MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Rnf44 (ENSMUSG00000034928)

Cross Reference

EMBL	AC162526
GO	GO:0003674, GO:0005575, GO:0008150
goslim_goa	GO:0003674, GO:0005575, GO:0008150
MGI_trans_name	Rnf44-007
OTTP	OTTMUSP00000043453
OTTT	OTTMUST00000081281
UniParc	UPI0001889CF8
Uniprot/SPTREMBL	D3Z6V1
Vega_transcript	OTTMUST00000081281, Rnf44-007
Vega_translation	214513, OTTMUSP00000043453

Definition

protein_id:ENSMUSP00000122292
translation:

MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLP
RPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFP
LPTSQHIPGCSAQQLPACSVMFSGQHYPLC

Chromosome

13

Length
Position(start - end)

833
54683610 - 54684444

Orient to Chromosome

minus

Link

Location : (13:54683610-54684444)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Rnf44 (ENSMUSG00000034928)
Transcript ID	ENSMUST00000125927

Reports
substitution
cSNPs	1
Insertion	4
Deletion	7
SNPs	+1kb 54688356(c.-3912C>T), 54688392(c.-3948A>G), 54688393(c.-3949C>A), 54688611(c.-4167T>C), 54688816(c.-4372T>G), 54688997(c.-4553T>A), 54689447(c.-5003G>A), 54689558(c.-5114C>T), 54689643(c.-5199C>T), 54689733(c.-5289A>G), 54690088(c.-5644C>A), 54690741(c.-6297C>T), 54690914(c.-6470G>C), 54691144(c.-6700A>G), 54691444(c.-7000T>C), 54691462(c.-7018G>A), 54691539(c.-7095G>A), 54691687(c.-7243A>C), 54692048(c.-7604G>C), 54692193(c.-7749G>A), 5'UTR CDS 54683703(c.357C>T), 3'UTR INTRON 54683880(c.297+81T>G), 54683886(c.297+75A>G), 54684202(c.108-52T>C), 54684213(c.108-63T>C), 54684321(c.107+17A>C), 54684550(c.-44-62A>C), 54684670(c.-44-182A>G), 54684754(c.-44-266T>C), 54684823(c.-44-335G>T), 54685089(c.-44-601A>G), 54685272(c.-44-784A>G), 54685287(c.-44-799A>G), 54685343(c.-44-855A>G), 54685723(c.-44-1235A>G), 54685755(c.-44-1267G>A), 54685917(c.-44-1429T>C), 54686177(c.-44-1689C>T), 54686222(c.-44-1734G>C), 54686726(c.-45+1305A>G), 54686751(c.-45+1280G>A), 54686776(c.-45+1255A>G), 54687126(c.-45+905C>T), 54687360(c.-45+671C>T), 54687833(c.-45+198G>A), 54687974(c.-45+57A>T), -1kb 54678631(c.4979C>A), 54678657(c.4953A>G), 54679882(c.3728C>T), 54680085(c.3525C>T), 54680979(c.2631T>G), 54681167(c.2443C>T), 54681208(c.2402G>A), 54682076(c.1534G>A), 54682281(c.1329T>G), 54682306(c.1304G>A),
Insertions	+1kb 54689069 (c.-4629_-4626dupCAAA), 5'UTR CDS 3'UTR INTRON 54686907 (c.-45+1123_-45+1124insTCCTTTA), -1kb 54678670 (c.4939_4940insGAGAG), 54679161 (c.4448_4449insGGCTGGC),
Deletions	+1kb 54688680 (c.-4238_-4237delGG), 54689191 (c.-4748delA), 54690229 (c.-5786delC), 5'UTR CDS 3'UTR INTRON 54684694 (c.-44-215_-44-207delAGCTGGCCC), 54685736 (c.-44-1255_-44-1249delGTGTGTC), -1kb 54679779 (c.3829_3830delAC), 54683347 (c.257_262delTGGCAG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	54683703 (p.Phe119Phe),
non-synonymous substitutions
B6 transcript (ENSMUST00000125927)	MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLP RPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFP LPTSQHIPGCSAQQLPACSVMFSGQHYPLC
MSMv4 transcript	MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLP RPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFP LPTSQHIPGCSAQQLPACSVMFSGQHYPLC
homology	100.00 (150 / 150)

Exon Detail Report

Gene Symbol (Gene ID)	Rnf44 (ENSMUSG00000034928)
Transcript ID	ENSMUST00000125927

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AAAGAAAAATTTAAAAATCTGCCCTCCTTGCTGGGCAGTGGTGGCATAAT CCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGGCCAGCCAGGGCTATACAGAGA AACCCTGTCTCAAAAAACAAATCTGCCCTCCTGAACAGGTGCACCCTAATGAGAATTCCT GTGTCTTTTCCCAAATCACTTCCCACTGTATGCAGATACAATATTCAGTTGAAATTGATA ATATTGTTACACCTTGTTAGTAAATTGGTTTGTTTTTTAAATATTTGGGATTATGGGATG CATCCACAAAGTACAGAGTGTCACCCATCTGTAGCCACAGAGGTTTAACAAATGTTGCCA TTTTCTACTGACATCCTGTTCTGGGTTGGTGGACGCTGTAGTAGTCCAGTTACTACAGAC CGGCCTAGTAGACATGAGTGCTTTAGGTAATGGTGATGTTCTGCTTATATAATCGATGCA GACACACCATACCCCACTTTGTATGTTTGCCTGGCCGGGGGGGGGGGGGGCATCCTAAGG GGACACCGACGTCTGCCCCCTCTCTCGCCTCAGCTGTGTTACTATCTGGGTGTGTGATAC TTTTGTTGCTTGTATTTTGAAGACAAGGTCTCTGTAGCTATGTAGACCAGGCTGTTCTCG AACTATTGATCCGCCGGTCCTGGAGGAGTGACTCTTCTTTCCGGTACAGTGGCTTGCTTG TCCTGATCCCTAGGCTCTCAGTCGTTGAGAAGCTTAGAGAACTAAACTGCAGAAACCTCC CTGGGCCTGGTTCAGGAGATCCCAACTCTTCCCACTTAGGCTGAACTAGAGCCTCTCCAC CCCTTTTCCCGGGCTGCGCTAGGGGCGGGGTGCCGAGATGTTTCTGTGACGTCAGCACGC GCAAGACCAATCCCCCTACCCAGGAGACGTTAAATCATTTGCATGGCTCCTCAGTCATTG GTCTCTTCAGCCCTGGGTTGTCCCAGCTGTTTAAAGGCGCCGTCTAACGG
1	EXON 1	54688031	54688200	-	-	170	AACAGAAAGCGAGCGAGTAGAGAGGCGAGGTGAGCTATGAGGTCATCGCAGGCCTGCCGG GCTTGTGGTGACGTCATCTCCGGGAAGTGTGCTTGCCGAGCTAAGAGCGGTCCTCTCACC TCGGCTGCGTGAGAGGCTGCGTGCCCCACAGAGGCCGCGGCCCTAAGAAG
	INTRON 1 - 2	54684489	54688030			3542	GTAACCTTGACCTGTTAGTGCGTGC..........ACATCTTTCTCTAATTACCTCCTAG
2	EXON 2	54684338	54684488	-	2	151	GGTTGTGAGCCCCGGCACAGCCCCTCCACCTCCCTGCCCTCCTGATGAGACCATGGACTT TGGCAGTGACTAAGTGGCCACCTTCTGCCCCTGTGGGTCACTGGCGAGTCTCTACAAGGC TTAGCAGCAGTCCAGGCCAGCTCTGGGGAAG
	INTRON 2 - 3	54684151	54684337			187	GTAGGAAGAAGTCTCTCTCTCTTAA..........GTTGGGGCTCCTCTGTGTGGTACAG
3	EXON 3	54683961	54684150	2	0	190	CCTTGGCCACGAGGGGCCCCTGGTCAGCCCACCTGCCCAGGATGAGCGCTTACCCTCCCA GCAGCTGCTGCCCAGACCATCAAACCTCTCTGTAGAGGAGCACCGAGCCTCAGCTCCTGC CGGCAGGAGCCCCCGAATGCTGCACCCAGCCACCCAGCAGAGCCCGTTCATGGTTGATCT CCACGAACAA
	INTRON 3 - 4	54683763	54683960			198	GTAAGTACAACTACCTCACCCCCTG..........CAGTTCTCTGCTGCTCTCTCCACAG
4	EXON 4	54683610	54683762	0	-	153	GTGCACCAGGGACCTGTCCCTCTGTCCTACACGGTCACCACAGTGACAACCCAAGGCTTT CCTTTGCCTACAAGCCAACACATCCCTGGCTGCAGTGCCCAGCAGCTCCCAGCATGCTCC GTGATGTTCAGTGGGCAGCACTACCCCCTCTGC
	3' upstream sequence						TGCCTCCCACCTCCGGTGAGTGAATGACTTCTTCCACCCAGGTACAAGCCACACTGTCCA TTCCAGCAGATGTAGTCACAGGCACCCTTGGGAACTGAACCAGATGCTTGGGCAGTATAC TAACTTGGCCGCCTGCCCTGGCCCCTTCCAGAGCAACATGTGCCTGTGGGCTTCCACCCA GGTGCAAGGCAGTTTGGAGTTGAGGGACTATCTGTACCAAAGAGCCTGCTGCATGCAGTG GCAGTGGCAGTGGCAGTGGCAGAGATGCTGCAGTGGTGGTGGGACTGAGCTGCTGGAGGC CCAGGGCTAGGCATGCATAGGAACCTGTAGCTGGAAGGTGGTCCCTGGCCTGCGTGGCAA GCATAGGCCCAGCTTCTCTACCTCTCTCAGCAGCTGATCCAGGCGTGCACCATGCAGCAG CTCCCTGGGCCCTACCACACCTACCCCCACCTCATCTCCAGTGACCACTACATCCTTCAC CCACCACCGCCAGCCCCACCGCCCCAGCCTACCCACATGGCACCGCTTGGGCAGTTTGTG TCCCTGCAGACCCAGCACCCACGTATGGTAAGTGTGGGAACTGGAGGGGGAGGGGAGTGC AGAGTAGGAAGACCTGAGCTTGTTATAACCAGCTGGCTGACTGGCCTTTCCTCACTTAGC CCCTGCAGCGGCTGGATAACGAGATGGACCTTCGAGGAGACCAGCACCCCTTGGGTAGCT TCACTTACTCCACCTCTGCCACTGGCCCAGCCTTGTCGCCCTCAGTGCCCCTTCACTACC TACCCCATGATCCACTGCACCAGGAGCTGTCCTTTGGTGTGGTGAGTGGCCGTCCCTATC TGAAGCCAAGCTTGGGCAGTGGGCAGGTGGGCCTGCCAGTTGACCTGCGCTTGGTTCCCT GTGTGCAGCCATATTCCCACATGATGCCACGAAGACTGAGCACACAGAGATACCGCCTGC AACAGCCGCTGCCACCACCCCCACCGCCGCCGCCACCATC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rnf44 (ENSMUSG00000034928)
Transcript ID	ENSMUST00000125927

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 150 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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