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Target CDS Information

Gene Symbol (Gene ID) Cyb561 (ENSMUSG00000019590)
Cross Reference
EMBL AL596246
GO GO:0000293, GO:0016021, GO:0022865, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0006091, ...show all
MGI_trans_name Cyb561-002
OTTP OTTMUSP00000065483
OTTT OTTMUST00000006423
UniParc UPI0003B92A1C
Uniprot/SPTREMBL V9GWU6
Vega_transcript Cyb561-002, OTTMUST00000006423
Vega_translation 212077, OTTMUSP00000065483
Definition protein_id:ENSMUSP00000138838
translation:
MEHSSASVPAALPYYVAFSQLLGLTVVAVTGAWLGLYRGGIAWESSLQFNVHPLCMVIGM
IFLQGDALLVYRVFRREAKRTTKILHGLLHVFAFIIALV

Chromosome 11
Length
Position(start - end)
1271
105936555 - 105937827
Orient to Chromosome minus
Link Location : (11:105936555-105937827)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cyb561 (ENSMUSG00000019590)
Transcript ID ENSMUST00000150563
Reports
substitution
cSNPs0
Insertion8
Deletion9
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000150563)
MEHSSASVPAALPYYVAFSQLLGLTVVAVTGAWLGLYRGGIAWESSLQFNVHPLCMVIGM
IFLQGDALLVYRVFRREAKRTTKILHGLLHVFAFIIALV
MSMv4 transcript
MEHSSASVPAALPYYVAFSQLLGLTVVAVTGAWLGLYRGGIAWESSLQFNVHPLCMVIGM
IFLQGDALLVYRVFRREAKRTTKILHGLLHVFAFIIALV
homology100.00 (99 / 99)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cyb561 (ENSMUSG00000019590)
Transcript ID ENSMUST00000150563
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACACTGGCGGTCAGGAAATGCACTGTGAAGCAGTCAGCTTGGAGACTTGA
AGGAATGAGGTAGGGGATGATCCAACAAAGGACTCTCCCAACAGGAGCCTCCCCGGGTCT
TGGAAGGCACTTTAAGACCAACACTTAAACAAGATTCCATCCTGCCAAAATCGGTCCCTC
CTTTTCCTCCCAGGAGCCCAAATATACCCAGCAAACAATGAGAAATGGCTCAGCGCCATG
TTTAGTTTATAAGCATGTATTTATTGCCTGCACCACCAAGGAAGCTGTTGCTTACCTTAA
AAAGCCCATTAGCTTCTGCCAGACGAAAAGTTACCATAAGGTAATTCCGGTTTTTGGTTC
TCTCTCAACCGTACACTAGACAGCATACCCACCCTCTAAGAAGGAGCCCCCGCCCCAATT
CTGGCTTCTACCAGTGGGCAGCTCCCAGCATGCTGAGGTGTTCCAGGGACTGCCTTCACA
GTCATGCTTTGCCTCACAAGGTAAAATACCCCATTTCTCTCCTCCTCTCCGTGAGTCTGG
CCAGGCATCCAACAGGAAAGAACCTTTTGTTCCCAGCTTGTAGGAAGTCTGAGCTAGGCT
CTTATCTATTCGTAGCATTTCCTGGATAGCGGGCCAGGATCTGCTAAGCTCCCAGCCTTG
GTCTTGGCAACAGTCTTAAGTACAGACCTTGGCATACACCAGGTCTAGGACTTAAATGAG
AAGTTGGAAGGACACAATTTACCCTTAGATTGGTGTCTCTGTCTCTCTCTCTCTCTCTCT
CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCCTGGAGTGGAAAAAA
TGGGAGGCAAACTGTATCAACAACAGTGTCTATGTGGTCAATGTGGCTGGTGTGCAGATG
CGGAAAGGCAGGGTTATTCCCAGCCTTCCAGTAAAGTGTAAAGTGCCATCTCCGCCCACG
AGGGCTGGAAGAGGTGACCCTGGGTTCCCGGAGCTGAGCTTGGGCCCAGG
1 EXON 1 105944111 105944487 - - 377
CCAGGCCTGACACCTAGCGGCCTCCTGGGTTTGGGCGTGGAGAGTAGAGAGCGAGAAGCT
AGAGACCGGGAACCCGGGCGCCGAACCCGCGCCGCTAACCTTCCCCGCACGCCGGTCCCG
AGCTAGTCCGGAGCCAGTCCCGAAGCTGCTGGAGTTCGGGTCCTGAGTGCGGGTCGGTGT
AGCCGAGGTGCCCAACCGAGTGCCGGCGCCTGGCGGGACTTCCGGCGCAGGTGACCGTCG
CCTCCTCCCGCGCGCTACCGCTTCCCCGCCGCCGCCCCGTCTCCATGGCGACGCCGTCGC
GCCGAGGCTCGTGGAACCTGCCGAGCGTCCGGGGCGCGGCGCGTGGACGCGCGCAGGCCT
GGCGGCGGCGGGACAAG
INTRON 1 - 2 105940379 105944110 3732
GTAGGCGACGGGGAGGTGGGGAGCC..........CCCAGACCTGCCCTTTGTATTCCAG
2 EXON 2 105940100 105940378 - - 279
GAGGTCTGAAGAAGGCTGCTCCTGCTCTTCTTCCTGATGGGGAGCTAATCAGATTCTGTC
GTGCTTCGGGCTCTAAAGAGATGAATCCAATAAGGGAGGAGTGACCTGGAGAGGAGGAGG
AGGCAGGACAGAAGACTACAGGGGCACAGCATTCTTTCTCTGTTGGATACCCGAGAGTCT
CGGAGAAGGGTGAAGTGACCTTCTTGCCTTTAAGGAGCAGGGCAGGAGACATTTCCCTCG
AGAGCATCGTGGGACTAATCTAGAGCAGAACCCAAGAGG
INTRON 2 - 3 105937841 105940099 2259
GTAAGGAAGTTTTGGGGGAGCCTTG..........CTCTCTCTCTCTCTCTCTCTTGCAG
3 EXON 3 105937629 105937840 - 1 212
CTGGGGTCTCAGAATGGAGCACAGTTCTGCGTCTGTCCCTGCTGCACTGCCGTACTATGT
GGCCTTCTCCCAGCTGCTGGGCCTCACTGTAGTGGCTGTGACTGGTGCGTGGCTGGGTCT
GTACCGAGGTGGCATTGCCTGGGAAAGCTCCCTGCAGTTTAATGTGCACCCGCTCTGCAT
GGTCATAGGCATGATCTTCCTTCAAGGAGATG
INTRON 3 - 4 105936654 105937628 975
GTGAGTCCCGTGGGGCCAGCTCCCT..........ACATCTTTCTCTCACTTTCCATAAG
4 EXON 4 105936555 105936653 1 - 99
CTCTGCTGGTGTACCGTGTCTTCAGAAGAGAAGCCAAACGCACGACCAAGATCTTGCATG
GGCTGCTGCACGTCTTCGCCTTCATCATCGCCCTGGTGG
3' upstream sequence
GTGAGTTCCTGAACACAGTGTTTCCTTCTCTACCTGCTGCTTCAGGCTCCAGCAGCTGCT
GCTGGACACACACTGTTCCTGCTCCAAGCTGCTTGGCTTTGCCCCTACTCTTCTTCTCAC
AGGCATCACAGGCAGGGACACTGGGTGCTGGCCATCATCTGGCTGGACCAAAGCCCAGAC
GTTCTGGCTAGTGTTTCCTCCCAGGCCTCCCCTCTCTTCCCTTCTCCATGACTAGCCCTG
TCCTCACATGGCCCTTGCCTCTGCTCCAGGGTTGGTGGCTGTGTTCGACTACCACAAGAA
GAAGGGCTATGCAGACCTGTACAGCTTGCACAGCTGGTGTGGGATCTTAGTCTTTGTTCT
GTACTTTGTGCAGGTGAGTCTAGTGCTGTGGCAGCAAGGGCTGGGAGAGGTAAAGGGAGG
GCAAATGGGGTCCAGGTGTGGCATGTAGGAGCCCATTCTCCAGGGGGCATGTCCAGAAAG
GAAAAGAGCAGATGGATTTAGTTGGGTGGTTTTCGGAGGTTGACCTGGGTAGAATCTAGA
TTCTAGAGGCCAGGGTACCCCAGACTCCTTTATTCCACCCACCGACTATGCCTCCTATTA
GGTCCCAGCCAGCTCATGGCTCAGCAGAGCCCTCTCTCCCTTTAGTGGCTCGTGGGTTTC
AGCTTCTTCCTGTTCCCTGGAGCTTCATTCTCTCTGCGGAGCCACTACCGCCCTCAGCAC
ATTTTCTTTGGTGCCACCATCTTCCTCTTCTCTGTGGGCACAGCCCTACTGGGCCTGAAG
GAGGCCCTGCTGTTTAAATTGGGGTAAGTGTCCTGGAGAGGCAGGGCGCCAGGGCCTTCT
GCCTTCCTGGAAGCCTCTCTCTGAGCTGGCTTCTCACTGGGAGGGTGGAAGGTTGGGCAT
CGGGAAACCCGAGGCATCTTTAAGGCCTGGACTATGATTGTCTTAACTGGAACCCTTGGT
GGCTTTTCCCTTCACCCTACCCTACAGGTCCAAGTACAGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Cyb561 (ENSMUSG00000019590)
Transcript ID ENSMUST00000150563
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 99 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information