCATAAAAGAAACTTTACT
AAAGCCCAAAACACACTTTGAACCTCACACTTCAACACTCCACTCTCACCAATGGACAGG
TCATTGAAACAGAAACAGTGAAATTAAGAGAAGTTATGAACCAAATGAATTTAACAAATA
TCTACAGAACATTTCACCCCAAAACAAAAGAATATACCTTGTTCTCAGCATCTCATGGAA
CCTTGTCTAAAACTGACCAAATAATAGACATAGAACACTCAACAGATACAAGAAGATTGA
AATAATCCCATGCATTCTATCAGACCACCACAGACTAAGACTGGATTTAA
1 EXON 1 50,909,962 50,910,888 - - 927
ATAATACCAAAAACAACAGAAAGTCCACATACTCATGGAAAATGAACAACACTCTGCTCC
ATGATAACTTGGTCAGGGAAGAAATAAAGAAATCAAAGACTTTTATAGAATTCAATGAAA
CTGAAGACCCAACATGCCCAAATTCATGGGATACAATGAAAGAAGTGTTAAGAAGAAACG
TCATAGCATTAAGTATTTTCATAAAGAAATTGCAGAAATCCCAAACAACTTAACAACACA
CCTGAAAGCTCTAAAACAGAAAGAAGCAAAGACACCCACAACCTACAGGATAGGGAAAGA
AATCTTCACTAACCTCACATCTGATAAAGAGCTAATATCTAAAATATGTAAAGAACTGAA
GAAGTTAACTTAAAAAAAATACCCTCAAACAACCCAATCAAAAAGTGGGATATAGAACTA
AACAGAAAATCCACAACAGAGGAATCTCAAATGGCTGAGCACTTAAAAAATGCTCAAAGT
TCTTAGTCATCAGCAAATCAAAATGACCCTGAGATTCCACCTTACACCATTCAGAATAGC
TAAGATCAAAAATTTGGGTGACAGCATATTTTGGTGAGGATATAGAGAAAGAGGAACACT
CTTCTTCCGTTGCTGGTGGGACTGCAAAGTCTGCAGTTTCCTCTGAAAATTGGAAATAGT
TCTACCTGAAGATGCAGCTATACCACTCTTGGCTATATACCCAAAAGATGCCCCACCATG
ACACAACAACATGTGTTCCACCATGTTCATTGAAGCCTTACATGTAATAGCCAGAATCTG
GAAACAACTTAGATGTTCCTCAGCTGAAGAATGGATACAGAAAATGTGGTACATTTATAC
AATGGAATAGTACTCCACCACTAAAAATGAGAATACTATGAATTTTTAGGCATGTGGAGA
GAACTAGAAACTATCATCCTGAGTGAG
INTRON 1 - 2 50,910,889 50,912,787 1,899
GTAACACAGACCCCAAAGGACATGC..........AAACCCATTTTTTTTTTTTTGCTAG
2 EXON 2 50,912,788 50,912,872 - - 85
TTTATCTTGTTCCTAGAAGCATTACAGAGATTACAGAGGTCGATCAGGCCTAATTCACCA
TTCATTTCTCTCTGTGAGGTAAAGG
INTRON 2 - 3 50,912,873 50,914,230 1,358
ATAAGTGTAATCCTAAAACTGACAC..........TCTTCTCCTTATCTTTTGAACCAAG
3 EXON 3 50,914,231 50,914,328 - - 98
GTTTCTCACTGAATTTGGAGCTTAATCATTGACCCACCTGGCTGTCCAGTGAGCTCCAAG
AGTTCTCCCAGTTCTGCTTCCCAGTGTCTCAATTACAG
INTRON 3 - 4 50,914,329 50,925,266 10,938
GTACAAGCTGCCATGTTCAACATTT..........GTAACATTTTTCCTTGTAATTCTAG
4 EXON 4 50,925,267 50,925,409 - - 143
GTTACAGTCAAACTCTGCAACCCTAGCGCTGGTTTATGATCATAATCGCTGCAAAAACAC
ATTGTCTGAGGGACTTTGCCATAACTGCAGAGGGGCTCATATTCAAAAGCCTGATTAGTT
GCTGATCGCTGATCCACGCATTG
INTRON 4 - 5 50,925,410 50,925,541 132
GTATGGAAAATTCCAAATCCTCATT..........TTTGTTTTTGCGATATCTTTGGCAG
5 EXON 5 50,925,542 50,925,746 - - 205
CTCCATCTTCTGGGCATTCCTTTACCTTCAACAATTCAGTTGCTCCATCTAAAAGCCGAT
TTTTCTGATGCCTCCAATGTCTGGTCAAATTGATCTGTGTTAATGGAGTCTTCGCTGGTG
AGAGATGCCATTGACTGGAACGCTGAGATCTGCGGCTGCTTATTTGCCAGGGGCAAGAGA
CACCAAGATTCAGAAATCTTGAGAG
INTRON 5 - 6 50,925,747 50,927,747 2,001
GTGGGCGGGGGAGGGGGAAAGGTAG..........AGCGGACTATCCTCTCACTCCGCAG
6 EXON 6 50,927,748 50,928,119 - 1 372
GCTGAGCCCGGTCACTGGATGTTGCTGAAACTCCGGAGATCATGCTCTCCTTTGGTCGCA
GTATCACCGCCGGCTGTCCCTGCCGCCGCCCCCTCCTCTGCTGCCGCGGTCCGCGGGATG
CTCAGTAGCCCGCTGCGTGGCCCCTGCGATCCCGTGTTCTTCAGAAGCCTTTGGTTGCTG
CAGAGTTGCGCGAAGTAGTCATGGTGCTGTGGGAGTCCCCGCGGCAGTGCAGCAGCTGGA
CACTTTGCGAGGGCTTCTGCTGGCTGCTGCTGCTGCCCGTGACGCTGCTTATCATAGCCC
GCCCGGTAAAACTCGCTGCTTTCCCTACCTCCTTAAGTGACTGCCAAACGCCCACCGGCT
GGAACTGCTCCG
INTRON 6 - 7 50,928,120 50,930,548 2,429
GTAAGTCCAGACCCTCAGCCCTCTA..........CTGGAGCATTCTTTTTCAACTTGAG
7 EXON 7 50,930,549 50,930,658 1 0 110
GTTACGATGACAGAGAAAATGATCTCTTCCTGTGTGACACCAACACCTGTAAATTTGACG
GGGAATGTTTAAGGATTGGAGACACTGTGACTTGCGTCTGTCAGTTCAAG
INTRON 7 - 8 50,930,659 50,938,212 7,554
GTAAGATATCTGATATTTGCATCTT..........TTTTTTTCCTCTCTTTGTTCTTCAG
8 EXON 8 50,938,213 50,938,342 0 1 130
TGTAACAGTGACTACGTGCCTGTGTGTGGCTCTAATGGAGAGAGCTACCAGAATGAATGC
TATCTGAGGCAAGCTGCCTGCAAACAGCAGAGTGAGATACTTGTGGTCTCAGAAGGATCC
TGTGCTACAG
INTRON 8 - 9 50,938,343 50,943,196 4,854
GTAGGCACAAATGTTCCTGAAATGG..........GAACTGTTTTCTCTTTTCTTCCCAG
9 EXON 9 50,943,197 50,943,223 1 1 27
ATACAGGATCGGGATCTGGAGATGGAG
INTRON 9 - 10 50,943,224 50,979,299 36,076
GTAGGAGGAGTTGCTGCTCTCCTTT..........ATGTTACCGGACACTGGAATCACAG
10 EXON 10 50,979,300 50,979,920 1 - 621
AAAAGTTTAGCAAAGTGATGCTGATATTAAAACCATGTACTGCATCATCTTTAGAAGAGA
CCAACTCAAAGGAAATAATACTATGTAACCCATCTCATACTCATCTCCTTAAAAAGAATG
AAAATGCGAACCTGACATGCTGGAGTGAGCCTTTTCTACAAGCGTATGGACTAATGAGGA
CCTGGAACTCAAGACAAAGAGAAGCTGCCAAGGGAATCACAGAGACAAGATTCTTGCCAC
CACCATCTGCTTACTGTCTGGGGATTTTCATAGGAGCCAATGTAAAAATAAACAGTGAGG
CACTGTTTAGACAGTGGACTGTGTTGAAGGGAACAATACCAGTTCCTTAAGTCTGAGACA
CTTTGGGGAATAAAGTCAAACCAGAAGGAAACTTAGTGGGTTGCAGAGAACTGTCCATGT
ATCATAAAGGCAAGATATTGCTATTCTGTGTCCTGCTGTGGAATAATTAATTGTGCACTA
TGGGAGACACCACACACACACTCGGGTCTCTGCTTCATAGGTTTGTTGCTTAAACTTTGT
AAATAGTCTTGGACAGGACAGTGTTGGAAGGAGTAGTTGAATGTGTTGTCCAAGATGCAC
AATAAAAACTTAAGACAAATG
3' upstream sequence
AACTGTGATGATTTCAACATTGATCCCTATTATCTAGGACATGTCTGGCACTTGCTACAC
CAGAGTTTCTATTAATTTTCTGGTCAATGTAAGCTTGTAGTTTATAATTAATAATGTCTA
TGTCTCACTATCCTGTCTGTATTTTTTAAAAAATATAATAGGTTAACTGAATTTACATTT
GGAAGAGATTTACACAACTAAATTTTTAATCGTATATTTTTATTTATGCAAGATAAACAA
AACAAGTGGGGCTTACTAACATCAGCACAAAAGGTGAATGGCAACAAAATGTTGGCTTCG
GAGACTTACAAGGAATTGTTCTGTGATGAGTCTTTTGGATTAGGGAGTACAGCAGAGACC
ACATAGTGAACAAAAGCTGAACGCAGTTAGTGATGGGCTAGGTGGCATTTTGCCTTCATT
GCATCACTTGTTCAATAGATGAATCAACTTATAGTCATGTGAAAGTACATAGTTGTGAGT
GCAGAATGGAATTGTTATTACATGCATCTGTGGTGGGAAGCTGATGTTCTGACATACTCC
AGTCTAGTGCATTTACTGTTGCGCAGGAGTATGTGCATCCTTTACTGCCTTCACCCTTAG
CTTCAAGGCAGAGGAGAGTTTACTGGTGTAGTACAGATGGAATTCATAAATGAAACCCAG
GCTCTTCATGCAGTGCTTGCTTCTACTTCTTCCCTGTCTTAATCTCATACATTCAGAACT
CTGTTGCCTAAGAAATAGCAACACTAATAGCCCACTCACAAAAGAGCTCCACGGCCCTGA
TTCTCATACAGAAGTTTGAAGGTGAGCACAGGCACAAGCTGAGCTTCCCTCAATGCTTCC
TCCACCCCACTCACTCTGCTAGCCTCTCCTTGTACACACACCCACTCACACGTATTTTTG
GAGGCAGAGGAGTACTGCTTGCTTCTGTGCAAATTAAGTTGCAGAAGAAAATAAATGTTG
ACATGAAACTGAAATACACTCACCAGGCTGGGAAGAGCTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Transcript ID ENSMUST00000114565
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 263 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information