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Target CDS Information

Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Cross Reference
EMBL AC122365
GO GO:0003674, GO:0003956, GO:0006471, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Art3-018
OTTP OTTMUSP00000036401
OTTT OTTMUST00000071146
UCSC uc008ydd.2
UniParc UPI000161184E
Uniprot/SPTREMBL F6Z2C7
Vega_transcript Art3-018, OTTMUST00000071146
Vega_translation 194255, OTTMUSP00000036401
Definition protein_id:ENSMUSP00000114826
translation:
LKTENCIANAEYIDPRYLYNPDMDNQKLEDSGRNNLDPDRMPEIKVLQTEENPLLPDEKP
DRSRGKANNPSKKYLLFFEECSEI

Chromosome 5
Length
Position(start - end)
10239
92401998 - 92412238
Orient to Chromosome plus
Link Location : (5:92401998-92412238)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Transcript ID ENSMUST00000152041
Reports
substitution
cSNPs1
Insertion20
Deletion21
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 92412166 (p.Asp61Asp),
non-synonymous substitutions
B6 transcript
(ENSMUST00000152041)
LKTENCIANAEYIDPRYLYNPDMDNQKLEDSGRNNLDPDRMPEIKVLQTEENPLLPDEKP
DRSRGKANNPSKKYLLFFEECSEI*
MSMv4 transcript
LKTENCIANAEYIDPRYLYNPDMDNQKLEDSGRNNLDPDRMPEIKVLQTEENPLLPDEKP
DRSRGKANNPSKKYLLFFEECSEI*
homology100.00 (85 / 85)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Transcript ID ENSMUST00000152041
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCTTGAATTGACAGCACCACCATGGCCATCAACTAGATTCTAACAGGCCT
GTTATATCCTGGACATGTGGAAATCAGACCAAGTTACCTGCATTTCTGGTTTAAATTCTA
AACATGATATGGGTTTTGAAGGTAGATTGTAGAAGAGCATGTGGGTCATTGTGAGAGTCA
TTGTGGAGCAGGTCTCTAAGGGGCATGTCCTAGGATAACCAGACCTCAACATTAAATCAA
TGAATCAGACAGATACAGAGAGGAGACCAAGCCATTCAGACTTCCATGGGCACCTGGGCT
GCCCTCCATGGCTTATACTGACATCTTCATATTTTTCTCACTGACCTACTAATGTTAGGC
AGGCTGGCAGAGTCCTGCTCTGTCTTGCCTAGGGACAAGCACTGGAGCATTGGTGACAAC
TTCCTATGGCATCGACCGTGCCAGTGTCTGGAGCCACCTGAAGCACTGACTGTTTCATGC
CATGTCCCTCGTCTCCCAAGATTGTAGAGCATTTCCCACCCAGAGGTATGTTTGGAACAT
ACCAACTCTTTTTCTATATGAATAGGAAGAGAATCTTTGCTCAGATGTAAAAGGTCCTGA
AAACAGGGTTGAGACCCCTTTCTCCAAGGGGTGAGGATTGTTGTGTCGAAGGCTGGGTAA
CGCTTGCTGTCTTCAGAGAGCATCAAGTTAGACAAGTGCTGTTCTCTCTAACTGTTGTAA
CACACCAGAGGCATAGACTGGAACGTAAAGTGCTAGCCCCGTGAGGGTCCTCCACGGTCA
CTATACGTAATTTCTTAGTAAAACCAGATCCCTCAAAAGGTGTGTGCCTTGTGCCAGTTC
ATATCACAGGGTCGTGGCTATTCTGTGAAGATAAAAACTATGTTCCTGAAATTTCACATC
CCATTAAAGTTTTGGTCTGAGAAACTAGGCATCCACAGATTAGATTACCAATAACCACAG
ATCATTTGAAACTTAGGTCATGTCTAAAATTTTATCTTTGTGTTTCAGGT
1 EXON 1 92401998 92402028 - 1 31
CTGAAAACAGAAAATTGTATCGCGAACGCAG
INTRON 1 - 2 92402029 92403594 1566
GTAAGATGAATTTAGAAGATCATCT..........GGACCAAAATGTATTTGTGTTTCAG
2 EXON 2 92403595 92403627 1 1 33
AATATATTGACCCTAGGTATCTCTACAACCCAG
INTRON 2 - 3 92403628 92404836 1209
GTGAGTACACACTTCTACAAACAAC..........TGCATTTTGCTTGTTTGTGACTTAG
3 EXON 3 92404837 92404866 1 1 30
ATATGGACAATCAGAAGCTTGAAGACTCTG
INTRON 3 - 4 92404867 92409269 4403
GTAAGACATTCTCATAAACCCTGGG..........AACCAGCATTTATTTCTGCTTTTAG
4 EXON 4 92409270 92409302 1 1 33
GTAGGAACAACCTTGACCCTGACAGAATGCCAG
INTRON 4 - 5 92409303 92411141 1839
GTAAGGCCATTTCCTCTTTACCCTG..........TTTTTTTTTTTTTTTTTTCCATTAG
5 EXON 5 92411142 92411195 1 1 54
AAATTAAAGTGCTACAAACAGAGGAAAATCCTCTCCTGCCGGATGAAAAGCCTG
INTRON 5 - 6 92411196 92412164 969
GTAATTTTCCATTGGGGGGTGGGGG..........TCAGAATCTCTTTATGTTGTAAAAG
6 EXON 6 92412165 92412271 1 - 107
ATAGAAGTCGAGGAAAGGCCAACAATCCTAGTAAGAAATACCTCCTTTTCTTTGAAGAAT
GCTCTGAAATATAAAACTGTCAAGCTAATTCTTTTTTTCATTAAAAG
INTRON 6 - 7 92412272 92414241 1970
GTGATGTTGCATGCATTTGAGGCAT..........CCCACGTCTGTGTTCTTTTCAACAG
7 EXON 7 92414242 92414447 - - 206
CTCCAGGTCTGGTTCCAGGTCCGAAATCCCATCCCTCTGCATCCTCTGGCAATACGCTCC
TTCCATCAGTCATGGCATCCACCATTTTACTCGTTGCTTCTGCTGTAAACTTCATCGAGC
TATAGCTTGAAACGCTATCTTAATCTTTATCTGAAAGACTGCTATGGGGATCCCACAGGA
AGTCAAGAGAAAAAAATGTAGTTTTC
3' upstream sequence
CTTGGACAGACTTCACTGGATAAAAGAACTGTATATTTGTTCCTCATTTTACAATTTAAA
AAGCTGGTCCAGATAGTATCATAGAATTAACTTTTCATTTCTGTATTAATTTTAGGACTG
CAAAAATCCCAAAGCTATATACTTTTTGATCGGATTCAATAAAAACTTTAAGTTTACTAA
ATGTTTTCCTGTTGTTTCCAAATATTAAAAGTCTATTACTAATGTTAGTGATTAACATGA
ATTTACTGCCAGAATCAACAGGTGAAGAATCAGACTTCAAATAAAGGGGTAGACAGGGCA
AGAAACAGCGAGCTCCTGAGATGGTCCCACTTGCTTCAGGAAAGCTGTTACTTTCCTTCA
GTGCGTTTCTGTCTTCTGTCTTCCCTCCTCATCAAATGAACTGGGCAGGACCAGCCACCC
CTCCATTATACTAGCCATATCTAAAGGTGATACCCGAGTGGGAAGATGAGCTCCCGCATC
AGCCACCGGCCCTGAGTAAGCGCTCAGCTGTCTACAGAAGGTGAGCAGAGTATCAGAAAC
GCCTTTCTGCACTTGCACTTGGCTCCAAAGAAGACAACAGGCCTATCTTCTGAGCCAAAC
TCATGCAAAGAAAAAAAGCCACTGGGATATAGCAAGCAGGGAAGGAAGATTGAAAACAAG
AACAAAAGCAAAACCCAGGGAGAGCCATGCCATTCCTAGCAGTTGTATCGTCTCTATTCT
TTACAAAGTAACCTCTTCTGCTTCACGGTCTACACATACAGCACTCCCGGCTCCATCCTC
TCGTTAATACAGCAGGATGCACAGCGCTCTCATTAACAGCCCTCAGTGTAAGCCAAAGCC
ACACAGAGCACAAACATAACCACAGCGTTTGGAGAGGAGCCCACAAGCCGAAGCCCAGGT
ACATTTTGCAGTCAGAAGTTGTATGTAAAACTGGCACTGTGGGAGAATCTCATGATGCTG
TAGGACTCGGCCAGTGTTTTCAGAGGCTAAGAAATGGGGG..........

Sequence Detail Report

Gene Symbol (Gene ID) Art3 (ENSMUSG00000034842)
Transcript ID ENSMUST00000152041
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 85 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information