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Target CDS Information

Gene Symbol (Gene ID) Mgat4a (ENSMUSG00000026110)
Cross Reference
EMBL AC084390, AC140321
GO GO:0006487, GO:0008375, GO:0016020, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Mgat4a-004
OTTP OTTMUSP00000046214
OTTT OTTMUST00000085537
UniParc UPI000198D191
Uniprot/SPTREMBL D3YZH7
Vega_transcript Mgat4a-004, OTTMUST00000085537
Vega_translation 179035, OTTMUSP00000046214
Definition protein_id:ENSMUSP00000118692
translation:
MGIPTVKREVKSYLVETLHSLIDNLYPEEKLDCVIVVFIGETDLDYVHSVVANLEKEFSR
EISSGLLEIISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQ

Chromosome 1
Length
Position(start - end)
27465
37462916 - 37490382
Orient to Chromosome minus
Link Location : (1:37462916-37490382)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mgat4a (ENSMUSG00000026110)
Transcript ID ENSMUST00000148047
Reports
substitution
cSNPs2
Insertion35
Deletion38
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num1
synonymous substitutions 37490284 (p.Cys33Cys),
non-synonymous substitutions 37466565 (p.His48Asn),
B6 transcript
(ENSMUST00000148047)
MGIPTVKREVKSYLVETLHSLIDNLYPEEKLDCVIVVFIGETDLDYVHSVVANLEKEFSR
EISSGLLEIISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQ
MSMv4 transcript
MGIPTVKREVKSYLVETLHSLIDNLYPEEKLDCVIVVFIGETDLDYVNSVVANLEKEFSR
EISSGLLEIISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQ
homology99.11 (112 / 112)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mgat4a (ENSMUSG00000026110)
Transcript ID ENSMUST00000148047
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACATTTCTGGCAGCCCTTGTGATCTTCATTAGATTATGTTTTGATGGCAG
GCGATTTCCAAACACACCATTTCTGGAACAAGACAGAAAGCAATTAGGTATTTGTGGAAC
GAGTGAAAGCTAAAATCATGGAGAGGAAACGACTGAGTCACAGGACAGACTGTGTTAGGG
CCTTTGATCCTGCTGACTATCTAGGACAGGCATCACACCGTGACTGACAGCATCCTTCAA
AGGGCTGCTGCTTGCTGGAGTGGAATAGGGTATTGTAACTTACTGATTCTTCTCACGTGG
AATTCAAGTTTAATTTTATCTATGATGTGATGTATTTTTGTGGGTTTGATATGGATGTTT
TTGTCTGCATTATGTCTGTGTACCACATCTGAGAGGCGCCCAGGGAAGCTAGAGGAGGGT
GTTAGAGCTCCTGGCACATGTGAGCCAGGACCTCTGAAAGAGCAGCTGGTAATGTCACCA
CTGAGCCTGTCTCTCCGTCCCTCATGTCATATCTTTCATGGCATTGTGGCCACGAGTCCA
TAATGCTGACTGCCTTGTTTAGAAGGTGAAATCTCAGTTGAATGAAAATTGACAGCACTA
TTGTCTAATTAACAGAAATTTTTACTCTGTACCCTGTTCAGTGGCTCATCCACTCCTCTG
GATGAAACGGAAACCACTTTTAGATTGACACGTGCTGAGCGTTCCCAACTTCTAAATCTT
TTCAATGACTATTTTAGGGAAATCTATCTTCTATATAAAAGTTTGATGAAATGCTAGTGC
ATAAAGAAAATGAAAGTTAGGAAGGACAGGCACATGCCTGGCATGGAAGAACATGGCTTC
ATGGAAGATTTGAGACCACGTGGGCTGTATATATCAACAACCTGTCTTTAGGAAAGAAAA
GAGAAGAAGACAGGAAAGTGAAATTGAGCTGTGGCCAGTGTGCTTGCTGCAACTTCCTTT
CTAGACTGCTGCGTAGTTTGTGCCTGCCTGGCTGTTTCTCCTGTGTTCTC
1 EXON 1 37496056 37496095 - - 40
AGTTAATTTTCAAAAGAGAATCGGCAGCAACTTCTGGAAG
INTRON 1 - 2 37490394 37496055 5662
GTAAGGGGTTCCTGCCACTTAAATT..........CATAATTACTCTATTTTTTTTTCAG
2 EXON 2 37490260 37490393 - 0 134
TTTCAATAGTTATGGGAATTCCTACTGTGAAGAGAGAAGTTAAATCTTACCTCGTAGAAA
CCCTTCACTCCCTTATTGATAATCTGTATCCTGAAGAGAAGCTGGACTGCGTTATAGTCG
TCTTCATAGGAGAG
INTRON 2 - 3 37466584 37490259 23676
GTAATTCCTTGTTATTTCTTTCATC..........AACCATACTTTTCTCTCTCTCCCAG
3 EXON 3 37466537 37466583 0 2 47
ACAGATCTTGATTATGTTAACAGCGTTGTTGCCAACCTGGAGAAAGA
INTRON 3 - 4 37464535 37466536 2002
GTAAGTTTTCTGAAGTGAGGAAGTG..........ATACAGCTAACCTTTCTCTTGGTAG
4 EXON 4 37464421 37464534 2 2 114
ATTTTCTAGAGAAATTAGTTCTGGCCTGCTGGAAATAATCTCTCCTCCTGAAAGCTATTA
CCCCGACTTGACAAACCTGAAGGAGACGTTCGGAGACTCCAAGGAAAGAGTGAG
INTRON 4 - 5 37462968 37464420 1453
GTGAGCGACAGAGATGCACACTTAG..........CATTCTCCGGTGCTGTTCATTTCAG
5 EXON 5 37462916 37462967 2 - 52
ATGGAGAACCAAGCAAAACCTGGATTACTGTTTTCTGATGATGTATGCTCAG
3' upstream sequence
GAGAAGGGCATCTACTACATTCAGGTGAGAGTCAGAGGCTTCTCAGGGTGTTTTGGGTTT
TGTTTCTTTTGCTCAGCTTTTATATTTGGTGATTTTAATTTTTTTTTAAAGTAAAATACA
TTTATTAAAACAGAAAAAGAAATTTACTTATAAAACATTTGAAATGGGAAAGTCAGGCAT
ACATCGCTCAAAATAGATTTTGGATTTTGTATATCGTTTGATGTTTGGGTTCAGAGGTCT
ATGTTAAAAACGTTCACGTGGATACGGAAGACGGGACGGTAGATTAGAGAGCATCTCTCC
TGGTCTGGAAGTGTCTTGTATTTGTGTGTATAGGTCGTGTATGTGTGTGGGCTTACTTGT
ACATGTGTGAGCTTACTTGTAAGGGCCAGAGGTCAATGTTGGTGTCTTCCTCAGCTAATC
TCTATCTTATTTTTTGAGGTCGAGTCTCTTACAGAACCTGGAACTTACCAGTTCAGCTAG
CATGGAGCATGGCTGACTAGCAAGTCTGAGAGTTCCCCCTGCCAGCCATGACTGCCTTTT
TGACATGGCTGATGGAGCTTAAACACACGTAGCTGTGCTTACACAGTGGTCTGGCCTCAA
ACTTGGGGTTGTCCCGCTTCTGGGGTTATAAGCACATGGTGCTTGTTTTCTTCGATTTCT
ATCAGTAAGGTTTTATAGTTCGCCTGGGATAAGCATTTTAGCCTTTTAGCCTTTTTTTTT
TTTTTCTTTTTTCTTTTTAGCAGTCTCCTGAATGAGATTAAAATGATTTTTTGTTTTGGG
GTTTTGTTTTTTGTTCCTTGGGGGAGGGGCATTTTTTCTTTTTTTGTTTGTTTGTTTGTT
TGTTTTTTCGAGACAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCATTCTGTAG
ATCAGGCTGGCCTCGAACTTAGAAATTCGCCTGCCTCTGCCTCCTGAGTGCTGGAATTAA
AGGCATGCGCCACCACTGCCCAGTTTACATTTTGCTTTTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Mgat4a (ENSMUSG00000026110)
Transcript ID ENSMUST00000148047
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 112 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information