MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cbarp (ENSMUSG00000035640)

Cross Reference

EMBL	AC159999
GO	GO:0003674, GO:0005575, GO:0008150
goslim_goa	GO:0003674, GO:0005575, GO:0008150
MGI_trans_name	Cbarp-005
OTTP	OTTMUSP00000051856
OTTT	OTTMUST00000045739
UniParc	UPI0001F794AD
Uniprot/SPTREMBL	E9Q5J1
Vega_transcript	Dos-005, OTTMUST00000045739
Vega_translation	208070, OTTMUSP00000051856

Definition

protein_id:ENSMUSP00000125962
translation:

MQPTATMATAAATTATVALTTSWDNATSRPTGHGGSREDHHYLSGQRHPPYTRLGAVRVR
LISVSLTPRRRPRLQGGRPRGPGHRNRALPSHQLHRPPRVLQRGCPV

Chromosome

Length
Position(start - end)

996
80136383 - 80137380

Orient to Chromosome

minus

Link

Location : (10:80136383-80137380)
/

Detail Map

name	Cbarp (ENSMUSG00000035640)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cbarp note : calcium channel, voltage-dependent, beta subunit associated regulatory protein [Source:MGI Symbol;Acc:MGI:1354170]

name	Atp5d (ENSMUSG00000003072)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Atp5d note : ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit [Source:MGI Symbol;Acc:MGI:1913293]

name	Cbarp (ENSMUSG00000035640)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000170219

name	Cbarp (ENSMUSG00000035640)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000169546

name	Cbarp (ENSMUSG00000035640)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000105369

name	Cbarp (ENSMUSG00000035640)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000147778

name	Cbarp (ENSMUSG00000035640)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000132523

name	Cbarp (ENSMUSG00000035640)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000123967

name	Cbarp (ENSMUSG00000035640)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000142853

name	Cbarp (ENSMUSG00000035640) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS56734.1 RefSeq_peptide:NP_001182197 RefSeq_mRNA:NM_001195268.1 RefSeq_peptide_predicted:XP_006513030.1 Uniprot/SPTREMBL:E9QP85 UCSC:uc011xim.1 EMBL:AC159999 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cbarp-202 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 UniParc:UPI0000F22154
definition	note : transcript_id=ENSMUST00000170219 protein_id : ENSMUSP00000131487 translation : MQPTATMATAAATTATVALTTSWDNATSRPTAEPDPILDNYVLLVVVMSLFVGGTLVVLSGVLLLCKRCWEVHQRFNRAMEEAEKTTTTYLDNGTHPIQDPDCRGEDPEGQDTETERFLATSSTGRRVSFNEAALFEQSRKAQDKGRRYTLTEGDFHHLKNARLTHLHLPPLKIATIHECDSGEASAAATPHPATTSKDSLAIFQPPGKTLTGHSVGPSSALPGGPYNSVDFSEISPSTSSDSGEGISLDAGTRGAKAAGPETVPGEMGTGSSGSGTVLQFFTRLRRHASLDGASPYFKVKKWKLEPSQRASSLDTRGSPKRHHFQRQRAASESMEQEGDVPHADFIQYIASAGDSVAFPPPRPFLASPTSPPPTLGRLEAAEAAGGASPETPPEHGISLGPEHAQQQDPQQEQDAEHAQCSYRDLWSLRASLELHAATASDHSSSGNDRDSVRSGDSSGSGSGGGGAAPAFPPPPESPPALRPKDGEARRLLQMDSGYASIEGRGAGDEVSELPAPARSPPRSPRAWPRRPRRDYSIDEKTDALFHEFLRHDPHFDDAPRHRTRAHPHTHARKQWQQRGRQHSDPGGARAATPPGVARPTRAPLRRGDSVDCPPEGRALPITGDDPSIPVIEEEPGGGGGGCPGSGLCVEPAGALLDKLAASLDERLFSPRLAEPVASSQVLIVAAAAPTSPDHSPA

name	Cbarp (ENSMUSG00000035640) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SPTREMBL:E9PW07 UCSC:uc011xim.1 EMBL:AC159999 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cbarp-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 UniParc:UPI000274728E
definition	note : transcript_id=ENSMUST00000169546 protein_id : ENSMUSP00000132978 translation : MATAAATTATVALTTSWDNATSRPTAEPDPILDNYVLLVVVMSLFVGGTLVVLSGVLLLCKRCWEVHQRFNRAMEEAEKTTTTYLDNGTHPIQDWAQFESDSSLFPYPDCRGEDPEGQDTETERFLATSSTGRRVSFNEAALFEQSRKAQDKGRRYTLTEGDFHHLKNARLTHLHLPPLKIATIHECDSGEASAAATPHPATTSKDSLAIFQPPGKTLTGHSVGPSSALPGGPYNSVDFSEISPSTSSDSGEGISLDAGTRGAKAAGPETVPGEMGTGSSGSGTVLQFFTRLRRHASLDGASPYFKVKKWKLEPSQRASSLDTRGSPKRHHFQRQRAASESMEQEGDVPHADFIQYIASAGDSVAFPPPRPFLASPTSPPPTLGRLEAAEAAGGASPETPPEHGISLGPEHAQQQDPQQEQDAEHAQCSYRDLWSLRASLELHAATASDHSSSGNDRDSVRSGDSSGSGSGGGGAAPAFPPPPESPPALRPKDGEARRLLQMDSGYASIEGRGAGDEVSELPAPARSPPRSPRAWPRRPRRDYSIDEKTDALFHEFLRHDPHFDDAPRHRTRAHPHTHARKQWQQRGRQHSDPGGARAATPPGVARPTRAPLRRGDSVDCPPEGRALPITGDDPSIPVIEEEPGGGGGGCPGSGLCVEPAGALLDKLAASLDERLFSPRLAEPVASSQVLIVAAAAPTSPDHSPA

name	Cbarp (ENSMUSG00000035640) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS56734.1 RefSeq_mRNA_predicted:XM_006512965.2 RefSeq_mRNA_predicted:XM_006512968.2 RefSeq_mRNA_predicted:XM_006512969.1 RefSeq_peptide_predicted:XP_006513028.2 RefSeq_peptide_predicted:XP_006513030.1 RefSeq_peptide_predicted:XP_006513031.1 RefSeq_peptide_predicted:XP_006513032.1 Vega_transcript:Dos-001 Vega_transcript:OTTMUST00000045735 Uniprot/SPTREMBL:E9QP85 UCSC:uc011xim.1 EMBL:AC159999 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cbarp-001 Vega_translation:208067 Vega_translation:OTTMUSP00000020597 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000020597 OTTT:OTTMUST00000045735 UniParc:UPI0000F22154
definition	note : transcript_id=ENSMUST00000105369 protein_id : ENSMUSP00000101008 translation : MQPTATMATAAATTATVALTTSWDNATSRPTAEPDPILDNYVLLVVVMSLFVGGTLVVLSGVLLLCKRCWEVHQRFNRAMEEAEKTTTTYLDNGTHPIQDPDCRGEDPEGQDTETERFLATSSTGRRVSFNEAALFEQSRKAQDKGRRYTLTEGDFHHLKNARLTHLHLPPLKIATIHECDSGEASAAATPHPATTSKDSLAIFQPPGKTLTGHSVGPSSALPGGPYNSVDFSEISPSTSSDSGEGISLDAGTRGAKAAGPETVPGEMGTGSSGSGTVLQFFTRLRRHASLDGASPYFKVKKWKLEPSQRASSLDTRGSPKRHHFQRQRAASESMEQEGDVPHADFIQYIASAGDSVAFPPPRPFLASPTSPPPTLGRLEAAEAAGGASPETPPEHGISLGPEHAQQQDPQQEQDAEHAQCSYRDLWSLRASLELHAATASDHSSSGNDRDSVRSGDSSGSGSGGGGAAPAFPPPPESPPALRPKDGEARRLLQMDSGYASIEGRGAGDEVSELPAPARSPPRSPRAWPRRPRRDYSIDEKTDALFHEFLRHDPHFDDAPRHRTRAHPHTHARKQWQQRGRQHSDPGGARAATPPGVARPTRAPLRRGDSVDCPPEGRALPITGDDPSIPVIEEEPGGGGGGCPGSGLCVEPAGALLDKLAASLDERLFSPRLAEPVASSQVLIVAAAAPTSPDHSPA

name	Cbarp (ENSMUSG00000035640) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Dos-002 Vega_transcript:OTTMUST00000045736 Uniprot/SPTREMBL:E9Q6U0 EMBL:AC159999 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cbarp-002 Vega_translation:208068 Vega_translation:OTTMUSP00000051854 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000051854 OTTT:OTTMUST00000045736 UniParc:UPI0001F794AC
definition	note : transcript_id=ENSMUST00000147778 protein_id : ENSMUSP00000130389 translation : MQPTATMATAAATTATVALTTSWDNATSRPTAEPDPILDNYVLLVVVMSLFVGGTLVVLSGVLLLCKRCWEVHQRFNRAMEEAEKTTTTYLDNGTHPIQDWAQFESDSSLFP

name	Cbarp (ENSMUSG00000035640) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Dos-003 Vega_transcript:OTTMUST00000045737 Uniprot/SPTREMBL:E9Q6U0 EMBL:AC159999 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cbarp-003 Vega_translation:208069 Vega_translation:OTTMUSP00000051855 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000051855 OTTT:OTTMUST00000045737 UniParc:UPI0001F794AC
definition	note : transcript_id=ENSMUST00000132523 protein_id : ENSMUSP00000128980 translation : MQPTATMATAAATTATVALTTSWDNATSRPTAEPDPILDNYVLLVVVMSLFVGGTLVVLSGVLLLCKRCWEVHQRFNRAMEEAEKTTTTYLDNGTHPIQDWAQFESDSSLFP

name	Cbarp (ENSMUSG00000035640) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Dos-005 Vega_transcript:OTTMUST00000045739 Uniprot/SPTREMBL:E9Q5J1 EMBL:AC159999 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cbarp-005 Vega_translation:208070 Vega_translation:OTTMUSP00000051856 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000051856 OTTT:OTTMUST00000045739 UniParc:UPI0001F794AD
definition	note : transcript_id=ENSMUST00000123967 protein_id : ENSMUSP00000125962 translation : MQPTATMATAAATTATVALTTSWDNATSRPTGHGGSREDHHYLSGQRHPPYTRLGAVRVRLISVSLTPRRRPRLQGGRPRGPGHRNRALPSHQLHRPPRVLQRGCPV

name	Cbarp (ENSMUSG00000035640) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Dos-013 Vega_transcript:OTTMUST00000045848 Uniprot/SPTREMBL:D3YXP8 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cbarp-013 Vega_translation:208071 Vega_translation:OTTMUSP00000020655 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000020655 OTTT:OTTMUST00000045848 UniParc:UPI0000F22158
definition	note : transcript_id=ENSMUST00000142853 protein_id : ENSMUSP00000115009 translation : MQPTATMATAA

name
type	STS
link
xref	UniSTS_NUM:158764 UniSTS:Stk11
definition	note : map_weight=1 standard_name : Stk11

name
type	misc_feature
link
xref
definition	note : contig AC159999.6 49239..216489(1)

name	Cbarp (ENSMUSG00000035640)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000045746 Vega_transcript:OTTMUST00000045746 MGI_trans_name:Cbarp-012 OTTT:OTTMUST00000045746
definition	note : retained_intron note : transcript_id=ENSMUST00000146180

name	Cbarp (ENSMUSG00000035640)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000045745 Vega_transcript:OTTMUST00000045745 MGI_trans_name:Cbarp-011 OTTT:OTTMUST00000045745
definition	note : retained_intron note : transcript_id=ENSMUST00000132317

name	Cbarp (ENSMUSG00000035640)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000045743 Vega_transcript:OTTMUST00000045743 MGI_trans_name:Cbarp-009 OTTT:OTTMUST00000045743
definition	note : processed_transcript note : transcript_id=ENSMUST00000149242

name	Cbarp (ENSMUSG00000035640)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000045742 Vega_transcript:OTTMUST00000045742 MGI_trans_name:Cbarp-008 OTTT:OTTMUST00000045742
definition	note : processed_transcript note : transcript_id=ENSMUST00000128488

name	Cbarp (ENSMUSG00000035640)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000045738 Vega_transcript:OTTMUST00000045738 MGI_trans_name:Cbarp-004 OTTT:OTTMUST00000045738
definition	note : processed_transcript note : transcript_id=ENSMUST00000128465

name	Cbarp (ENSMUSG00000035640)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000045741 Vega_transcript:OTTMUST00000045741 MGI_trans_name:Cbarp-007 OTTT:OTTMUST00000045741
definition	note : retained_intron note : transcript_id=ENSMUST00000136260

name	Cbarp (ENSMUSG00000035640)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000045740 Vega_transcript:OTTMUST00000045740 MGI_trans_name:Cbarp-006 OTTT:OTTMUST00000045740
definition	note : retained_intron note : transcript_id=ENSMUST00000127515

name	Cbarp (ENSMUSG00000035640)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000045744 Vega_transcript:OTTMUST00000045744 MGI_trans_name:Cbarp-010 OTTT:OTTMUST00000045744
definition	note : processed_transcript note : transcript_id=ENSMUST00000138776

name	Atp5d (ENSMUSG00000003072)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000045799 Vega_transcript:OTTMUST00000045799 MGI_trans_name:Atp5d-001 OTTT:OTTMUST00000045799
definition	note : processed_transcript note : transcript_id=ENSMUST00000150347

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cbarp (ENSMUSG00000035640)
Transcript ID	ENSMUST00000123967

Reports
substitution
cSNPs	0
Insertion	4
Deletion	4
SNPs	+1kb 80140159(c.-2779C>G), 80140437(c.-3057G>A), 80140472(c.-3092T>C), 80140965(c.-3585C>T), 80140986(c.-3606A>G), 80140993(c.-3613G>T), 80141215(c.-3835C>T), 80142309(c.-4929C>G), 80142328(c.-4948G>C), 80142432(c.-5052G>A), 80142621(c.-5241G>T), 80142657(c.-5277T>C), 80143418(c.-6038C>T), 80143955(c.-6575T>C), 80144000(c.-6620C>T), 80144101(c.-6721A>C), 5'UTR CDS 3'UTR INTRON 80135304(c.206-58G>A), 80136036(c.33+314C>T), 80136152(c.33+198T>C), 80136188(c.33+162T>A), 80137262(c.93+26G>C), 80137853(c.-7-466A>G), 80138495(c.-8+591G>A), 80138935(c.-8+151C>T), 80139061(c.-8+25C>T), -1kb 80130600(c.5783C>T), 80130744(c.5639C>T), 80130927(c.5456A>T), 80130928(c.5455A>G), 80130938(c.5445G>T), 80130939(c.5444T>A), 80131067(c.5316C>T), 80131714(c.4669C>T), 80131717(c.4666T>C), 80131849(c.4534A>G), 80131870(c.4513C>A), 80132179(c.4204C>T), 80132434(c.3949G>C), 80132510(c.3873C>T), 80132644(c.3739A>G), 80132765(c.3618C>T), 80133057(c.3326C>A), 80133255(c.3128C>T), 80133275(c.3108C>T), 80133821(c.2562C>T), 80133845(c.2538C>T), 80134223(c.2160T>C), 80134706(c.1677C>T), 80134715(c.1668G>A), 80134793(c.1590T>A), 80134978(c.1405A>C),
Insertions	+1kb 80143270 (c.-5891dupA), 5'UTR CDS 3'UTR INTRON 80138501 (c.-8+583_-8+584dupGG), -1kb 80130441 (c.5941dupA), 80133768 (c.2611_*2614dupAGGG),
Deletions	+1kb 80140606 (c.-3229_-3227delCCC), 80144140 (c.-6761delG), 5'UTR CDS 3'UTR INTRON 80137600 (c.-7-216_-7-214delTGG), -1kb 80130166 (c.6210_6216delTAGGAGC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000123967)	MQPTATMATAAATTATVALTTSWDNATSRPTGHGGSREDHHYLSGQRHPPYTRLGAVRVR LISVSLTPRRRPRLQGGRPRGPGHRNRALPSHQLHRPPRVLQRGCPV*
MSMv4 transcript	MQPTATMATAAATTATVALTTSWDNATSRPTGHGGSREDHHYLSGQRHPPYTRLGAVRVR LISVSLTPRRRPRLQGGRPRGPGHRNRALPSHQLHRPPRVLQRGCPV*
homology	100.00 (108 / 108)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cbarp (ENSMUSG00000035640)
Transcript ID	ENSMUST00000123967


..........CTGACCCTGGGTTCGAACCGAGGCACCACCGGGAAGAGAACTGTCTGCAA
GTGGAAGGAGTTATAAGGTATGGATCATTCCATAACAGACCTCTATGGATGCAAGTTTAA
ATGTTATTACATTCATTTAGTTAGTGGGCAAGGGGATAGCAAATCTTTGGGTGTCAAAGG
ACAACTTGTGAGGGGAGGCACTCTTCCTTTCCTATTCGGGACTGAGGGATGAAACATGGC
TGCTTGGGCTCGGCCGCAGGTACCTTAGTTTGCTCAGCTCTTTCACTACAGTTCTCTTGT
TTGAGAAGGGGTCTTGTGCTGCTCAGGCTGGCCTAGAATTCTGTGTAGCTGAGGTTGACC
TTGCGCTCCTGATCCACTTGATTTCACCTTACAAATGCAGGTGTGCGGGACCATCACAGT
TCTGAGGGCAAGTTCCCAGTAGGTGTTTTACAGCACTGGCTATCTGCTGGACCCATAAAG
GAACCTGCCAAAGAGCAGCATAAAAGAAAAACATGCAAGTGGGGATGGGGATGTACCTAT
ATCTCATGGCTTGTAAACCAAGGGGATATGCAAACTGGAATTGCACATCTGGAGTGGCAG
GTGACAAACTAGATAGTTGAGGGTCCCAGAGACCTGAGATACCCGCGTTAGCTTAGGGGC
GTAATGCGCCCCGCCCGCACCGGGTTCTGGGACATTGCAGCACCAGGTAGGCTGAGTCGT
GCAGGGGTGAGGGGGGCGGGACTGCGCTACAGCGGGAGGGGGCGCGGGAGCTCAGGCTCC
GCCCCACGCCCCCGCCGGAAGGGAAGGGGAGGCGGTGGCCATCGCAGTGCGAGCCAGACG
CGGCGGCGAGAGCGGCGGGGGCGGTCAGGCTGCGGGACCGGGCGGTTACCGGGTGCACAG
AGCCAGGGGCCGGAGCGGGAGCACCGCCAACGCGGTCACGTGCGCGGCCCCACCTCTCCT
GCGCGCCTCCCCCGTGCGCTGCTCTCCCCATTCATAAATTCTCCGTCGGC
TCCGCGGCCACCGAGCTCCAGAGCCAACCGGGAGAGCCGTGTATCTGCCGCCCGCCCTCCCGCCGCCCATGGGCCGCACGCCCCGGCGCTGAG
GTAGGCGCGGCGGGCCCTGGCGCAT..........AGCTGGCTCTATGCCCTACTTGTAG
CCTCAAAATGCAGCCCACGGCCACCATGGCCACAGCGGCCGCCACTACCGCCACTGTTGCCCTGACGACTTCGTGGGACAATGCCACCAGCCGCCCCACG
GTGGGTTGGGTGACTCCTGGAGACT..........ACTCTTCTTCCCCTTTCTTCCTCAG
GGCCATGGAGGAAGCAGAGAAGACCACCACTACTTATCTGGACAACGGCACCCACCCTATACAAG
GTGAGGGGCCCGCGCGGCTTGCAGC..........TCTGTCTGTCTGTCTCCCCCACCAG
ACTGGGCGCAGTTCGAGTCCGACTCATCTCTGTTTCCTTAACGCCCAGGCGTAG
GTGCGCACAGGCGCGTGCTGAGAGC..........CACCCTCTCTTGGCTCTCCTCACAG
ACCCCGACTGCAGGGGGGAAGACCCCGAGGGCCAGGACACCGAAACAGAGCGCTTCCTAGCCACCAGCTCCACCGGCCGCCGCGTGTCCTTCAACGAGGCTGCCCTGTTTGAACAGAGCCGCAAGGCTCAGGACAAGGGCCGCCG
GTGAGAGAAGTCAGGGGGAGGTCAC..........CTGACTGCTGGGGTCCCCAACATAG
GTACACCCTGACAGAAGGGGATTTCCATCACCTCAAGAATGCCCGCCTCACCCACCTCCACCTACCGCCCCTCAAAATCGCTACTATCCATGAGTGTGATTCGGGGGAGGCCAGTGCAGCGGCCACACCCCACCCAGCTACCACCTCCAAGGACAGCTTGGCTATTTTCCAG
GTGAGGTCAAGGTTACAGCTGCCTG..........CCCTCACCAACCTCTCTGTTCACAG
CCCCCTGGGAAAACCCTCACCGGCCACTCAGTCGGCCCCAGCTCCGCCCTGCCAGGAGGTCCCTACAACTCCGTGGACTTCTCAGAGAT
CAGCCCCTCAACCTCCAGTGACTCTGGGGAGGGCATTTCGGTGAGGGTTCCCTCTGGTGT
CCCTACAGTATCCCAAGATCTTGGTGACTTCTTTCTCAGAACCACTCTGCTCCCAGACCA
TGGTACTTTAGGATTCCCTGTAAGAGCCAGGCTGGTGGGAAGAGTGGACAGCTTCACTTC
AAGCCCAAGGAACAGAACTTGTAGGCAGGATCCTTCCCCCGTGAAAGGCAGGATTCAGGG
CAGGATGGCAGAGCTGGCTTGAGAAGGGTTGCCAGAAGGGAGTGGCCAAAGGCACACTTC
ATGGGGACCCAGGGATTGGGCCAGGGCCTGCTGGGGAGGGGATCCCGTTCCTGCCTGACA
GTTAACCCTACTTCCCCCCACCTCTCCAGTTAGATGCAGGTACCCGGGGTGCCAAGGCTG
CTGGGCCTGAAACAGTGCCTGGAGAGATGGGTACAGGCTCCTCCGGGTCGGGCACTGTTT
TGCAATTCTTCACTCGGCTACGCCGACATGCCAGCCTGGATGGAGCCAGCCCCTACTTCA
AGGTCAAGAAATGGAAGCTGGAGCCCAGCCAGAGAGCGTCCAGTCTGGACACGAGAGGTA
AGGCATTCCAGAGTGACTATGACCTCCAGGGGCCATCTTGATGGAGGCCTCTCAAATGGC
CAGGGACTCCCAGGGCCTGAATGTCTCTAGGAAAGCTGTCAGTTGCTGGTACCCTGTCTC
TTAGGCACATGACCATCCTGTCACCGGTGCTCCAAGGCCCCCGGGGTGCTCAGAGCTGGT
GTGGTCCCCCCTTCATCCATCAGCACACCGATCCCCTAGCTCCCTGGACCTCCACCTGGT
CCTTTTGCCTGTATGACTTTGAGTTGTTGAAACAAGCCATTGGGATAGAGGACCGCGCCA
GCCTGCGTGAAGCCGAGGCTCCCTCTCCAGTGTTCTGGTGCACATTCCCAGTACATGGAA
GGGCAGCAGTTGGAGGACAAGAGCTCATTGCCAGCCTCAG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CTGACCCTGGGTTCGAACCGAGGCACCACCGGGAAGAGAACTGTCTGCAA GTGGAAGGAGTTATAAGGTATGGATCATTCCATAACAGACCTCTATGGATGCAAGTTTAA ATGTTATTACATTCATTTAGTTAGTGGGCAAGGGGATAGCAAATCTTTGGGTGTCAAAGG ACAACTTGTGAGGGGAGGCACTCTTCCTTTCCTATTCGGGACTGAGGGATGAAACATGGC TGCTTGGGCTCGGCCGCAGGTACCTTAGTTTGCTCAGCTCTTTCACTACAGTTCTCTTGT TTGAGAAGGGGTCTTGTGCTGCTCAGGCTGGCCTAGAATTCTGTGTAGCTGAGGTTGACC TTGCGCTCCTGATCCACTTGATTTCACCTTACAAATGCAGGTGTGCGGGACCATCACAGT TCTGAGGGCAAGTTCCCAGTAGGTGTTTTACAGCACTGGCTATCTGCTGGACCCATAAAG GAACCTGCCAAAGAGCAGCATAAAAGAAAAACATGCAAGTGGGGATGGGGATGTACCTAT ATCTCATGGCTTGTAAACCAAGGGGATATGCAAACTGGAATTGCACATCTGGAGTGGCAG GTGACAAACTAGATAGTTGAGGGTCCCAGAGACCTGAGATACCCGCGTTAGCTTAGGGGC GTAATGCGCCCCGCCCGCACCGGGTTCTGGGACATTGCAGCACCAGGTAGGCTGAGTCGT GCAGGGGTGAGGGGGGCGGGACTGCGCTACAGCGGGAGGGGGCGCGGGAGCTCAGGCTCC GCCCCACGCCCCCGCCGGAAGGGAAGGGGAGGCGGTGGCCATCGCAGTGCGAGCCAGACG CGGCGGCGAGAGCGGCGGGGGCGGTCAGGCTGCGGGACCGGGCGGTTACCGGGTGCACAG AGCCAGGGGCCGGAGCGGGAGCACCGCCAACGCGGTCACGTGCGCGGCCCCACCTCTCCT GCGCGCCTCCCCCGTGCGCTGCTCTCCCCATTCATAAATTCTCCGTCGGC
1	EXON 1	80139086	80139178	-	-	93	TCCGCGGCCACCGAGCTCCAGAGCCAACCGGGAGAGCCGTGTATCTGCCGCCCGCCCTCC CGCCGCCCATGGGCCGCACGCCCCGGCGCTGAG
	INTRON 1 - 2	80137388	80139085			1698	GTAGGCGCGGCGGGCCCTGGCGCAT..........AGCTGGCTCTATGCCCTACTTGTAG
2	EXON 2	80137288	80137387	-	0	100	CCTCAAAATGCAGCCCACGGCCACCATGGCCACAGCGGCCGCCACTACCGCCACTGTTGC CCTGACGACTTCGTGGGACAATGCCACCAGCCGCCCCACG
	INTRON 2 - 3	80136939	80137287			349	GTGGGTTGGGTGACTCCTGGAGACT..........ACTCTTCTTCCCCTTTCTTCCTCAG
3	EXON 3	80136874	80136938	0	2	65	GGCCATGGAGGAAGCAGAGAAGACCACCACTACTTATCTGGACAACGGCACCCACCCTAT ACAAG
	INTRON 3 - 4	80136744	80136873			130	GTGAGGGGCCCGCGCGGCTTGCAGC..........TCTGTCTGTCTGTCTCCCCCACCAG
4	EXON 4	80136690	80136743	2	2	54	ACTGGGCGCAGTTCGAGTCCGACTCATCTCTGTTTCCTTAACGCCCAGGCGTAG
	INTRON 4 - 5	80136495	80136689			195	GTGCGCACAGGCGCGTGCTGAGAGC..........CACCCTCTCTTGGCTCTCCTCACAG
5	EXON 5	80136350	80136494	2	-	145	ACCCCGACTGCAGGGGGGAAGACCCCGAGGGCCAGGACACCGAAACAGAGCGCTTCCTAG CCACCAGCTCCACCGGCCGCCGCGTGTCCTTCAACGAGGCTGCCCTGTTTGAACAGAGCC GCAAGGCTCAGGACAAGGGCCGCCG
	INTRON 5 - 6	80135547	80136349			803	GTGAGAGAAGTCAGGGGGAGGTCAC..........CTGACTGCTGGGGTCCCCAACATAG
6	EXON 6	80135375	80135546	-	-	172	GTACACCCTGACAGAAGGGGATTTCCATCACCTCAAGAATGCCCGCCTCACCCACCTCCA CCTACCGCCCCTCAAAATCGCTACTATCCATGAGTGTGATTCGGGGGAGGCCAGTGCAGC GGCCACACCCCACCCAGCTACCACCTCCAAGGACAGCTTGGCTATTTTCCAG
	INTRON 6 - 7	80135247	80135374			128	GTGAGGTCAAGGTTACAGCTGCCTG..........CCCTCACCAACCTCTCTGTTCACAG
7	EXON 7	80135158	80135246	-	-	89	CCCCCTGGGAAAACCCTCACCGGCCACTCAGTCGGCCCCAGCTCCGCCCTGCCAGGAGGT CCCTACAACTCCGTGGACTTCTCAGAGAT
	3' upstream sequence						CAGCCCCTCAACCTCCAGTGACTCTGGGGAGGGCATTTCGGTGAGGGTTCCCTCTGGTGT CCCTACAGTATCCCAAGATCTTGGTGACTTCTTTCTCAGAACCACTCTGCTCCCAGACCA TGGTACTTTAGGATTCCCTGTAAGAGCCAGGCTGGTGGGAAGAGTGGACAGCTTCACTTC AAGCCCAAGGAACAGAACTTGTAGGCAGGATCCTTCCCCCGTGAAAGGCAGGATTCAGGG CAGGATGGCAGAGCTGGCTTGAGAAGGGTTGCCAGAAGGGAGTGGCCAAAGGCACACTTC ATGGGGACCCAGGGATTGGGCCAGGGCCTGCTGGGGAGGGGATCCCGTTCCTGCCTGACA GTTAACCCTACTTCCCCCCACCTCTCCAGTTAGATGCAGGTACCCGGGGTGCCAAGGCTG CTGGGCCTGAAACAGTGCCTGGAGAGATGGGTACAGGCTCCTCCGGGTCGGGCACTGTTT TGCAATTCTTCACTCGGCTACGCCGACATGCCAGCCTGGATGGAGCCAGCCCCTACTTCA AGGTCAAGAAATGGAAGCTGGAGCCCAGCCAGAGAGCGTCCAGTCTGGACACGAGAGGTA AGGCATTCCAGAGTGACTATGACCTCCAGGGGCCATCTTGATGGAGGCCTCTCAAATGGC CAGGGACTCCCAGGGCCTGAATGTCTCTAGGAAAGCTGTCAGTTGCTGGTACCCTGTCTC TTAGGCACATGACCATCCTGTCACCGGTGCTCCAAGGCCCCCGGGGTGCTCAGAGCTGGT GTGGTCCCCCCTTCATCCATCAGCACACCGATCCCCTAGCTCCCTGGACCTCCACCTGGT CCTTTTGCCTGTATGACTTTGAGTTGTTGAAACAAGCCATTGGGATAGAGGACCGCGCCA GCCTGCGTGAAGCCGAGGCTCCCTCTCCAGTGTTCTGGTGCACATTCCCAGTACATGGAA GGGCAGCAGTTGGAGGACAAGAGCTCATTGCCAGCCTCAG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cbarp (ENSMUSG00000035640)
Transcript ID	ENSMUST00000123967

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 108 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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