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Target CDS Information

Gene Symbol (Gene ID) Git2 (ENSMUSG00000041890)
Cross Reference
EMBL AC087330
GO GO:0005654, GO:0005925, GO:0032403, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Git2-010
OTTP OTTMUSP00000015487
OTTT OTTMUST00000034594
UCSC uc008zac.1
UniParc UPI0000D77AC3
Uniprot/SPTREMBL F6WV69
Vega_transcript Git2-010, OTTMUST00000034594
Vega_translation 194899, OTTMUSP00000015487
Definition protein_id:ENSMUSP00000118812
translation:
QMLAFVHRLPCREDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPL
HVASKAGQILQAELLAVYGADPGTQDSSGKTPVDYARQGGHHELAERLIEIQYELTDRLA
FYLCGRKPDHKSGQHFLIPQRADRRLLDLSELAKAAKKKLQSLSNHLFEELAMDVYDEVD
RRETDAVWLATQNHSTLVTETTVVPFLPVNPEYSSTRNQGRQKLARFNAHEFATLVIDIL
SDAKRRQQ

Chromosome 5
Length
Position(start - end)
18315
114748207 - 114766523
Orient to Chromosome minus
Link Location : (5:114748207-114766523)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Git2 (ENSMUSG00000041890)
Transcript ID ENSMUST00000131993
Reports
substitution
cSNPs3
Insertion13
Deletion14
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 114749267 (p.Pro211Pro), 114752309 (p.Leu152Leu), 114764403 (p.Tyr78Tyr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000131993)
QMLAFVHRLPCREDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPL
HVASKAGQILQAELLAVYGADPGTQDSSGKTPVDYARQGGHHELAERLIEIQYELTDRLA
FYLCGRKPDHKSGQHFLIPQRADRRLLDLSELAKAAKKKLQSLSNHLFEELAMDVYDEVD
RRETDAVWLATQNHSTLVTETTVVPFLPVNPEYSSTRNQGRQKLARFNAHEFATLVIDIL
SDAKRRQQ
MSMv4 transcript
QMLAFVHRLPCREDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPL
HVASKAGQILQAELLAVYGADPGTQDSSGKTPVDYARQGGHHELAERLIEIQYELTDRLA
FYLCGRKPDHKSGQHFLIPQRADRRLLDLSELAKAAKKKLQSLSNHLFEELAMDVYDEVD
RRETDAVWLATQNHSTLVTETTVVPFLPVNPEYSSTRNQGRQKLARFNAHEFATLVIDIL
SDAKRRQQ
homology100.00 (248 / 248)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Git2 (ENSMUSG00000041890)
Transcript ID ENSMUST00000131993
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GGTGAATTTAATGAAAAGCATTGAGTGAGTGGTGTACACAATGGTAAACG
GCGTGTGTTCAGGCAGGTGTGTGCCAAGGAGCCGGGATTGGGCTATCCTACACACAAAGC
TGGCTCCCATGTGGAGCTCCAAGGTCTCACTGCCAGTCAGGAACAGTGACGGCCCGGTCC
CCAGTCTCACTGTGCAGTCAGACGCAGTGGCGGGAGGTCCCCAGATATGGAGTGTTTTTA
GTGCAGCACTGTTTTTTCATTTTTGTTACTGGTTGTTTTTGACTATTTGTGGGATAAAAT
GTCCTCTCCTACTCCTTGTTTTCAGATGGTTGAGACCTTGTACAACAATGGTGCTAACTC
TATATGGGAACACTCTCTGCTGGACCCTGCCTCTATCATGAGTGGGAGGCGGAAAGCTAA
CCCACAGGACAAAGTTCAGTGAGTGGAGTGGTTATAACTTCTATTTCTTCTCAGCAAGTG
GCCCTGTGGAAAGGAGTGTGGCTATTTTGATCAGCCTCCAAAGGGGCTGTGGGCTATGCC
TGGGCATTTGCTGTGAGGAAGGCAGGGGGAGGGAGGCAGGGGGACCATAACTTTGGATGC
TCACCCAATTGAAGTTAGTGATTTCTCCAGTTGGAGTCCAGGGCTTGGAGCTTGACTCTG
GGTGATGAGGTAGATGAAACCGAGCGCTCTGTCTGCTGGCCGCAGCGTTCTGGCAGTGCC
GGGCCTGTGGCACAGGGTTAGATGCTGCTTCCTCAGGGTGCCCAGTTGAGAAAGGTAAAG
GGAAGAGAGGCGCTGGGAAGTTCAGGCGTTCTCTTATCAGCTCAGGCCTTTGACTCTGCT
GCAGTGGAGTCCAGCTTTGCCCTTCTTACTGTCCAGTGGGGGGGGGGGGGTGTCACTTCC
TCTTCTTACAGCACAAAGAATGAGAAATGTGTCTGAGCTGTTAAGTGAACTGTGTTCTTA
TTTGTTTCCAAACCAGCCCCAATAAAGCAGAATTCATCAGAGCCAAGTAT
1 EXON 1 114766452 114766523 - 0 72
CAGATGTTAGCGTTCGTCCACCGATTGCCCTGCCGCGAGGACGACAGCGTGACGGCCAAA
GATCTCAGTAAG
INTRON 1 - 2 114764674 114766451 1778
GTGGGCGCGCTCTGCCTTCTGTGGG..........TACTCTGTTTCTGTTTGTTTTTCAG
2 EXON 2 114764587 114764673 0 0 87
CAACTCCATTCAAGTGTGAGAACAGGGAATCTTGAGACCTGTCTGAGACTGTTGTCTTTA
GGAGCCCAAGCCAACTTCTTTCATCCT
INTRON 2 - 3 114764478 114764586 109
GTACGAAAATGTCAATTATTCAGAT..........TCTACTTCTTATTAATAATTCTTAG
3 EXON 3 114764347 114764477 0 2 131
GAAAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCTTACAGGCTGAA
TTGCTGGCCGTGTACGGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAGACTCCTGTT
GACTATGCAAG
INTRON 3 - 4 114761668 114764346 2679
GTGAGAGGCTGAGGTTCTCACTGCA..........CAATGGTGCTTTGTTCTCTTGGTAG
4 EXON 4 114761573 114761667 2 1 95
GCAAGGAGGGCACCATGAGTTGGCAGAACGCCTCATAGAAATACAGTACGAGCTGACGGA
TAGACTGGCCTTCTACCTCTGCGGCCGGAAACCAG
INTRON 4 - 5 114753325 114761572 8248
GTGAGTGAGAGGAGAGCAGCCTTGC..........TGAGCATATCTGGTTTCTGTTTCAG
5 EXON 5 114753279 114753324 1 2 46
ATCATAAAAGCGGACAGCACTTTCTAATTCCTCAGAGGGCAGACAG
INTRON 5 - 6 114753154 114753278 125
GTAAGGACCAGTTTGGTTTATGTGC..........TATGGCTACTCACTTTGGAAATAAG
6 EXON 6 114753148 114753153 2 2 6
ACGGCT
INTRON 6 - 7 114752328 114753147 820
GTAAGTAAATTACCGTGTGAAACTT..........ATGGTTTTGTGCTTTTTCTTAGCAG
7 EXON 7 114752279 114752327 2 0 49
CCTGGATTTGTCTGAGTTAGCAAAAGCTGCGAAGAAGAAACTTCAATCT
INTRON 7 - 8 114749635 114752278 2644
GTGAGTATCTCTTCCCTAGGAACCC..........GTGTCCCTGATGTGTTTATTTTCAG
8 EXON 8 114749562 114749634 0 1 73
CTGAGTAATCATTTGTTTGAAGAACTTGCCATGGATGTGTACGACGAAGTTGACAGGCGA
GAGACTGACGCAG
INTRON 8 - 9 114749341 114749561 221
GTGACGTAGCATGCGGCCTACCTAC..........CTCTCGGCTCCTTTCTTCCGGCTAG
9 EXON 9 114749243 114749340 1 0 98
TCTGGCTTGCCACGCAGAACCACAGTACCTTGGTAACCGAGACGACCGTCGTCCCTTTCC
TTCCGGTCAACCCCGAGTACTCCTCCACACGAAACCAG
INTRON 9 - 10 114748296 114749242 947
GCAAGTGGCTCTGTATGAAGAGTTA..........TTTCCCATTCTCTTCTCTCCCTTAG
10 EXON 10 114748207 114748295 0 - 89
GGCAGACAGAAATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCTGGTCATCGACATC
CTCAGTGATGCCAAGAGGAGACAACAGGG
3' upstream sequence
CAGTCCTCTGTCCAGGTCAAAAGGCAAGTGTCCAGCCCAGCCCCAGCCGAGAGCGCCTGG
GCCTTCTGGGATGCACTGTGGAGTCCCGAGCTGGAGGTGATGGGGCAGTCATAAGAACAG
CCATCCTGAGAGTCTCCTCACTAATAGACCACGACAGAGAGGTACCTGTTGGAACCCTGA
AGAATAAGGCGTACCTCAAAGTTACTACGTATAATTCACATTTATTTTATATGTATTTTT
TCATAATCACTTATTTTCCCCAAAAATTGGCATGTTGAAATTAACCCAAAAGCCTAACTC
TTAAATTTATTAAGGACATAAAGTGAGGCGATGGAGACTCTTGATGGCAGCTGTCACTTA
ACTCAGAACCCCTGCCTCTGAATAAGTACTGTTTACTGCTATAATTTTAAATGTCTGTAG
CGAGAAGCCTTGGGATGTCCGCTGAGCATCTATTTCAGAATGGCTCTTACAGGCCCTATC
TCCAGACGTAGGGCCCGCTTCCTCCTAGCCAGCCCTTAAGTTTGTTCTTGTTTTTTTTAT
AGATACAGGAACTATGCCTTTTTATTTTGAGGTACTTGAACAAGATGTTTGTACCATAAA
AATTAAGGTTCCTGTCAATATCACACTCCCCTAAGGCAGGAATTATTAAGTAACAGTAAT
TTATGTTTCTTCTTGATTGTTGAGGAATTTGGTCCTATCAATCCAGCCAGCAGTAAAGAT
GCTCTGAGAAGTGGCATTAAATTGGTGAGGTTGCAGTCTGGAGAGGTTTTGTATAAACTT
GAAACCTCAAAATATGCCCACTCTAAAAGAGAAATAATGAGAGATTCCATATTGTGTATA
ATATCAAAAACATTAGAAACAACTAAATAATAAATTCTAGAGAAACAGTCACATGATTAA
TGTACAGACATTTCCTGGAAATACTTCATGGTGTGGAGTAAAACAATACAGTCTTTAAAG
GTTTGCTATAGTCTCTGTTTTGTAAGGTGTGTGTATTAAT..........

Sequence Detail Report

Gene Symbol (Gene ID) Git2 (ENSMUSG00000041890)
Transcript ID ENSMUST00000131993
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 248 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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