MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Rnf44 (ENSMUSG00000034928)

Cross Reference

CCDS	CCDS49267.1
GO	GO:0003674, GO:0005575, GO:0008150, ...show all
goslim_goa	GO:0003674, GO:0043167
MGI_trans_name	Rnf44-002
OTTP	OTTMUSP00000043448
OTTT	OTTMUST00000081276
RefSeq_mRNA_predicted	XM_011244448.1
RefSeq_peptide_predicted	XP_011242750.1
UCSC	uc007qox.3
UniParc	UPI00005B2861

Uniprot/SWISSPROT	Q3UHJ8
Vega_transcript	OTTMUST00000081276, Rnf44-002
Vega_translation	214508, OTTMUSP00000043448

Definition

protein_id:ENSMUSP00000114259
translation:

MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVM
FSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPL
GQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLH
QELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGP
TISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCV
VCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE

Chromosome

Length
Position(start - end)

2264
54681749 - 54684014

Orient to Chromosome

minus

Link

Location : (13:54681749-54684014)
/

Detail Map

name	Rnf44 (ENSMUSG00000034928)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Rnf44 note : ring finger protein 44 [Source:MGI Symbol;Acc:MGI:2145310]

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000177950

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000125871

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000037422

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000134862

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000150806

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000128257

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000126717

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000129881

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000125927

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000122935

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000134177

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000145397

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000146931

name	Rnf44 (ENSMUSG00000034928)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000150626

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49266.1 Uniprot/SWISSPROT:Q3UHJ8 RefSeq_peptide:NP_598825 RefSeq_mRNA:NM_134064.2 RefSeq_mRNA_predicted:XM_011244449.1 RefSeq_mRNA_predicted:XM_011244450.1 RefSeq_mRNA_predicted:XM_011244451.1 RefSeq_peptide_predicted:XP_011242751.1 RefSeq_peptide_predicted:XP_011242752.1 RefSeq_peptide_predicted:XP_011242753.1 UCSC:uc007qot.2 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 GO:GO:0008270 MGI_trans_name:Rnf44-201 goslim_goa:GO:0003674 goslim_goa:GO:0043167 UniParc:UPI00005AD397
definition	note : transcript_id=ENSMUST00000177950 protein_id : ENSMUSP00000136732 translation : MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49268.1 RefSeq_peptide:NP_001139497 RefSeq_peptide:NP_001139498.1 RefSeq_mRNA:NM_001146025.1 RefSeq_mRNA:NM_001146026.1 RefSeq_mRNA_predicted:XM_006517018 RefSeq_mRNA_predicted:XM_006517019 RefSeq_peptide_predicted:XP_006517081.1 RefSeq_peptide_predicted:XP_006517082.1 RefSeq_peptide_predicted:XP_006517083.1 RefSeq_peptide_predicted:XP_011242748.1 RefSeq_peptide_predicted:XP_011242749.1 Vega_transcript:OTTMUST00000081275 Vega_transcript:Rnf44-001 Uniprot/SPTREMBL:E9PUC0 UCSC:uc007qov.2 EMBL:AC162526 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 GO:GO:0008270 MGI_trans_name:Rnf44-001 Vega_translation:214506 Vega_translation:OTTMUSP00000043447 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0043167 OTTP:OTTMUSP00000043447 OTTT:OTTMUST00000081275 UniParc:UPI0001889CEF
definition	note : transcript_id=ENSMUST00000125871 protein_id : ENSMUSP00000118474 translation : MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLPRPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49266.1 Uniprot/SWISSPROT:Q3UHJ8 Vega_transcript:OTTMUST00000081277 Vega_transcript:Rnf44-003 UCSC:uc007qox.3 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 GO:GO:0008270 MGI_trans_name:Rnf44-003 Vega_translation:214507 Vega_translation:OTTMUSP00000043449 goslim_goa:GO:0003674 goslim_goa:GO:0043167 OTTP:OTTMUSP00000043449 OTTT:OTTMUST00000081277 UniParc:UPI00005AD397
definition	note : transcript_id=ENSMUST00000037422 protein_id : ENSMUSP00000043974 translation : MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49267.1 Uniprot/SWISSPROT:Q3UHJ8 RefSeq_mRNA_predicted:XM_011244448.1 RefSeq_peptide_predicted:XP_011242750.1 Vega_transcript:OTTMUST00000081276 Vega_transcript:Rnf44-002 UCSC:uc007qox.3 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 GO:GO:0008270 MGI_trans_name:Rnf44-002 Vega_translation:214508 Vega_translation:OTTMUSP00000043448 goslim_goa:GO:0003674 goslim_goa:GO:0043167 OTTP:OTTMUSP00000043448 OTTT:OTTMUST00000081276 UniParc:UPI00005B2861
definition	note : transcript_id=ENSMUST00000134862 protein_id : ENSMUSP00000114259 translation : MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49267.1 Uniprot/SWISSPROT:Q3UHJ8 RefSeq_peptide:NP_001139499 RefSeq_mRNA:NM_001146027.1 Vega_transcript:OTTMUST00000081278 Vega_transcript:Rnf44-004 UCSC:uc007qow.2 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 GO:GO:0008270 MGI_trans_name:Rnf44-004 Vega_translation:214509 Vega_translation:OTTMUSP00000043450 goslim_goa:GO:0003674 goslim_goa:GO:0043167 OTTP:OTTMUSP00000043450 OTTT:OTTMUST00000081278 UniParc:UPI00005B2861
definition	note : transcript_id=ENSMUST00000150806 protein_id : ENSMUSP00000123198 translation : MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49266.1 Uniprot/SWISSPROT:Q3UHJ8 Vega_transcript:OTTMUST00000081279 Vega_transcript:Rnf44-005 UCSC:uc007qow.2 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 GO:GO:0008270 MGI_trans_name:Rnf44-005 Vega_translation:214510 Vega_translation:OTTMUSP00000043451 goslim_goa:GO:0003674 goslim_goa:GO:0043167 OTTP:OTTMUSP00000043451 OTTT:OTTMUST00000081279 UniParc:UPI00005AD397
definition	note : transcript_id=ENSMUST00000128257 protein_id : ENSMUSP00000116850 translation : MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081280 Vega_transcript:Rnf44-006 Uniprot/SPTREMBL:D3Z721 EMBL:AC162526 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Rnf44-006 Vega_translation:214511 Vega_translation:OTTMUSP00000043452 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000043452 OTTT:OTTMUST00000081280 UniParc:UPI0001889CF7
definition	note : transcript_id=ENSMUST00000126717 protein_id : ENSMUSP00000116043 translation : MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLPRPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQH

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081284 Vega_transcript:Rnf44-010 Uniprot/SPTREMBL:D3Z7N0 EMBL:AC162526 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Rnf44-010 Vega_translation:214512 Vega_translation:OTTMUSP00000043455 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000043455 OTTT:OTTMUST00000081284 UniParc:UPI0001889CFA
definition	note : transcript_id=ENSMUST00000129881 protein_id : ENSMUSP00000122161 translation : MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPGPYHTYPHLISSDHYILH

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081281 Vega_transcript:Rnf44-007 Uniprot/SPTREMBL:D3Z6V1 EMBL:AC162526 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Rnf44-007 Vega_translation:214513 Vega_translation:OTTMUSP00000043453 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000043453 OTTT:OTTMUST00000081281 UniParc:UPI0001889CF8
definition	note : transcript_id=ENSMUST00000125927 protein_id : ENSMUSP00000122292 translation : MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLPRPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLC

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081287 Vega_transcript:Rnf44-013 Uniprot/SPTREMBL:D3Z6D0 EMBL:AC162526 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Rnf44-013 Vega_translation:214514 Vega_translation:OTTMUSP00000043458 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000043458 OTTT:OTTMUST00000081287 UniParc:UPI0001889CFD
definition	note : transcript_id=ENSMUST00000122935 protein_id : ENSMUSP00000117050 translation : MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQG

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081282 Vega_transcript:Rnf44-008 Uniprot/SPTREMBL:D3YXW8 EMBL:AC162526 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Rnf44-008 Vega_translation:214515 Vega_translation:OTTMUSP00000043454 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000043454 OTTT:OTTMUST00000081282 UniParc:UPI0001889CF9
definition	note : transcript_id=ENSMUST00000134177 protein_id : ENSMUSP00000118244 translation : MLHPATQQSPFMVDLHEQV

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081288 Vega_transcript:Rnf44-014 Uniprot/SPTREMBL:D3YYQ1 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Rnf44-014 Vega_translation:214516 Vega_translation:OTTMUSP00000043459 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000043459 OTTT:OTTMUST00000081288 UniParc:UPI0001889CFE
definition	note : transcript_id=ENSMUST00000145397 protein_id : ENSMUSP00000118186 translation : MLHPATQQSPFMVDLHE

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081285 Vega_transcript:Rnf44-011 MGI_trans_name:Rnf44-011 Vega_translation:214517 Vega_translation:OTTMUSP00000043456 OTTP:OTTMUSP00000043456 OTTT:OTTMUST00000081285 UniParc:UPI0001889CFB
definition	note : transcript_id=ENSMUST00000146931 protein_id : ENSMUSP00000121611 translation : MLHPATQ

name	Rnf44 (ENSMUSG00000034928) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081286 Vega_transcript:Rnf44-012 Uniprot/SPTREMBL:D3Z261 EMBL:AC162526 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Rnf44-012 Vega_translation:214518 Vega_translation:OTTMUSP00000043457 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000043457 OTTT:OTTMUST00000081286 UniParc:UPI0001889CFC
definition	note : transcript_id=ENSMUST00000150626 protein_id : ENSMUSP00000119466 translation : MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLPRPSNLSVEE

name
type	STS
link
xref	UniSTS_NUM:180536 UniSTS:AI854545 WI_MRC-RH:675522
definition	note : map_weight=1 standard_name : AI854545

name
type	STS
link
xref	UniSTS_NUM:180542 UniSTS:AI429388 WI_MRC-RH:427716
definition	note : map_weight=1 standard_name : AI429388

name
type	misc_feature
link
xref
definition	note : contig AC162526.3 61529..219418(1)

name	Rnf44 (ENSMUSG00000034928)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081291 Vega_transcript:OTTMUST00000081291 MGI_trans_name:Rnf44-017 OTTT:OTTMUST00000081291
definition	note : retained_intron note : transcript_id=ENSMUST00000145215

name	Rnf44 (ENSMUSG00000034928)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081290 Vega_transcript:OTTMUST00000081290 MGI_trans_name:Rnf44-016 OTTT:OTTMUST00000081290
definition	note : retained_intron note : transcript_id=ENSMUST00000128038

name	Rnf44 (ENSMUSG00000034928)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081289 Vega_transcript:OTTMUST00000081289 MGI_trans_name:Rnf44-015 OTTT:OTTMUST00000081289
definition	note : processed_transcript note : transcript_id=ENSMUST00000123333

name	Rnf44 (ENSMUSG00000034928)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081283 Vega_transcript:OTTMUST00000081283 MGI_trans_name:Rnf44-009 OTTT:OTTMUST00000081283
definition	note : processed_transcript note : transcript_id=ENSMUST00000144052

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rnf44 (ENSMUSG00000034928)
Transcript ID	ENSMUST00000134862

Reports
substitution
cSNPs	1
Insertion	10
Deletion	12
SNPs	+1kb 54694232(c.-10218T>C), 54694536(c.-10522C>A), 54694695(c.-10681G>A), 54694775(c.-10761C>T), 54694888(c.-10874G>C), 54695036(c.-11022T>C), 54695306(c.-11292T>C), 54695568(c.-11554A>G), 54695775(c.-11761C>T), 54695927(c.-11913T>A), 54696662(c.-12648T>G), 54696756(c.-12742T>G), 54696763(c.-12749A>G), 54697835(c.-13821T>G), 54698596(c.-14582G>A), 5'UTR 54693868(c.-363T>C), CDS 54683703(c.114C>T), 3'UTR 54679882(c.1867C>T), 54680085(c.1664C>T), 54680979(c.770T>G), 54681167(c.582C>T), 54681208(c.541G>A), INTRON 54682076(c.893+37G>A), 54682281(c.771+46T>G), 54682306(c.771+21G>A), 54683880(c.54+81T>G), 54683886(c.54+75A>G), 54684202(c.-72-116T>C), 54684213(c.-73+125T>C), 54684321(c.-73+17A>C), 54684550(c.-223-62A>C), 54684670(c.-223-182A>G), 54684754(c.-223-266T>C), 54684823(c.-223-335G>T), 54685089(c.-223-601A>G), 54685272(c.-223-784A>G), 54685287(c.-223-799A>G), 54685343(c.-223-855A>G), 54685723(c.-223-1235A>G), 54685755(c.-223-1267G>A), 54685917(c.-223-1429T>C), 54686177(c.-223-1689C>T), 54686222(c.-223-1734G>C), 54686726(c.-223-2238A>G), 54686751(c.-223-2263G>A), 54686776(c.-223-2288A>G), 54687126(c.-223-2638C>T), 54687360(c.-223-2872C>T), 54687833(c.-223-3345G>A), 54687974(c.-223-3486A>T), 54688356(c.-223-3868C>T), 54688392(c.-223-3904A>G), 54688393(c.-223-3905C>A), 54688611(c.-223-4123T>C), 54688816(c.-223-4328T>G), 54688997(c.-223-4509T>A), 54689447(c.-224+4282G>A), 54689558(c.-224+4171C>T), 54689643(c.-224+4086C>T), 54689733(c.-224+3996A>G), 54690088(c.-224+3641C>A), 54690741(c.-224+2988C>T), 54690914(c.-224+2815G>C), 54691144(c.-224+2585A>G), 54691444(c.-224+2285T>C), 54691462(c.-224+2267G>A), 54691539(c.-224+2190G>A), 54691687(c.-224+2042A>C), 54692048(c.-224+1681G>C), 54692193(c.-224+1536G>A), 54693219(c.-224+510G>A), -1kb 54674495(c.7254C>A), 54674637(c.7112A>T), 54675335(c.6414G>T), 54675400(c.6349C>A), 54675718(c.6031A>T), 54676540(c.5209G>T), 54676690(c.5059C>T), 54676851(c.4898G>A), 54677027(c.4722A>G), 54677274(c.4475A>G), 54677278(c.4471A>G), 54677282(c.4467A>G), 54677327(c.4422A>G), 54677344(c.4405T>G), 54677479(c.4270G>A), 54677586(c.4163A>G), 54677587(c.4162C>T), 54678126(c.3623A>G), 54678127(c.3622C>T), 54678220(c.3529C>T), 54678306(c.3443G>A), 54678631(c.3118C>A), 54678657(c.3092A>G),
Insertions	+1kb 54693944 (c.-9931_-9930insA), 54695146 (c.-11133_-11132insTGCCTC), 54695655 (c.-11642_-11641insG), 54698698 (c.-14685_-14684insG), 5'UTR CDS 3'UTR INTRON 54686907 (c.-223-2420_-223-2419insTCCTTTA), 54689069 (c.-223-4585_-223-4582dupCAAA), -1kb 54676968 (c.4780_4781insGTT), 54677755 (c.3993_3994insGTGT), 54678670 (c.3078_3079insGAGAG), 54679161 (c.2587_2588insGGCTGGC),
Deletions	+1kb 54695427 (c.-11421_-11414delAAGAAAGA), 54696404 (c.-12394_-12391delTGGT), 54698794 (c.-14788_-14781delGAGAGAGA), 5'UTR CDS 3'UTR 54679779 (c.1968_1969delAC), INTRON 54683347 (c.223-134_223-129delTGGCAG), 54684694 (c.-223-215_-223-207delAGCTGGCCC), 54685736 (c.-223-1255_-223-1249delGTGTGTC), 54688680 (c.-223-4194_-223-4193delGG), 54689191 (c.-224+4537delA), 54690229 (c.-224+3499delC), -1kb 54674721 (c.7025_7027delAAA), 54677822 (c.3918_3926delATATACAGA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	54683703 (p.Phe38Phe),
non-synonymous substitutions
B6 transcript (ENSMUST00000134862)	MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVM FSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPL GQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLH QELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGP TISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCV VCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE*
MSMv4 transcript	MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVM FSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPL GQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLH QELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGP TISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCV VCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE*
homology	100.00 (352 / 352)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rnf44 (ENSMUSG00000034928)
Transcript ID	ENSMUST00000134862


..........TCCATGCTCCAAGTTCGTTCCACTTGGCAGGTACAAAGTCTCTTCGGTGC
CTGTACAGTAAGGACGCCAGTCCGGAAACAGGTCAACCTTAGAAACAACTTTCCAACCCA
CACCTGGCCTCAGAACCCTAGGTCCCTTTCAGAGAACATCCCCTTTAAAGCGCTCTTGTC
AAGAGGAAGCCAACAAAAGGAGGCTTTAAAGGCCCAGTTAACACTGAGGACAACGAACCA
CAGAGAAGCCAACTAAGTCTTGGGCTGAGATCCTAAAAGCCTTGGGGCAAGCCCCAGGGC
AAGGTCTGTAGGAACTACAACTTCCGGCATGCCCGGCAGCGCGGCCCGCTGGGAGTTGTA
GTCCTCACCGACCTGCTTCCCAGCGCGATTAAGGAAAGGTCCAGGCAGGGTCTACCCCCT
CCTCTGGAGTCTGTGGAGTATCTGGAGTCTGTGTCCTCTCAAGTGTCCTTGAAAGGCCAC
AGAGTCGTATTTAACTTATTTTACAGGAGAAATAGGGCCGGCCCTCATGCCGGGTCAAAG
AGGCACTGAGAGCGCGACGGCTCCTACGCGCTTCGCCCGCGCCTCTGGGGTCGCGCCAAG
GGGAAGTGTCCGGAAGCCCCGCCCCACCCTCCCCGGGTCCGCGATGGTACAGCCCGACGG
GACCATTGTGCGCCTCAGGGGGAGACGACGTTCAGCTCCATGGGTTTCGCCCGTGTTGAG
GGGGCGTGTCCAGATTCCCCGTTCCCGGCTTCCCCCGCTCCGCGGTGGTGAGGCCCGCCC
CGCCCATTGCGCACATCCCGCGGGGAGTTCACTGAGGGGGCGTGCCCGGAAGCCCCGCCC
GAGCTCTCCCCCTGACAGCGCTGGCTCGGTCCGGCCGGCCCATTGCACGCTGTGAGGCGG
GGCGGACCATTCGGCTGGGGCGCGTCGTCCCTGCGGTCCCCGGAAGGTAGTGTGCCCAGA
CGCTCCGCCCTTTCCCCCCCCCCCACGATGGTGCGGCCCGACCAGCCCAT
AGCGAGCACTGGGGATGGGGGAGGCGACGAGCGGGGTCGCCGCCACTGAGAGGTTCCATTGCGGGCGCAGGGGGAGGGCCGCGGCCGGCGGCTTGCGAGCCGCAGCCGGAGCCGGACCGGGCTGCCCCGGGAGCAACGCGCCGCTGCCTATTCGGGGTGGAGCCCAGCCGTGGCCCCAG
GTAACGACCGGGCGCGGGCTGCTGT..........ACATCTTTCTCTAATTACCTCCTAG
GGTTGTGAGCCCCGGCACAGCCCCTCCACCTCCCTGCCCTCCTGATGAGACCATGGACTTTGGCAGTGACTAAGTGGCCACCTTCTGCCCCTGTGGGTCACTGGCGAGTCTCTACAAGGCTTAGCAGCAGTCCAGGCCAGCTCTGGGGAAG
GTAGGAAGAAGTCTCTCTCTCTTAA..........GGATGAGCGCTTACCCTCCCAGCAG
CTGCTGCCCAGACCATCAAACCTCTCTGTAGAGGAGCACCGAGCCTCAGCTCCTGCCGGCAGGAGCCCCCGAATGCTGCACCCAGCCACCCAGCAGAGCCCGTTCATGGTTGATCTCCACGAACAA
GTAAGTACAACTACCTCACCCCCTG..........CAGTTCTCTGCTGCTCTCTCCACAG
GTGCACCAGGGACCTGTCCCTCTGTCCTACACGGTCACCACAGTGACAACCCAAGGCTTTCCTTTGCCTACAAGCCAACACATCCCTGGCTGCAGTGCCCAGCAGCTCCCAGCATGCTCCGTGATGTTCAGTGGGCAGCACTACCCCCTCTGCTGCCTCCCACCTCCG
GTGAGTGAATGACTTCTTCCACCCA..........GGCCCAGCTTCTCTACCTCTCTCAG
CAGCTGATCCAGGCGTGCACCATGCAGCAGCTCCCTGGGCCCTACCACACCTACCCCCACCTCATCTCCAGTGACCACTACATCCTTCACCCACCACCGCCAGCCCCACCGCCCCAGCCTACCCACATGGCACCGCTTGGGCAGTTTGTGTCCCTGCAGACCCAGCACCCACGTATG
GTAAGTGTGGGAACTGGAGGGGGAG..........GGCTGACTGGCCTTTCCTCACTTAG
CCCCTGCAGCGGCTGGATAACGAGATGGACCTTCGAGGAGACCAGCACCCCTTGGGTAGCTTCACTTACTCCACCTCTGCCACTGGCCCAGCCTTGTCGCCCTCAGTGCCCCTTCACTACCTACCCCATGATCCACTGCACCAGGAGCTGTCCTTTGGTGTG
GTGAGTGGCCGTCCCTATCTGAAGC..........CCTGCGCTTGGTTCCCTGTGTGCAG
CCATATTCCCACATGATGCCACGAAGACTGAGCACACAGAGATACCGCCTGCAACAGCCGCTGCCACCACCCCCACCGCCGCCGCCACCATCTTACTACCCAAGCTTCCTACCCTACTTCCT
GTAAGTGCCAGCATAACTGCCCTAG..........ATTCTGGGCCTCCCTCCCTGTCTAG
TTCAATGCTGCCAATGTCACCGACCACCGTGGGCCCCACCATCAGCTTGGACCTGGACGTGGATGACGTAGAGATGGAGAACTATGAG
GTCTGTGGAGCCCGGGCTGGACTGG..........GCTGACCTCCCTTGCCTGGTTGTAG
GCTCTCCTGAACCTGGCTGAGCGGCTGGGAGACGCCAAGCCCCGGGGCCTCACCAAAGCAGACATCGAACAACTGCCGTCGTATCGCTTTAACCCTGACAGCCATCAGTCTGAGCAGACTCT
GTGAGTGTCACCCTGGAAGCCCAGG..........GTGCTGACACTGTGCCCCTCCTCAG
GTGTGTGGTCTGCTTCAGTGACTTCGAGGTGCGGCAACTGCTCCGAGTCCTCCCCTGCAACCACGAGTTCCATGCCAAGTGTGTTGACAAGTGGTTGAAG
GTAAGGTGGCCTGAGCCGGCTCCTG..........GTCTGATGTGTGGGTGTTCTCCCAG
GCCAACCGGACCTGTCCCATTTGCCGGGCGGATGCCTCCGAGGTGCCCAGGGAGGCCGAGTGAGGCTCCACAGCCACCCACGAGATCCCTGCCCAAAGCTCCGGAATTGGGTGGGGGGGAGCAGGGCGTGGCCCGGGGAGGACTGTGAGGGCGGGGCCAGGCCTGTCAGCGTTCCCACCTGCCACTCCAGAGCTGGTGCCAGGGTCAGTCTGGAGAAGCCCCTGCAATAAGCCCCTGCATTGCCAAGCTCCAAAGACTCCTTCCCCAGTCTGCCTGCCTGCCTGCCTGCCCGCCACGGAGCTGCCTGAGTTTCCCCAACTCAGTCTGCTTCTTATCTGCCCCTGGGTCCTTCTTCCTGCTGGCTCTGGGAGGCAGGAGTCCATTCCCCAAGTGTGGTGGCTGGTGTGATTTCCCCAGACCCCAGACGGACAAAGGAATAGCCACCCTGGGTCAACTGGTCTCCTGTACTGAAATGACGTGTCCTTCCCTGCCCTAGTGGGGTTGCCAGGTGTGTGGGCAGGGAGTAGCCAGAGACCATTTCCTGAGTTCTCCTGTTTGGTTCCAGACAGACATAGGCAGTCAGCTCTGCCTCCACTGCTGTGTAGTGTGGGTCTGACTCCCCAGGACCCTTACCCCAGGCACAGTGTTCCAGCCCACCCCCAGGCTGGAGAGTATCCCAGCCAGGCTCCATGAGCAAATGGGCCAGGGCTCCAAGCTGGATACATTGTGTTCTGCAGTAGCCTCGAGCGATCTGGGCATGTTCTTGTGTTCCTGGTGGCTGCCCCTCCACCAGTGACAGTGTCAGACCCATGCTCGATCCTCCCCCTCTGTCGTTTTGCATGAATGTGAGGAACAGCAGTTTTTGTTTATTCATTTGGCCCAAAATTGCGTGTAGGGGGTGTGGATATTTAAGAGGTGTTTAGTTTTTTATTATCTTGTTTTCTCTTTGGTTTAATAGGAGTGGGGGCATAGGGACCAACCGGGACCAAATGCCCAGGGGGCAGAGTAGGGTCCGGTTCTGCCACACCAGGCCTCCACATGAGTGTGTGCGGCTGGAACTTTATCTGGGTGGCTGGAAGTCACAGGGCGGAGTTTGGGGGGGTCTGTGCTCAGCTGATAACTGCCATGCACTGTACTGCACATGTCCCTAGAGCCTACCGGGACCGTCTGCTTTTCAGGGCATCTCCTCTCCAGCCAGGGCCTGTGTCCCACCTGCCTGGGTGAGTCTCCTAGCAATCCTGTGAGGACAGGGGTCAGGGAGGACATGAACCTCCACCTCAGGGGGCCCCTCCCGGCCTGATTCCTGCCCTCCAAGGTCTGGAGGAGGCTGTGTTCCTTACCCTCCTTTCAGGTCCCACTCCTTTCCTTTCCTACCGCCAACTGGGGTTGCTGCGCTGCCTGGAGTGAACGAACCGCGTGTGGGGCCGGCACATCCTAGCAGGCAGCCATTGGCGCCTGCTGCCTCAGGGATGCTCCAACCACCCTCGTTCTCACCGCAGCCCTGCCCCCACCCCAGCCTGCCAGGCCCCATTGGCCTGGTCCCACCCCACAAGAACCCAAAGTCTTACTGTATATAACTCCAGGTGATGTTTCTATATTTATAGCAGTGTTGAAAATCCACGTGTTTTACACAGAGAACCACCTTCTCCAACCCCCATCCCTTCCTCACCCCAAAAAAGGTTTTCAAACCCTTGTGGTTCCTGGGGCAGCAGAATTGGCTCATGGATTGTGTCGGCTGCAGTGATGATTCCAGCAAGCAGCTACTAGGGGGAAATACACCTTTTTTGTTTGTTTGTTTTTAATCATTTAAAAAAGATTTATGAAACAATTACTTAGGATGTTTGTGATTTGCCGACCTTGCTGTAGATGCCATGTTACCAATGATTTCCTGTGGTGGGGGCTTGGCATTGTTTACTCTTTATTTACCAATTTCTGGCCTAGGCATGACAGTGGGCACCTTCCCCCAGCACTGCTGGGCCCAGCGCCTGTGTTCTGTGTTAGAAAAGTTTTATATATATATATCTAACTAAACACACACACACATATATATATATATATAAACACATGTGATTTGGGGGCCCTGTTCCTTGCACATCTTACAGTTACCTCATTTTTCCCATGTATGTATTTGAGAAAATGCTAATATATAGAGACAAATGGTTCTTAAAGCTTAAATGTGTGGTTTTTTCCATCCCATTGGACTCACATTGGTTTGTAGCATTTAACATAACTAGTATGTTGTATTATATATGTGTATACTGATTGAAATTTTTAACAGATTTGTACTTTTTTTAAAATGAAAGTTGCTAGTTCTGCTTGACCAAGTAGTGCAATCATTATTTTTTTTAATATTGTTGCTGATTTCAGAGGGATATTCACTAATAAATGTATGATGTATACGA
GTGCTGCCCAAGCTGCCTCTGGCTGCTCTCTGTGTTCTTTCCATGAGAAGTGGGGAATGG
GGACGTGGAGACTGGTCATGCTCAGTGGGGTGGCAAGCCATGAACTGACCAGAAACACCT
GCCTTGAGTGGAAATGGGTTGTGTTGGCAAGTTACAAGATTCCATCGAACAAATGTGAGG
AGGACACCTGGTCATCCGAACTTCTAGGTTGTTCTTGGCATTTTGAGGTGATCTCATGTA
GCCCAGGCCTCAGATTCAAATCTGTAGTTGAGGATGAACCGTCTTCTGTCTCCAAAGTGC
TGGAGTTAGAGGCACGTCCCCTCACACAGGCCATAACACTGAACTTCTGAGGGAGTGGGC
TGTGTGCAGCTCAATGGTGGGGTGTGCTACCCTAGCTCATGCCAAGCACTGGGCCTCATC
CCCAACATAATGGGTCAAGGTGCAGTCCAACTGCGTTTCTCCAAAAGGGGAAACCTCGAG
AACTCCATTAGACATTGGACAACTCTGGGTTCAGCAGCATGATTGGCCAGGCCACAACCT
GAGGTAGACCTGTGCACTCCATGCCTCTGTTCCCTGCCCCAGTGGGGCTTCATTTATCTC
CATGGTGGCATTGGGTACAGGGCTTCAGGAGTGAGCATGCCAAACAGCACGATTCTGCAG
AGCAGTACCTTGTGTGATGCCACTAACCAGAGCTCTGGTCAAGTGCTTTTCATGGAGTCT
GAATCATTGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTATGTGTAGGCAGAATCAGAT
GAGGTGTTTTAGAAGTGAGGAAGTCCACTAGGCAGTATCATGGGATAAGGGCTCTGATAG
TCTAACTGGGCCTTGCTCGGACCTATGCTGTAAATCTCTAGAGTTGATCATGAAGGCTGT
GTGTCATGTATTTGCTTTGGCTGCAGCTGCACACCCTTGCAGTGTACCGGGACATGGTAG
ATTATGTGTTGCAGCAGCTGAGTTCCCAGACTCTAGAGCA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TCCATGCTCCAAGTTCGTTCCACTTGGCAGGTACAAAGTCTCTTCGGTGC CTGTACAGTAAGGACGCCAGTCCGGAAACAGGTCAACCTTAGAAACAACTTTCCAACCCA CACCTGGCCTCAGAACCCTAGGTCCCTTTCAGAGAACATCCCCTTTAAAGCGCTCTTGTC AAGAGGAAGCCAACAAAAGGAGGCTTTAAAGGCCCAGTTAACACTGAGGACAACGAACCA CAGAGAAGCCAACTAAGTCTTGGGCTGAGATCCTAAAAGCCTTGGGGCAAGCCCCAGGGC AAGGTCTGTAGGAACTACAACTTCCGGCATGCCCGGCAGCGCGGCCCGCTGGGAGTTGTA GTCCTCACCGACCTGCTTCCCAGCGCGATTAAGGAAAGGTCCAGGCAGGGTCTACCCCCT CCTCTGGAGTCTGTGGAGTATCTGGAGTCTGTGTCCTCTCAAGTGTCCTTGAAAGGCCAC AGAGTCGTATTTAACTTATTTTACAGGAGAAATAGGGCCGGCCCTCATGCCGGGTCAAAG AGGCACTGAGAGCGCGACGGCTCCTACGCGCTTCGCCCGCGCCTCTGGGGTCGCGCCAAG GGGAAGTGTCCGGAAGCCCCGCCCCACCCTCCCCGGGTCCGCGATGGTACAGCCCGACGG GACCATTGTGCGCCTCAGGGGGAGACGACGTTCAGCTCCATGGGTTTCGCCCGTGTTGAG GGGGCGTGTCCAGATTCCCCGTTCCCGGCTTCCCCCGCTCCGCGGTGGTGAGGCCCGCCC CGCCCATTGCGCACATCCCGCGGGGAGTTCACTGAGGGGGCGTGCCCGGAAGCCCCGCCC GAGCTCTCCCCCTGACAGCGCTGGCTCGGTCCGGCCGGCCCATTGCACGCTGTGAGGCGG GGCGGACCATTCGGCTGGGGCGCGTCGTCCCTGCGGTCCCCGGAAGGTAGTGTGCCCAGA CGCTCCGCCCTTTCCCCCCCCCCCACGATGGTGCGGCCCGACCAGCCCAT
1	EXON 1	54693729	54693907	-	-	179	AGCGAGCACTGGGGATGGGGGAGGCGACGAGCGGGGTCGCCGCCACTGAGAGGTTCCATT GCGGGCGCAGGGGGAGGGCCGCGGCCGGCGGCTTGCGAGCCGCAGCCGGAGCCGGACCGG GCTGCCCCGGGAGCAACGCGCCGCTGCCTATTCGGGGTGGAGCCCAGCCGTGGCCCCAG
	INTRON 1 - 2	54684489	54693728			9240	GTAACGACCGGGCGCGGGCTGCTGT..........ACATCTTTCTCTAATTACCTCCTAG
2	EXON 2	54684338	54684488	-	-	151	GGTTGTGAGCCCCGGCACAGCCCCTCCACCTCCCTGCCCTCCTGATGAGACCATGGACTT TGGCAGTGACTAAGTGGCCACCTTCTGCCCCTGTGGGTCACTGGCGAGTCTCTACAAGGC TTAGCAGCAGTCCAGGCCAGCTCTGGGGAAG
	INTRON 2 - 3	54684087	54684337			251	GTAGGAAGAAGTCTCTCTCTCTTAA..........GGATGAGCGCTTACCCTCCCAGCAG
3	EXON 3	54683961	54684086	-	0	126	CTGCTGCCCAGACCATCAAACCTCTCTGTAGAGGAGCACCGAGCCTCAGCTCCTGCCGGC AGGAGCCCCCGAATGCTGCACCCAGCCACCCAGCAGAGCCCGTTCATGGTTGATCTCCAC GAACAA
	INTRON 3 - 4	54683763	54683960			198	GTAAGTACAACTACCTCACCCCCTG..........CAGTTCTCTGCTGCTCTCTCCACAG
4	EXON 4	54683595	54683762	0	0	168	GTGCACCAGGGACCTGTCCCTCTGTCCTACACGGTCACCACAGTGACAACCCAAGGCTTT CCTTTGCCTACAAGCCAACACATCCCTGGCTGCAGTGCCCAGCAGCTCCCAGCATGCTCC GTGATGTTCAGTGGGCAGCACTACCCCCTCTGCTGCCTCCCACCTCCG
	INTRON 4 - 5	54683220	54683594			375	GTGAGTGAATGACTTCTTCCACCCA..........GGCCCAGCTTCTCTACCTCTCTCAG
5	EXON 5	54683043	54683219	0	0	177	CAGCTGATCCAGGCGTGCACCATGCAGCAGCTCCCTGGGCCCTACCACACCTACCCCCAC CTCATCTCCAGTGACCACTACATCCTTCACCCACCACCGCCAGCCCCACCGCCCCAGCCT ACCCACATGGCACCGCTTGGGCAGTTTGTGTCCCTGCAGACCCAGCACCCACGTATG
	INTRON 5 - 6	54682951	54683042			92	GTAAGTGTGGGAACTGGAGGGGGAG..........GGCTGACTGGCCTTTCCTCACTTAG
6	EXON 6	54682789	54682950	0	0	162	CCCCTGCAGCGGCTGGATAACGAGATGGACCTTCGAGGAGACCAGCACCCCTTGGGTAGC TTCACTTACTCCACCTCTGCCACTGGCCCAGCCTTGTCGCCCTCAGTGCCCCTTCACTAC CTACCCCATGATCCACTGCACCAGGAGCTGTCCTTTGGTGTG
	INTRON 6 - 7	54682702	54682788			87	GTGAGTGGCCGTCCCTATCTGAAGC..........CCTGCGCTTGGTTCCCTGTGTGCAG
7	EXON 7	54682580	54682701	0	2	122	CCATATTCCCACATGATGCCACGAAGACTGAGCACACAGAGATACCGCCTGCAACAGCCG CTGCCACCACCCCCACCGCCGCCGCCACCATCTTACTACCCAAGCTTCCTACCCTACTTC CT
	INTRON 7 - 8	54682415	54682579			165	GTAAGTGCCAGCATAACTGCCCTAG..........ATTCTGGGCCTCCCTCCCTGTCTAG
8	EXON 8	54682327	54682414	2	0	88	TTCAATGCTGCCAATGTCACCGACCACCGTGGGCCCCACCATCAGCTTGGACCTGGACGT GGATGACGTAGAGATGGAGAACTATGAG
	INTRON 8 - 9	54682235	54682326			92	GTCTGTGGAGCCCGGGCTGGACTGG..........GCTGACCTCCCTTGCCTGGTTGTAG
9	EXON 9	54682113	54682234	0	2	122	GCTCTCCTGAACCTGGCTGAGCGGCTGGGAGACGCCAAGCCCCGGGGCCTCACCAAAGCA GACATCGAACAACTGCCGTCGTATCGCTTTAACCCTGACAGCCATCAGTCTGAGCAGACT CT
	INTRON 9 - 10	54682034	54682112			79	GTGAGTGTCACCCTGGAAGCCCAGG..........GTGCTGACACTGTGCCCCTCCTCAG
10	EXON 10	54681934	54682033	2	0	100	GTGTGTGGTCTGCTTCAGTGACTTCGAGGTGCGGCAACTGCTCCGAGTCCTCCCCTGCAA CCACGAGTTCCATGCCAAGTGTGTTGACAAGTGGTTGAAG
	INTRON 10 - 11	54681812	54681933			122	GTAAGGTGGCCTGAGCCGGCTCCTG..........GTCTGATGTGTGGGTGTTCTCCCAG
11	EXON 11	54679410	54681811	0	-	2402	GCCAACCGGACCTGTCCCATTTGCCGGGCGGATGCCTCCGAGGTGCCCAGGGAGGCCGAG TGAGGCTCCACAGCCACCCACGAGATCCCTGCCCAAAGCTCCGGAATTGGGTGGGGGGGA GCAGGGCGTGGCCCGGGGAGGACTGTGAGGGCGGGGCCAGGCCTGTCAGCGTTCCCACCT GCCACTCCAGAGCTGGTGCCAGGGTCAGTCTGGAGAAGCCCCTGCAATAAGCCCCTGCAT TGCCAAGCTCCAAAGACTCCTTCCCCAGTCTGCCTGCCTGCCTGCCTGCCCGCCACGGAG CTGCCTGAGTTTCCCCAACTCAGTCTGCTTCTTATCTGCCCCTGGGTCCTTCTTCCTGCT GGCTCTGGGAGGCAGGAGTCCATTCCCCAAGTGTGGTGGCTGGTGTGATTTCCCCAGACC CCAGACGGACAAAGGAATAGCCACCCTGGGTCAACTGGTCTCCTGTACTGAAATGACGTG TCCTTCCCTGCCCTAGTGGGGTTGCCAGGTGTGTGGGCAGGGAGTAGCCAGAGACCATTT CCTGAGTTCTCCTGTTTGGTTCCAGACAGACATAGGCAGTCAGCTCTGCCTCCACTGCTG TGTAGTGTGGGTCTGACTCCCCAGGACCCTTACCCCAGGCACAGTGTTCCAGCCCACCCC CAGGCTGGAGAGTATCCCAGCCAGGCTCCATGAGCAAATGGGCCAGGGCTCCAAGCTGGA TACATTGTGTTCTGCAGTAGCCTCGAGCGATCTGGGCATGTTCTTGTGTTCCTGGTGGCT GCCCCTCCACCAGTGACAGTGTCAGACCCATGCTCGATCCTCCCCCTCTGTCGTTTTGCA TGAATGTGAGGAACAGCAGTTTTTGTTTATTCATTTGGCCCAAAATTGCGTGTAGGGGGT GTGGATATTTAAGAGGTGTTTAGTTTTTTATTATCTTGTTTTCTCTTTGGTTTAATAGGA GTGGGGGCATAGGGACCAACCGGGACCAAATGCCCAGGGGGCAGAGTAGGGTCCGGTTCT GCCACACCAGGCCTCCACATGAGTGTGTGCGGCTGGAACTTTATCTGGGTGGCTGGAAGT CACAGGGCGGAGTTTGGGGGGGTCTGTGCTCAGCTGATAACTGCCATGCACTGTACTGCA CATGTCCCTAGAGCCTACCGGGACCGTCTGCTTTTCAGGGCATCTCCTCTCCAGCCAGGG CCTGTGTCCCACCTGCCTGGGTGAGTCTCCTAGCAATCCTGTGAGGACAGGGGTCAGGGA GGACATGAACCTCCACCTCAGGGGGCCCCTCCCGGCCTGATTCCTGCCCTCCAAGGTCTG GAGGAGGCTGTGTTCCTTACCCTCCTTTCAGGTCCCACTCCTTTCCTTTCCTACCGCCAA CTGGGGTTGCTGCGCTGCCTGGAGTGAACGAACCGCGTGTGGGGCCGGCACATCCTAGCA GGCAGCCATTGGCGCCTGCTGCCTCAGGGATGCTCCAACCACCCTCGTTCTCACCGCAGC CCTGCCCCCACCCCAGCCTGCCAGGCCCCATTGGCCTGGTCCCACCCCACAAGAACCCAA AGTCTTACTGTATATAACTCCAGGTGATGTTTCTATATTTATAGCAGTGTTGAAAATCCA CGTGTTTTACACAGAGAACCACCTTCTCCAACCCCCATCCCTTCCTCACCCCAAAAAAGG TTTTCAAACCCTTGTGGTTCCTGGGGCAGCAGAATTGGCTCATGGATTGTGTCGGCTGCA GTGATGATTCCAGCAAGCAGCTACTAGGGGGAAATACACCTTTTTTGTTTGTTTGTTTTT AATCATTTAAAAAAGATTTATGAAACAATTACTTAGGATGTTTGTGATTTGCCGACCTTG CTGTAGATGCCATGTTACCAATGATTTCCTGTGGTGGGGGCTTGGCATTGTTTACTCTTT ATTTACCAATTTCTGGCCTAGGCATGACAGTGGGCACCTTCCCCCAGCACTGCTGGGCCC AGCGCCTGTGTTCTGTGTTAGAAAAGTTTTATATATATATATCTAACTAAACACACACAC ACATATATATATATATATAAACACATGTGATTTGGGGGCCCTGTTCCTTGCACATCTTAC AGTTACCTCATTTTTCCCATGTATGTATTTGAGAAAATGCTAATATATAGAGACAAATGG TTCTTAAAGCTTAAATGTGTGGTTTTTTCCATCCCATTGGACTCACATTGGTTTGTAGCA TTTAACATAACTAGTATGTTGTATTATATATGTGTATACTGATTGAAATTTTTAACAGAT TTGTACTTTTTTTAAAATGAAAGTTGCTAGTTCTGCTTGACCAAGTAGTGCAATCATTAT TTTTTTTAATATTGTTGCTGATTTCAGAGGGATATTCACTAATAAATGTATGATGTATAC GA
	3' upstream sequence						GTGCTGCCCAAGCTGCCTCTGGCTGCTCTCTGTGTTCTTTCCATGAGAAGTGGGGAATGG GGACGTGGAGACTGGTCATGCTCAGTGGGGTGGCAAGCCATGAACTGACCAGAAACACCT GCCTTGAGTGGAAATGGGTTGTGTTGGCAAGTTACAAGATTCCATCGAACAAATGTGAGG AGGACACCTGGTCATCCGAACTTCTAGGTTGTTCTTGGCATTTTGAGGTGATCTCATGTA GCCCAGGCCTCAGATTCAAATCTGTAGTTGAGGATGAACCGTCTTCTGTCTCCAAAGTGC TGGAGTTAGAGGCACGTCCCCTCACACAGGCCATAACACTGAACTTCTGAGGGAGTGGGC TGTGTGCAGCTCAATGGTGGGGTGTGCTACCCTAGCTCATGCCAAGCACTGGGCCTCATC CCCAACATAATGGGTCAAGGTGCAGTCCAACTGCGTTTCTCCAAAAGGGGAAACCTCGAG AACTCCATTAGACATTGGACAACTCTGGGTTCAGCAGCATGATTGGCCAGGCCACAACCT GAGGTAGACCTGTGCACTCCATGCCTCTGTTCCCTGCCCCAGTGGGGCTTCATTTATCTC CATGGTGGCATTGGGTACAGGGCTTCAGGAGTGAGCATGCCAAACAGCACGATTCTGCAG AGCAGTACCTTGTGTGATGCCACTAACCAGAGCTCTGGTCAAGTGCTTTTCATGGAGTCT GAATCATTGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTATGTGTAGGCAGAATCAGAT GAGGTGTTTTAGAAGTGAGGAAGTCCACTAGGCAGTATCATGGGATAAGGGCTCTGATAG TCTAACTGGGCCTTGCTCGGACCTATGCTGTAAATCTCTAGAGTTGATCATGAAGGCTGT GTGTCATGTATTTGCTTTGGCTGCAGCTGCACACCCTTGCAGTGTACCGGGACATGGTAG ATTATGTGTTGCAGCAGCTGAGTTCCCAGACTCTAGAGCA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rnf44 (ENSMUSG00000034928)
Transcript ID	ENSMUST00000134862

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 352 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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