MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Git2 (ENSMUSG00000041890)

Cross Reference

EMBL	AC087330
GO	GO:0005096, GO:0005654, GO:0005925, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Git2-009
OTTP	OTTMUSP00000015486
OTTT	OTTMUST00000034593
UniParc	UPI0000D77AC4
Uniprot/SPTREMBL	D3Z409
Vega_transcript	Git2-009, OTTMUST00000034593
Vega_translation	194900, OTTMUSP00000015486

Definition

protein_id:ENSMUSP00000116722
translation:

MDQKPPAPSPVYDPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVE
TLYNNGANSIWEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRED
DSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAEL
LAVYGADPGTQDSSGKTPVDY

Chromosome

5

Length
Position(start - end)

11076
114764351 - 114775428

Orient to Chromosome

minus

Link

Location : (5:114764351-114775428)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Git2 (ENSMUSG00000041890)
Transcript ID	ENSMUST00000131016

Reports
substitution
cSNPs	1
Insertion	12
Deletion	9
SNPs	+1kb 114776461(c.-1033C>T), 114776670(c.-1242T>A), 114776891(c.-1463T>C), 114778146(c.-2718G>A), 114778252(c.-2824T>C), 114778444(c.-3016C>T), 114778888(c.-3460T>C), 114779300(c.-3872C>T), 114779442(c.-4014A>G), 114779655(c.-4227C>T), 114779835(c.-4407T>G), 114779895(c.-4467T>C), 114780295(c.-4867C>A), 114780503(c.-5075A>C), 5'UTR CDS 114764403(c.552T>C), 3'UTR INTRON 114765081(c.391-408G>A), 114765420(c.391-747A>C), 114765481(c.391-808G>A), 114765938(c.390+514A>C), 114766371(c.390+81T>C), 114766600(c.285-43A>T), 114766804(c.285-247A>G), 114766875(c.284+221C>T), 114767560(c.172-352A>G), 114767963(c.172-755A>G), 114768003(c.172-795C>T), 114768049(c.172-841C>T), 114768431(c.171+1186T>C), 114768657(c.171+960G>T), 114769111(c.171+506T>G), 114769129(c.171+488G>C), 114769331(c.171+286T>G), 114770247(c.38-497G>A), 114770257(c.38-507G>T), 114770316(c.38-566G>A), 114770609(c.38-859G>A), 114770610(c.38-860T>C), 114770935(c.38-1185A>T), 114771183(c.38-1433A>G), 114771754(c.38-2004T>C), 114772257(c.38-2507T>C), 114772629(c.37+2763T>C), 114773102(c.37+2290C>G), 114773322(c.37+2070A>G), 114773336(c.37+2056G>A), 114773521(c.37+1871C>T), 114773539(c.37+1853C>A), 114774781(c.37+611T>C), 114775092(c.37+300C>T), 114775309(c.37+83C>T), -1kb 114760005(c.4346C>T), 114760195(c.4156C>T), 114760430(c.3921C>T), 114760500(c.3851A>G), 114760604(c.3747C>A), 114760895(c.3456G>A), 114761108(c.3243G>A), 114761444(c.2907T>C), 114762284(c.2067T>C), 114762536(c.1815G>A), 114762709(c.1642C>T), 114762717(c.1634C>T), 114762890(c.1461T>C), 114763116(c.1235A>G), 114763215(c.1136T>G), 114763447(c.904A>G), 114763529(c.822A>G), 114763575(c.776A>G), 114763961(c.*390C>T),
Insertions	+1kb 114777475 (c.-2048dupT), 114778542 (c.-3115_-3114insA), 114778741 (c.-3315_-3314dupAA), 114779180 (c.-3753_-3752insTC), 114779384 (c.-3957dupC), 5'UTR CDS 3'UTR INTRON 114767571 (c.172-364_172-363insTTTATTTA), 114767655 (c.172-448_172-447insTGA), 114767660 (c.172-453_172-452insTG), 114767722 (c.172-515_172-514insACAC), 114768092 (c.172-885_172-884insT), 114772506 (c.38-2757_38-2756insGT), 114772849 (c.37+2542_37+2543insCCCA), -1kb
Deletions	+1kb 114775613 (c.-192_-186delCGTCTTC), 114777617 (c.-2196_-2190delCGGTGCT), 5'UTR CDS 3'UTR INTRON 114765443 (c.391-771delA), 114766642 (c.285-89_285-86delGGGT), 114767722 (c.172-516_172-515delAA), 114768159 (c.172-953_172-952delTT), 114771032 (c.38-1283delT), 114774572 (c.37+819delA), -1kb 114762453 (c.1896_1897delAG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	114764403 (p.Tyr184Tyr),
non-synonymous substitutions
B6 transcript (ENSMUST00000131016)	MDQKPPAPSPVYDPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVE TLYNNGANSIWEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRED DSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAEL LAVYGADPGTQDSSGKTPVDY
MSMv4 transcript	MDQKPPAPSPVYDPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVE TLYNNGANSIWEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRED DSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAEL LAVYGADPGTQDSSGKTPVDY
homology	100.00 (201 / 201)

Exon Detail Report

Gene Symbol (Gene ID)	Git2 (ENSMUSG00000041890)
Transcript ID	ENSMUST00000131016


..........GACACACTGGCTAAGACGAATGAATGAAGCCAAACCGTAACAATTATGGC
GGATTTTGGGAGTAATTATAAATCCTTATCTCATTTGCTACAGGCTAGAGAGCAACTCAG
GGCACCCGTGCCTAATGAAATGACTGCAGTGCCATTAATGGCAGGTGTCTCATTCCTGGT
GGGCGGCTCTGCCTTTCAGCAGGCTACCCCTCCCCCAAGTTAGAAGCCAGCCTGAGCTAC
ACAGTGAATTCTAGGCTAAGCAGGGCTATACAGTGAGACCCTGTCTCAAGCAAAAAGAAC
AAAAACCAAGAAACCCAAACAAATGAAATAAGAATTCATATTAATGCAAAGATTCTTCAC
CACGGCTCTAACTAACATTGGAGTCTGATAACACTCAGTGGTGGGTGAGTGGCTGCCTTG
AACACTGTAAGGCACAGCGAGGTCGCTGGCCTCTCCCCAATGCCATGCCAACAGCACCCA
CCTCTAAAGTCAACCCAACCCAAAACGTCTTGTCTCCTTGCATTCCCAAATATTCACTAT
CATCTTCATCTGAGAACCACTGATTTACAGAGGTGGGAAGAAAAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAGCACTTCAGAACAGGAAGGTCCTAAGGAGTCTGAGCAGCAGAGATTCT
CAAACCAACCACCCTGGGGAGCTCGTTAAAACCCCGATTCCTAGGCCCAGCCGCAGCCCC
ATCAATTTAGACAAGTACTGGGTTTTCCGTCGTCACTGCCTCCATCCTCATCCAATGGGT
AAGGAAAAGTGGGGTCCCCCCAACGTAACTGCTTTGCCCAAGGTCACAAGAGAGTTAGAA
CCAGGCCACCGAAGCCAACCAAGCTCTTCCCCAGCACCAGGGCGGGTGGAGTAAGGTGTG
TTTCTTCCGTCTTCAAGGCCATAAAGCTTAAAGGTGAATTCTGGGGCCAGCGAGCCTGAG
ATAAACGATCTGGACGTGGTTTTCATTAGCCCGATGGCCTTGCGCCTTGC
GCAAGGCAAGTAGGCTCTGGGGTCTCAGTTTCCTTCTCTGTCAAATGGAACAATAAGCGCTCATTCCTAACGATATCAGAAAGAGGAGAATGGACCAAAAGCCCCCGGCACCGAGCCCGGTCTACG
GTAAGCGCTCTATGGATCCCGGGGC..........CACTGAGGGGTTGTTCTTTTTCCAG
ATCCTTCCTGGGCGTCAGTAAATAGGGGAACTTTCATATGTGACGAATGTTGCAGTGTCCATCGGAGCCTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAAACACACAGCATGGCCTCCAACCCTGCTCCAG
GTAAACCATAGGAAGAGTTCTCATA..........GTCCTCTCCTACTCCTTGTTTTCAG
ATGGTTGAGACCTTGTACAACAATGGTGCTAACTCTATATGGGAACACTCTCTGCTGGACCCTGCCTCTATCATGAGTGGGAGGCGGAAAGCTAACCCACAGGACAAAGTTCA
GTGAGTGGAGTGGTTATAACTTCTA..........GTGTTCTTATTTGTTTCCAAACCAG
CCCCAATAAAGCAGAATTCATCAGAGCCAAGTATCAGATGTTAGCGTTCGTCCACCGATTGCCCTGCCGCGAGGACGACAGCGTGACGGCCAAAGATCTCAGTAAG
GTGGGCGCGCTCTGCCTTCTGTGGG..........TACTCTGTTTCTGTTTGTTTTTCAG
CAACTCCATTCAAGTGTGAGAACAGGGAATCTTGAGACCTGTCTGAGACTGTTGTCTTTAGGAGCCCAAGCCAACTTCTTTCATCCT
GTACGAAAATGTCAATTATTCAGAT..........TCTACTTCTTATTAATAATTCTTAG
GAAAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCTTACAGGCTGAATTGCTGGCCGTGTACGGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAGACTCCTGTTGACTATG
CAAGGTGAGAGGCTGAGGTTCTCACTGCACTGCGTGCTGAACGTTTCTTTTTTTCCTTGC
TAAGCGACTACTCTGGGTATGGCTTGTGTTTAGCCCCTTTAAAGACTTCCATTCTATTAT
TTTGTTGATGAAGATGTTTCAAATGTGTGTCAGCTGAGACAGACAAGATGAAAGGACTGC
CGAGTCCTAGCTGGTGTGGTTAACACCCGGTCATCATAGCACAGTGGTTTTCAGGTTATA
GCATACAGATCAGGGATCAGGAACTGGGAGGGGGTGGCTAGAGAGTGGGCTCAGTGGTTC
AGATTGCCATCTGCTCTGCAGAGAACTGGGGTTCAGGGTTCAGTTTCCAGAACCACGGTG
CCTCATCTGTACCTCCAATTTCAGGAGATTCAGCACTCTCTTCTGACCTCCAAGGGCACC
AGGCACACACACGGTACACTTATGAGCAGACAACATTGTATACGTAAAAGTCAATACATC
TTAATTTTTAAAATTAAATAATTAAAGAAGGCTAGGGAAATGGCACACTGAGTGGTGTGC
TTCCCTATAAGCATGAAGAACAGAACTGGGTTGGAAACGGCACAGGGCCGCAGCCCTGGC
CTGCCTGCTGTCTGTGGGCAAGGTTAAGACAGGCAGATCTTGGACAAGCCTGTTACTGTG
TTCTCCTAAGTATCTGGAGCTGCATGAGGGGACTTCATGGGGCCTAATCAATGTTAAAAC
CTGCAGATTTAACTGATGAAAGATGGATAGCTTTCCTTGTTTTCCCTGTTATTTTGTTAA
CTATGAAGGATCACATTCTGTCATAAAGAATGCAATGGGAAGTGACAAAAGTCTGTCCTA
GAGTCCTAGAACTTACTTCTCTGGAAGAGATGATTAATAAATTCTTGAAAAGTTTGAGGC
AAGGTTATATATGATTTGTTGTCAAAATGGACAGCCATGTTTTGTTTTGTTTTCCTTTGG
AAGACTGCGTGACTCTGTAACTCAGGCCGGCCTTGAATTC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Git2 (ENSMUSG00000041890)
Transcript ID	ENSMUST00000131016

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 201 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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