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Target CDS Information

Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Cross Reference
MGI_trans_name Tmeff2-002
OTTP OTTMUSP00000025450
OTTT OTTMUST00000053513
UniParc UPI00000E924D
Vega_transcript OTTMUST00000053513, Tmeff2-002
Vega_translation 179215, OTTMUSP00000025450
Definition protein_id:ENSMUSP00000110212
translation:
MVLWESPRQCSSWTLCEGFCWLLLLPVTLLIIARPVKLAAFPTSLSDCQTPTGWNCSGYD
DRENDLFLCDTNTCKFDGECLRIGDTVTCVCQFKCNSDYVPVCGSNGESYQNECYLRQAA
CKQQSEILVVSEGSCATDTGSGSGDGEKFSKVMLILKPCTASSLEETNSKEIILCNPSNT
HLLKKNENANLTCWSEPFLQAYGLMRTWNSRQREAAKGITETRFLPPPSAYCLGIFIGAN
VKINSEALFRQWTVLKGTIPVP

Chromosome 1
Length
Position(start - end)
51700
50927948 - 50979649
Orient to Chromosome plus
Link Location : (1:50927948-50979649)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Transcript ID ENSMUST00000114565
Reports
substitution
cSNPs5
Insertion45
Deletion57
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num1
synonymous substitutions 50938245 (p.Ser105Ser), 50938269 (p.Glu113Glu), 50938275 (p.Tyr115Tyr), 50979418 (p.Asn186Asn),
non-synonymous substitutions 50979395 (p.Asn179His),
B6 transcript
(ENSMUST00000114565)
MVLWESPRQCSSWTLCEGFCWLLLLPVTLLIIARPVKLAAFPTSLSDCQTPTGWNCSGYD
DRENDLFLCDTNTCKFDGECLRIGDTVTCVCQFKCNSDYVPVCGSNGESYQNECYLRQAA
CKQQSEILVVSEGSCATDTGSGSGDGEKFSKVMLILKPCTASSLEETNSKEIILCNPSNT
HLLKKNENANLTCWSEPFLQAYGLMRTWNSRQREAAKGITETRFLPPPSAYCLGIFIGAN
VKINSEALFRQWTVLKGTIPVP*
MSMv4 transcript
MVLWESPRQCSSWTLCEGFCWLLLLPVTLLIIARPVKLAAFPTSLSDCQTPTGWNCSGYD
DRENDLFLCDTNTCKFDGECLRIGDTVTCVCQFKCNSDYVPVCGSNGESYQNECYLRQAA
CKQQSEILVVSEGSCATDTGSGSGDGEKFSKVMLILKPCTASSLEETNSKEIILCNPSHT
HLLKKNENANLTCWSEPFLQAYGLMRTWNSRQREAAKGITETRFLPPPSAYCLGIFIGAN
VKINSEALFRQWTVLKGTIPVP*
homology99.62 (263 / 263)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Transcript ID ENSMUST00000114565
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGAAGCCCCACACACATACCCAACAGCCTGCCTGTCTCCCAAGGAGGTCT
ACAGTAACAAGGGACACAGCCTGCCTGTCTCTCAGGAGGTCTGCAATAACTAATGACAAG
GGGCATTAAGGGGTAGACACCTTAACCAGGGTCACAGTCCTTCCCTTTTGCACCTCCATC
TACAACTGGGACAGATTCTTCCCCTGTAGCCCAAAACTGTCCTGTCTTCCAGGAGGTTCT
CCCTGGCCAGGAACATAGGATCTCTGCCCTAATCAGGGACACAGGAGGCATGCTCTAACT
AGAGATACATAATACTACCTCCCACAAAAAAAATAAAAGGAATGAACAATCATCTCTCTT
TAATATCTCTCAACATCAATGGACTCAATTCCTGAAACAAACAAACAAACAAAAAGGACA
CAGGCTAACAGACTAGATATGTAAACAGGATCTTGCATTTTGTTGCATACAAGAAATGCA
CCTCAGTGACAAAGCCAGAAAATACCTCAGAGTAAAGGGCTAGAAAAAAGTTTCCCAAGC
AAAGTCCCAAGAAACAAACAGAAGTTGCCATTCTAATACCCAGTAAGTTAGATTTTCAAC
CAAAAGTTATCAAACAAGATCAGGAAGGACACTTCATATTCATCAAAGGAAACATCCATC
AAACTGAAGTCTCAATTCCCCAAATGCAAGGGCACCCACATTCATAAAAGAAACTTTACT
AAAGCCCAAAACACACTTTGAACCTCACACTTCAACACTCCACTCTCACCAATGGACAGG
TCATTGAAACAGAAACAGTGAAATTAAGAGAAGTTATGAACCAAATGAATTTAACAAATA
TCTACAGAACATTTCACCCCAAAACAAAAGAATATACCTTGTTCTCAGCATCTCATGGAA
CCTTGTCTAAAACTGACCAAATAATAGACATAGAACACTCAACAGATACAAGAAGATTGA
AATAATCCCATGCATTCTATCAGACCACCACAGACTAAGACTGGATTTAA
1 EXON 1 50909962 50910888 - - 927
ATAATACCAAAAACAACAGAAAGTCCACATACTCATGGAAAATGAACAACACTCTGCTCC
ATGATAACTTGGTCAGGGAAGAAATAAAGAAATCAAAGACTTTTATAGAATTCAATGAAA
CTGAAGACCCAACATGCCCAAATTCATGGGATACAATGAAAGAAGTGTTAAGAAGAAACG
TCATAGCATTAAGTATTTTCATAAAGAAATTGCAGAAATCCCAAACAACTTAACAACACA
CCTGAAAGCTCTAAAACAGAAAGAAGCAAAGACACCCACAACCTACAGGATAGGGAAAGA
AATCTTCACTAACCTCACATCTGATAAAGAGCTAATATCTAAAATATGTAAAGAACTGAA
GAAGTTAACTTAAAAAAAATACCCTCAAACAACCCAATCAAAAAGTGGGATATAGAACTA
AACAGAAAATCCACAACAGAGGAATCTCAAATGGCTGAGCACTTAAAAAATGCTCAAAGT
TCTTAGTCATCAGCAAATCAAAATGACCCTGAGATTCCACCTTACACCATTCAGAATAGC
TAAGATCAAAAATTTGGGTGACAGCATATTTTGGTGAGGATATAGAGAAAGAGGAACACT
CTTCTTCCGTTGCTGGTGGGACTGCAAAGTCTGCAGTTTCCTCTGAAAATTGGAAATAGT
TCTACCTGAAGATGCAGCTATACCACTCTTGGCTATATACCCAAAAGATGCCCCACCATG
ACACAACAACATGTGTTCCACCATGTTCATTGAAGCCTTACATGTAATAGCCAGAATCTG
GAAACAACTTAGATGTTCCTCAGCTGAAGAATGGATACAGAAAATGTGGTACATTTATAC
AATGGAATAGTACTCCACCACTAAAAATGAGAATACTATGAATTTTTAGGCATGTGGAGA
GAACTAGAAACTATCATCCTGAGTGAG
INTRON 1 - 2 50910889 50912787 1899
GTAACACAGACCCCAAAGGACATGC..........AAACCCATTTTTTTTTTTTTGCTAG
2 EXON 2 50912788 50912872 - - 85
TTTATCTTGTTCCTAGAAGCATTACAGAGATTACAGAGGTCGATCAGGCCTAATTCACCA
TTCATTTCTCTCTGTGAGGTAAAGG
INTRON 2 - 3 50912873 50914230 1358
ATAAGTGTAATCCTAAAACTGACAC..........TCTTCTCCTTATCTTTTGAACCAAG
3 EXON 3 50914231 50914328 - - 98
GTTTCTCACTGAATTTGGAGCTTAATCATTGACCCACCTGGCTGTCCAGTGAGCTCCAAG
AGTTCTCCCAGTTCTGCTTCCCAGTGTCTCAATTACAG
INTRON 3 - 4 50914329 50925266 10938
GTACAAGCTGCCATGTTCAACATTT..........GTAACATTTTTCCTTGTAATTCTAG
4 EXON 4 50925267 50925409 - - 143
GTTACAGTCAAACTCTGCAACCCTAGCGCTGGTTTATGATCATAATCGCTGCAAAAACAC
ATTGTCTGAGGGACTTTGCCATAACTGCAGAGGGGCTCATATTCAAAAGCCTGATTAGTT
GCTGATCGCTGATCCACGCATTG
INTRON 4 - 5 50925410 50925541 132
GTATGGAAAATTCCAAATCCTCATT..........TTTGTTTTTGCGATATCTTTGGCAG
5 EXON 5 50925542 50925746 - - 205
CTCCATCTTCTGGGCATTCCTTTACCTTCAACAATTCAGTTGCTCCATCTAAAAGCCGAT
TTTTCTGATGCCTCCAATGTCTGGTCAAATTGATCTGTGTTAATGGAGTCTTCGCTGGTG
AGAGATGCCATTGACTGGAACGCTGAGATCTGCGGCTGCTTATTTGCCAGGGGCAAGAGA
CACCAAGATTCAGAAATCTTGAGAG
INTRON 5 - 6 50925747 50927747 2001
GTGGGCGGGGGAGGGGGAAAGGTAG..........AGCGGACTATCCTCTCACTCCGCAG
6 EXON 6 50927748 50928119 - 1 372
GCTGAGCCCGGTCACTGGATGTTGCTGAAACTCCGGAGATCATGCTCTCCTTTGGTCGCA
GTATCACCGCCGGCTGTCCCTGCCGCCGCCCCCTCCTCTGCTGCCGCGGTCCGCGGGATG
CTCAGTAGCCCGCTGCGTGGCCCCTGCGATCCCGTGTTCTTCAGAAGCCTTTGGTTGCTG
CAGAGTTGCGCGAAGTAGTCATGGTGCTGTGGGAGTCCCCGCGGCAGTGCAGCAGCTGGA
CACTTTGCGAGGGCTTCTGCTGGCTGCTGCTGCTGCCCGTGACGCTGCTTATCATAGCCC
GCCCGGTAAAACTCGCTGCTTTCCCTACCTCCTTAAGTGACTGCCAAACGCCCACCGGCT
GGAACTGCTCCG
INTRON 6 - 7 50928120 50930548 2429
GTAAGTCCAGACCCTCAGCCCTCTA..........CTGGAGCATTCTTTTTCAACTTGAG
7 EXON 7 50930549 50930658 1 0 110
GTTACGATGACAGAGAAAATGATCTCTTCCTGTGTGACACCAACACCTGTAAATTTGACG
GGGAATGTTTAAGGATTGGAGACACTGTGACTTGCGTCTGTCAGTTCAAG
INTRON 7 - 8 50930659 50938212 7554
GTAAGATATCTGATATTTGCATCTT..........TTTTTTTCCTCTCTTTGTTCTTCAG
8 EXON 8 50938213 50938342 0 1 130
TGTAACAGTGACTACGTGCCTGTGTGTGGCTCTAATGGAGAGAGCTACCAGAATGAATGC
TATCTGAGGCAAGCTGCCTGCAAACAGCAGAGTGAGATACTTGTGGTCTCAGAAGGATCC
TGTGCTACAG
INTRON 8 - 9 50938343 50943196 4854
GTAGGCACAAATGTTCCTGAAATGG..........GAACTGTTTTCTCTTTTCTTCCCAG
9 EXON 9 50943197 50943223 1 1 27
ATACAGGATCGGGATCTGGAGATGGAG
INTRON 9 - 10 50943224 50979299 36076
GTAGGAGGAGTTGCTGCTCTCCTTT..........ATGTTACCGGACACTGGAATCACAG
10 EXON 10 50979300 50979920 1 - 621
AAAAGTTTAGCAAAGTGATGCTGATATTAAAACCATGTACTGCATCATCTTTAGAAGAGA
CCAACTCAAAGGAAATAATACTATGTAACCCATCTCATACTCATCTCCTTAAAAAGAATG
AAAATGCGAACCTGACATGCTGGAGTGAGCCTTTTCTACAAGCGTATGGACTAATGAGGA
CCTGGAACTCAAGACAAAGAGAAGCTGCCAAGGGAATCACAGAGACAAGATTCTTGCCAC
CACCATCTGCTTACTGTCTGGGGATTTTCATAGGAGCCAATGTAAAAATAAACAGTGAGG
CACTGTTTAGACAGTGGACTGTGTTGAAGGGAACAATACCAGTTCCTTAAGTCTGAGACA
CTTTGGGGAATAAAGTCAAACCAGAAGGAAACTTAGTGGGTTGCAGAGAACTGTCCATGT
ATCATAAAGGCAAGATATTGCTATTCTGTGTCCTGCTGTGGAATAATTAATTGTGCACTA
TGGGAGACACCACACACACACTCGGGTCTCTGCTTCATAGGTTTGTTGCTTAAACTTTGT
AAATAGTCTTGGACAGGACAGTGTTGGAAGGAGTAGTTGAATGTGTTGTCCAAGATGCAC
AATAAAAACTTAAGACAAATG
3' upstream sequence
AACTGTGATGATTTCAACATTGATCCCTATTATCTAGGACATGTCTGGCACTTGCTACAC
CAGAGTTTCTATTAATTTTCTGGTCAATGTAAGCTTGTAGTTTATAATTAATAATGTCTA
TGTCTCACTATCCTGTCTGTATTTTTTAAAAAATATAATAGGTTAACTGAATTTACATTT
GGAAGAGATTTACACAACTAAATTTTTAATCGTATATTTTTATTTATGCAAGATAAACAA
AACAAGTGGGGCTTACTAACATCAGCACAAAAGGTGAATGGCAACAAAATGTTGGCTTCG
GAGACTTACAAGGAATTGTTCTGTGATGAGTCTTTTGGATTAGGGAGTACAGCAGAGACC
ACATAGTGAACAAAAGCTGAACGCAGTTAGTGATGGGCTAGGTGGCATTTTGCCTTCATT
GCATCACTTGTTCAATAGATGAATCAACTTATAGTCATGTGAAAGTACATAGTTGTGAGT
GCAGAATGGAATTGTTATTACATGCATCTGTGGTGGGAAGCTGATGTTCTGACATACTCC
AGTCTAGTGCATTTACTGTTGCGCAGGAGTATGTGCATCCTTTACTGCCTTCACCCTTAG
CTTCAAGGCAGAGGAGAGTTTACTGGTGTAGTACAGATGGAATTCATAAATGAAACCCAG
GCTCTTCATGCAGTGCTTGCTTCTACTTCTTCCCTGTCTTAATCTCATACATTCAGAACT
CTGTTGCCTAAGAAATAGCAACACTAATAGCCCACTCACAAAAGAGCTCCACGGCCCTGA
TTCTCATACAGAAGTTTGAAGGTGAGCACAGGCACAAGCTGAGCTTCCCTCAATGCTTCC
TCCACCCCACTCACTCTGCTAGCCTCTCCTTGTACACACACCCACTCACACGTATTTTTG
GAGGCAGAGGAGTACTGCTTGCTTCTGTGCAAATTAAGTTGCAGAAGAAAATAAATGTTG
ACATGAAACTGAAATACACTCACCAGGCTGGGAAGAGCTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Transcript ID ENSMUST00000114565
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 263 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information