top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Cross Reference
GO GO:0003674, GO:0003956, GO:0006471, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Art3-017
OTTP OTTMUSP00000036400
OTTT OTTMUST00000071145
UCSC uc008ydd.2
UniParc UPI0001611846
Uniprot/SPTREMBL F6W3A0
Vega_transcript Art3-017, OTTMUST00000071145
Vega_translation 194254, OTTMUSP00000036400
Definition codon_start:2
protein_id:ENSMUSP00000123571
translation:
XVVLIPLSEVFQVSRKGTSNDLVLQSINSTCSYYECAFLGGLKTENCIANAEYIDPRYLY
NPDMDNQKLEDSGRNNLDPDRMPEIKVLQTEENPLLPDEKPAPGLVPGPKSHPSASSGNT
LLPSVMASTILLVASAVNFIEL

Chromosome 5
Length
Position(start - end)
21306
92393059 - 92414366
Orient to Chromosome plus
Link Location : (5:92393059-92414366)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Transcript ID ENSMUST00000138003
Reports
substitution
cSNPs0
Insertion21
Deletion28
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000138003)
VVLIPLSEVFQVSRKGTSNDLVLQSINSTCSYYECAFLGGLKTENCIANAEYIDPRYLYN
PDMDNQKLEDSGRNNLDPDRMPEIKVLQTEENPLLPDEKPAPGLVPGPKSHPSASSGNTL
LPSVMASTILLVASAVNFIEL*
MSMv4 transcript
VVLIPLSEVFQVSRKGTSNDLVLQSINSTCSYYECAFLGGLKTENCIANAEYIDPRYLYN
PDMDNQKLEDSGRNNLDPDRMPEIKVLQTEENPLLPDEKPAPGLVPGPKSHPSASSGNTL
LPSVMASTILLVASAVNFIEL*
homology100.00 (142 / 142)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Transcript ID ENSMUST00000138003
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTTACTTTGGGCCAGAAGTGCAAAGTCACATGAATAAGGGAGGGTGTAT
CTAGAGGGAAAGGTGACATTTGTCGGGATGTATTTTCTACCACACACAGTATTTTATAAT
ACATGCTATTTTGCACTATACAAAACGGTCTTAAGAGTTGGAGGAAATGTAGCGAAGGAC
ACTGTTCCAGCCTGGGCTAGACTGTCTTCGGTCTCCTCCCCATCCCCGAGCTCAGGTGAG
TGAATTGCACAGAGAATTTGACCCGCACCTCTCCACTGACACAGACTCCCTCCGCGGTCC
GCACAATGGGATGTGATCCATAATTAAAAGGGCACGGGAGAGTGGGCGCGCTACTGTGAG
AGAAATTTATATCAGATAAATGTGTGATTTCAAGAGCGATCCTTTCCTTTTGCTCCGAAG
GTGAAGGCGGAAGTGTTAGACATGGCAGAGAACGCGTTTGACGACGAATACCTGAAGTGC
AAAAGCAGAATGGAATCGAAGTATATTCCGCAGATGAAGAGGGAGGAGTGGGCAAACGAT
GCGCTCCTGCGGATGGTGTGGGACAATGCGGAGATCCAGTGGGAAGCGCGGAAGGCTCAG
CTCTTCCTCCCTAGAAACTTCAAGGACACCTATGGCATAGCTCTGACGGCCTACGTGAAT
GAGGCTCAAGAGCAGACTTCCTTCTACCACACATTCAGCAGCGCTGTGAAGATGGCCGGC
CTGTCCCGAAGACGGTACATCTATAACTTCCCGTTCAAGGCTTTTCATTTTTACTTGGTG
AGAGCCCTGCAGCTGCTGAGACGACCTTGCGAGAAAAGTTACAAAACTGTGGTGTACAGC
ACAAGCCCAGACATTTCATTCACATTCGGAGAGCAAAACCAAGCCAGGCTGGGTAACTTC
ACGTTGGCGTATTCAGCCAAACCGGAGACAGCTGACAACCAACGGGTGCTAACCATCCAG
ACCTGCTTTGGAGTCGCCGTGGGAAAGTTTCTTAATAAAGAAGACGACAG
1 EXON 1 92393059 92393177 - 1 119
CGTTGTTTTAATACCTCTGAGTGAGGTTTTTCAAGTGTCGAGGAAAGGAACTAGCAACGA
CCTTGTCCTTCAGAGCATAAACAGTACCTGCAGCTACTACGAGTGCGCATTCCTCGGGG
INTRON 1 - 2 92393178 92401995 8818
GTAAGTAGTGGTCCCTCGCGATCGC..........CTAAAATTTTATCTTTGTGTTTCAG
2 EXON 2 92401996 92402028 1 1 33
GTCTGAAAACAGAAAATTGTATCGCGAACGCAG
INTRON 2 - 3 92402029 92403594 1566
GTAAGATGAATTTAGAAGATCATCT..........GGACCAAAATGTATTTGTGTTTCAG
3 EXON 3 92403595 92403627 1 1 33
AATATATTGACCCTAGGTATCTCTACAACCCAG
INTRON 3 - 4 92403628 92404836 1209
GTGAGTACACACTTCTACAAACAAC..........TGCATTTTGCTTGTTTGTGACTTAG
4 EXON 4 92404837 92404866 1 1 30
ATATGGACAATCAGAAGCTTGAAGACTCTG
INTRON 4 - 5 92404867 92409269 4403
GTAAGACATTCTCATAAACCCTGGG..........AACCAGCATTTATTTCTGCTTTTAG
5 EXON 5 92409270 92409302 1 1 33
GTAGGAACAACCTTGACCCTGACAGAATGCCAG
INTRON 5 - 6 92409303 92411141 1839
GTAAGGCCATTTCCTCTTTACCCTG..........TTTTTTTTTTTTTTTTTTCCATTAG
6 EXON 6 92411142 92411195 1 1 54
AAATTAAAGTGCTACAAACAGAGGAAAATCCTCTCCTGCCGGATGAAAAGCCTG
INTRON 6 - 7 92411196 92414241 3046
GTAATTTTCCATTGGGGGGTGGGGG..........CCCACGTCTGTGTTCTTTTCAACAG
7 EXON 7 92414242 92414623 1 - 382
CTCCAGGTCTGGTTCCAGGTCCGAAATCCCATCCCTCTGCATCCTCTGGCAATACGCTCC
TTCCATCAGTCATGGCATCCACCATTTTACTCGTTGCTTCTGCTGTAAACTTCATCGAGC
TATAGCTTGAAACGCTATCTTAATCTTTATCTGAAAGACTGCTATGGGGATCCCACAGGA
AGTCAAGAGAAAAAAATGTAGTTTTCCTTGGACAGACTTCACTGGATAAAAGAACTGTAT
ATTTGTTCCTCATTTTACAATTTAAAAAGCTGGTCCAGATAGTATCATAGAATTAACTTT
TCATTTCTGTATTAATTTTAGGACTGCAAAAATCCCAAAGCTATATACTTTTTGATCGGA
TTCAATAAAAACTTTAAGTTTA
3' upstream sequence
CTAAATGTTTTCCTGTTGTTTCCAAATATTAAAAGTCTATTACTAATGTTAGTGATTAAC
ATGAATTTACTGCCAGAATCAACAGGTGAAGAATCAGACTTCAAATAAAGGGGTAGACAG
GGCAAGAAACAGCGAGCTCCTGAGATGGTCCCACTTGCTTCAGGAAAGCTGTTACTTTCC
TTCAGTGCGTTTCTGTCTTCTGTCTTCCCTCCTCATCAAATGAACTGGGCAGGACCAGCC
ACCCCTCCATTATACTAGCCATATCTAAAGGTGATACCCGAGTGGGAAGATGAGCTCCCG
CATCAGCCACCGGCCCTGAGTAAGCGCTCAGCTGTCTACAGAAGGTGAGCAGAGTATCAG
AAACGCCTTTCTGCACTTGCACTTGGCTCCAAAGAAGACAACAGGCCTATCTTCTGAGCC
AAACTCATGCAAAGAAAAAAAGCCACTGGGATATAGCAAGCAGGGAAGGAAGATTGAAAA
CAAGAACAAAAGCAAAACCCAGGGAGAGCCATGCCATTCCTAGCAGTTGTATCGTCTCTA
TTCTTTACAAAGTAACCTCTTCTGCTTCACGGTCTACACATACAGCACTCCCGGCTCCAT
CCTCTCGTTAATACAGCAGGATGCACAGCGCTCTCATTAACAGCCCTCAGTGTAAGCCAA
AGCCACACAGAGCACAAACATAACCACAGCGTTTGGAGAGGAGCCCACAAGCCGAAGCCC
AGGTACATTTTGCAGTCAGAAGTTGTATGTAAAACTGGCACTGTGGGAGAATCTCATGAT
GCTGTAGGACTCGGCCAGTGTTTTCAGAGGCTAAGAAATGGGGGAAGTCTTCACTCTAGA
CGACAACTTCCATTTCTTAACCTCTAGTCAAAATATGTCAGCACTGACAAGTCTTTAAAT
AAAACACCAGACAGAATTACATAAAATTACAAATTAACAATTTATTTTAAGGATTTCATT
TTTAGAAATAAAAAAACAAAACAAAACAAAACAGCTTGCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Transcript ID ENSMUST00000138003
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 142 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information