MoG+ -Mouse Genome database with high added value-

Tutorials are available here.

BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Cbarp (ENSMUSG00000035640)

Cross Reference

GO	GO:0003674, GO:0005575, GO:0008150
goslim_goa	GO:0003674, GO:0005575, GO:0008150
MGI_trans_name	Cbarp-013
OTTP	OTTMUSP00000020655
OTTT	OTTMUST00000045848
UniParc	UPI0000F22158
Uniprot/SPTREMBL	D3YXP8
Vega_transcript	Dos-013, OTTMUST00000045848
Vega_translation	208071, OTTMUSP00000020655

Definition

protein_id:ENSMUSP00000115009
translation:

MQPTATMATAA

Chromosome

10

Length
Position(start - end)

32
80137347 - 80137380

Orient to Chromosome

minus

Link

Location : (10:80137347-80137380)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Cbarp (ENSMUSG00000035640)
Transcript ID	ENSMUST00000142853

Reports
substitution
cSNPs	0
Insertion	3
Deletion	3
SNPs	+1kb 80140965(c.-3585C>T), 80140986(c.-3606A>G), 80140993(c.-3613G>T), 80141215(c.-3835C>T), 80142309(c.-4929C>G), 80142328(c.-4948G>C), 80142432(c.-5052G>A), 80142621(c.-5241G>T), 80142657(c.-5277T>C), 80143418(c.-6038C>T), 80143955(c.-6575T>C), 80144000(c.-6620C>T), 80144101(c.-6721A>C), 80144598(c.-7218C>A), 80144684(c.-7304G>C), 80144978(c.-7598C>G), 80145571(c.-8191C>T), 5'UTR 80140437(c.-65G>A), 80140472(c.-100T>C), CDS 3'UTR INTRON 80137853(c.-7-466A>G), 80138495(c.-7-1108G>A), 80138935(c.-8+1445C>T), 80139061(c.-8+1319C>T), 80140159(c.-8+221C>G), -1kb 80132434(c.4913G>C), 80132510(c.4837C>T), 80132644(c.4703A>G), 80132765(c.4582C>T), 80133057(c.4290C>A), 80133255(c.4092C>T), 80133275(c.4072C>T), 80133821(c.3526C>T), 80133845(c.3502C>T), 80134223(c.3124T>C), 80134706(c.2641C>T), 80134715(c.2632G>A), 80134793(c.2554T>A), 80134978(c.2369A>C), 80135304(c.2043G>A), 80136036(c.1311C>T), 80136152(c.1195T>C), 80136188(c.1159T>A), 80137262(c.*85G>C),
Insertions	+1kb 80143270 (c.-5891dupA), 5'UTR CDS 3'UTR INTRON 80138501 (c.-7-1116_-7-1115dupGG), -1kb 80133768 (c.3575_3578dupAGGG),
Deletions	+1kb 80144140 (c.-6761delG), 5'UTR 80140606 (c.-237_-235delCCC), CDS 3'UTR INTRON 80137600 (c.-7-216_-7-214delTGG), -1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000142853)	MQPTATMATAA
MSMv4 transcript	MQPTATMATAA
homology	100.00 (11 / 11)

Exon Detail Report

Gene Symbol (Gene ID)	Cbarp (ENSMUSG00000035640)
Transcript ID	ENSMUST00000142853

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GACAGCCAACAGCCAGGATTATACAGAAAAATCCTATCTCGAAACACACA CACACACACACACACACACACACACACACACACATATATATATATGCATATGCCAGGCGC AGTTAATCCCAACTCCCCGGAGGAAGACTCAAGCGGGGCTCCATGAGTTTGAGACCAACC AGGACTACATCATGAGAAGCTGCTAAATAAATAATTAAATTTCATGATGCCCGCTGCGGT GCGTGCTGGGGAGAGGTCGTGCCAGGAAAGAAGTGCACCGGATGGCGGCAGAGGGCGCGC GAAACCTGGAGATGTACTCGCTCTTCTCCGCAGTCCCCTCCCTGCGGGCCTCCGCCCCTG CGTGCCACTGACGCAGGAGCCCGTGCGCAGGCGGCCAAGGGGCCCCACTGACGCCAGTCT TGTCCGCGCAGCCTCGCTCTCGGTCATGACGTCATCACCCTGCCCCCGCACTCACGCAGG TTCCGGCCTCCGCTCAGCTCTTGGTCCCCATGCCCCACCACGTAGGTTCACAGAAAATGC AGGCATAGGCTTGATGGGGCAAACAGAAGGAAAGCCATTAGCTTTGTTGGATCTTAGAGG AGCAGCTGGCAGCTAGAGGGTCGTGGTCACTCTTGAACCAGAGCCTGGCAGATGCAAGAC TACAAGCTAGACTACAAACTTATTCTACTAACTAGAGACTCTGGCACGCAGACCTGCTCA AAAGCCAGCAGTCCTGGCCTTAATCAATCTCTATGAGAGACACCTAGTTCCCAGTCTCTA TAATCTGGACAGTTTCCCTGGGCAGTGGGCAGCTAGAAACCCCATTCCCTTCCCTACTCC AGCTCTTAAACATATACACGCGCGCGCGCGCACACACACATACACACACACACACACACA CACACACACACACACACCCATACCCGTCCCAGGATCCCATATCTACTCAAATGCTCCATG AAGTAAGAACTCAACGCTAGAAAGATCATGCTTGTCCGGTGGTGAGTGTC
1	EXON 1	80140380	80140835	-	-	456	CTCTTCCTACCCCCATGGCCACTGTGCCTTACCAGACAAGTCTTCTAAAAACTAAACCTA GGGTGCTGGAGAGATAGTTCAGAGATCAGCAACGAGCACTGTTCTTCCAAGAGACGTGTG CTTCATTCTCAGTGCCCATGGGGGACAGCTAACAGTTGCCTGTAGCTTCAGAAGATCTGA CATCCTCCTCTGACCTTCAAAGGCATGTAAATTCACGACCCCCCCCCCCAGAATATTTAG TATTTGGAAAATCCATGTGTTCTGACACACTCATGAGCTTGAGACCAACCTGGTTGGGTT CGGAAGTCTATCCTGGTAGTGCAGGCCAGCCTCGGGTCTGTGGATTAATCCCCTTCACTG AAACGAAAAGGAGGATGGTGTCCTGGAAGTCAGTGTAAACGACCCACCTTCATGATGACA CTTATTTGACTGTGTGGCCAAGCAGGGAATAAGCAG
	INTRON 1 - 2	80137388	80140379			2992	GTATGGTCTGGGAGCATAGGCTCTT..........AGCTGGCTCTATGCCCTACTTGTAG
2	EXON 2	80137347	80137387	-	-	41	CCTCAAAATGCAGCCCACGGCCACCATGGCCACAGCGGCCG
	3' upstream sequence						CCACTACCGCCACTGTTGCCCTGACGACTTCGTGGGACAATGCCACCAGCCGCCCCACGG TGGGTTGGGTGACTCCTGGAGACTCGGGGTAGAGGTGGGATGGAAACCCCACTCTGCGGT GGAGCCCTGACATGCCCCGCCCTGTGCACTCAACCCCGACTCAGGCGGAGCCTGACCCCA TCTTGGACAACTATGTGCTGCTGGTGGTGGTGATGTCGCTGTTCGTTGGAGGCACGCTGG TGGTGCTGTCTGGCGTTCTTCTGCTCTGCAAACGCTGCTGGGAGGTGCACCAGCGCTTCA ACAGGTGCTTGTCCTGGGAACCACTTGACACATGCCCAGGCGCGCTTGCAGAGCCTCAGA GTGGAGACGCCCCATTCCTGCTCACTCTTCTTCCCCTTTCTTCCTCAGGGCCATGGAGGA AGCAGAGAAGACCACCACTACTTATCTGGACAACGGCACCCACCCTATACAAGGTGAGGG GCCCGCGCGGCTTGCAGCACCCCTAGCTGCACTTGACTGTGCCTCCCGCCGCGCCCCACC CCTCGGCCCCCTGCCCGCCCCCTCGGGCCGCCTGACGGTCTGTCTGTCTGTCTCCCCCAC CAGACTGGGCGCAGTTCGAGTCCGACTCATCTCTGTTTCCTTAACGCCCAGGCGTAGGTG CGCACAGGCGCGTGCTGAGAGCGAGTGAGTGTGTGAGCGGATGAGCGAGTGCCCGCCGCC CCGCCCAGCCCGCCCCGTCCTGCCCTCACTCGGCCCGTGCCCCCCTCCCAGCCCACCCCG CCCAGCGGCCTGCCTGGCAGCCAGACACGCGCGGCCCACCCCGGGCCCACCCTCTCTTGG CTCTCCTCACAGACCCCGACTGCAGGGGGGAAGACCCCGAGGGCCAGGACACCGAAACAG AGCGCTTCCTAGCCACCAGCTCCACCGGCCGCCGCGTGTCCTTCAACGAGGCTGCCCTGT TTGAACAGAGCCGCAAGGCTCAGGACAAGGGCCGCCGGTG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cbarp (ENSMUSG00000035640)
Transcript ID	ENSMUST00000142853

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 11 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information