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Target CDS Information

Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Cross Reference
EMBL AC122365
GO GO:0003674, GO:0003956, GO:0006471, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Art3-009
OTTP OTTMUSP00000036386
OTTT OTTMUST00000071133
UCSC uc008ycw.1, uc008ydc.1
UniParc UPI000161184A
Uniprot/SPTREMBL E9Q7Z7
Vega_transcript Art3-009, OTTMUST00000071133
Vega_translation 194243, OTTMUSP00000036386
Definition protein_id:ENSMUSP00000113008
translation:
MKMGHFEMVTTLLAAAVLMDIFQVKAEVLDMAENAFDDEYLKCKSRMESKYIPQMKREEW
ANDALLRMVWDNAEIQWEARKAQLFLPRNFKDTYGIALTAYVNEAQEQTSFYHTFSSAVK
MAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEKSYKTVVYSTSPDISFTFGEQNQARL
GNFTLAYSAKPETADNQRVLTIQTCFGVAVGKFLN

Chromosome 5
Length
Position(start - end)
4902
92388143 - 92393046
Orient to Chromosome plus
Link Location : (5:92388143-92393046)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Transcript ID ENSMUST00000120781
Reports
substitution
cSNPs1
Insertion21
Deletion27
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 92392981 (p.Ala194Ala),
non-synonymous substitutions
B6 transcript
(ENSMUST00000120781)
MKMGHFEMVTTLLAAAVLMDIFQVKAEVLDMAENAFDDEYLKCKSRMESKYIPQMKREEW
ANDALLRMVWDNAEIQWEARKAQLFLPRNFKDTYGIALTAYVNEAQEQTSFYHTFSSAVK
MAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEKSYKTVVYSTSPDISFTFGEQNQARL
GNFTLAYSAKPETADNQRVLTIQTCFGVAVGKFLN
MSMv4 transcript
MKMGHFEMVTTLLAAAVLMDIFQVKAEVLDMAENAFDDEYLKCKSRMESKYIPQMKREEW
ANDALLRMVWDNAEIQWEARKAQLFLPRNFKDTYGIALTAYVNEAQEQTSFYHTFSSAVK
MAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEKSYKTVVYSTSPDISFTFGEQNQARL
GNFTLAYSAKPETADNQRVLTIQTCFGVAVGKFLN
homology100.00 (215 / 215)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Transcript ID ENSMUST00000120781
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTCAGCCATAGCAGGCCGGCTGCTTGTTGTAGCTCAGCTTTGAATAGAAC
TACAGAGTGCTAGGCACGGTGATGCAGGACTGCACTCCCTGTACTCAGGAGCTCATAGCA
AAACCTTCTCAAACAAACAAACAGACAGACAGACAACAAACCCCAGACAAACAGAAAAGA
GGCTAGAAAGGAATCTCAGGTGGGGAGGGCTTGCCTCGCATGCAGGAATCCCCGGGTTTG
ATCCCCAGGACTGCATACACCAGGCTTTGTGGCACATGTCTGCAGTCCCACCACTGGACA
GGCAGGCGGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGAAGAGGAGAGAA
TCAGAAATTCAAACTCATTCTTAGCTATATGACAAATTGGAAGTCAGCCTGGGCTACAAG
AGACTCTTAAAAACAAAAACAAAACAACAACAACAACAAAAAAAAACCCAAAAAACAGTA
ACAAATTAGCTACCTGGATATTTAGAAACTTTCTGAGTCAGGTGCTGTGGCTGACACCTA
TAATCCCAGCACTTCTGTTTATCTGGAGGCTGCCCCAAGAGGCCAACTTGGTCTACATGG
CAAAATTCACCTCAGCCTATACTACAGGGACCCTATCTGAACAAACCAAACGGAAAAAGT
CTTTCTTGTAGCCACATTTGGAGGAGGAGGAGGAAGGGGGGGAGGAAAAAACAAGTGGAA
TTAATATTACTAATTTTCTTATTTAAACTATTGTATTTAAAGGGCACACTTACTTTCTTA
CTGTGATTGAAGTCCTTCAAGATTTTATACTGACAGCCCTCGGCATTTGCATACTAAATT
TTCATCACAGATAATTGATCTATATTTAGACTTCATGAAAGGTCAAGTTCAAAAACAGAT
GCAAGTCCGTCCGTTGCTCCAAGCACTGAAAGCAAACCAGCAAACCAATCACAGCTTTAA
AAGTTAGATAAAACGAACCGTCCTGAAACCGGTCCGTCTCAGTCACCAGG
1 EXON 1 92376975 92377050 - - 76
TCACGGTCAGAGTGCTCGCAGCAGCGCTGTGCTGCCTGGAGCTGGAGAGGCCGTTACAGC
TCTCCTCTGTCTGGAG
INTRON 1 - 2 92377051 92388133 11083
GTGAGTTTTCCTCCATGAAACCCCA..........ATTAACGTTTTTCATTCTAATCCAG
2 EXON 2 92388134 92388211 - 0 78
ACGTGAAAAATGAAGATGGGACATTTTGAAATGGTCACCACGCTGCTGGCAGCCGCAGTT
CTAATGGACATCTTCCAG
INTRON 2 - 3 92388212 92392468 4257
GTAATGAAGGGAACGGGAAGCATGC..........GCGATCCTTTCCTTTTGCTCCGAAG
3 EXON 3 92392469 92393046 0 - 578
GTGAAGGCGGAAGTGTTAGACATGGCAGAGAACGCGTTTGACGACGAATACCTGAAGTGC
AAAAGCAGAATGGAATCGAAGTATATTCCGCAGATGAAGAGGGAGGAGTGGGCAAACGAT
GCGCTCCTGCGGATGGTGTGGGACAATGCGGAGATCCAGTGGGAAGCGCGGAAGGCTCAG
CTCTTCCTCCCTAGAAACTTCAAGGACACCTATGGCATAGCTCTGACGGCCTACGTGAAT
GAGGCTCAAGAGCAGACTTCCTTCTACCACACATTCAGCAGCGCTGTGAAGATGGCCGGC
CTGTCCCGAAGACGGTACATCTATAACTTCCCGTTCAAGGCTTTTCATTTTTACTTGGTG
AGAGCCCTGCAGCTGCTGAGACGACCTTGCGAGAAAAGTTACAAAACTGTGGTGTACAGC
ACAAGCCCAGACATTTCATTCACATTCGGAGAGCAAAACCAAGCCAGGCTGGGTAACTTC
ACGTTGGCGTATTCAGCCAAACCGGAGACAGCTGACAACCAACGGGTGCTAACCATCCAG
ACCTGCTTTGGAGTCGCCGTGGGAAAGTTTCTTAATAA
3' upstream sequence
AGAAGACGACAGCGTTGTTTTAATACCTCTGAGTGAGGTTTTTCAAGTGTCGAGGAAAGG
AACTAGCAACGACCTTGTCCTTCAGAGCATAAACAGTACCTGCAGCTACTACGAGTGCGC
ATTCCTCGGGGGTAAGTAGTGGTCCCTCGCGATCGCGATCGAGGGATCCTGCGGGTCTGT
CTGGGAGGAAAGGGGTGGGGTGCACTCAGGTCCCGGAGAGCGACTGGTGTTTGCGAGGCA
GTTTTCAGCCTCACACTGAACGCTCTTTCTTCAGCTACAACTCAGTTGTCAGATAGATAC
CTGTACTTCATTACTAAAGTTAAACGACGCTGAGCAGCGCTGTAAAGCAAAGCCCATTTT
GCCCCACAGGGTTTCGAAATGGTCAGAAACAGTTTTTAGTTGTCACAACTTAGGAAGAGG
TATGGCTGCTATTGGGCAGGTAAGGCTAAGCAATGCTCAGGACCCTGTCCTGTAACTAAG
AATGATCTGGTCCAAAATGTCAGTAGTGTCGGCGTTGGCGTTGAGAATTCCCGCTGTCCC
ATCCCATTCCCAAGCATCTGGCATCGGTTCTAACTTTAAGCTGGGTTTTCCAGGTACACA
CCATCATGTTTGTAAGTGAACAGCATGCTTTCATTCTTTCTGAACTTAATTTTATTTTTA
GACGTTGTCTAAATATTCCCAATGGGGTATTCAGCTCTCATACACCACATATCATTTAAG
CTGTCTTTACTGTTCCTGGACCAATGGTGTAGGCTTGTGCTCCCACCTGTTCAGGAGGCT
GAGGCAGAAATGCCAAGGCTTGGGCAACTAAGGTGAGTCCCTGTCTCAGAGGGTAATAGG
TTAGTGATCGAGTGCTCTCTTTGCATCCTAAGGATTATAAAGACTCTTCGTTTTTCTCTC
AGCTTTATTAGAAAGCCTAGCAGTAATTGGTGACTGGGGCTAGGCTAGGTTCCACGGCTC
CTCTGCAGCATTAGTAACCCTGGCTATCTCTCTGTTCCAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Transcript ID ENSMUST00000120781
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 215 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information